XLOC_008323 (si:dkey-202g17.3)


Basic Information

Item Value
gene id XLOC_008323
gene name si:dkey-202g17.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 9072821 ~ 9089507 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016705
GCTCATGCCTGAGCTCACTGAATTTCAAGCCGGTCCTTATGCTAATAACCTCGACAATATTAGCAgtgtgtttattataataataaactgaaaaacaGCTGTCACAGTAAGAAGTTCACAACAGTGAGCCGGCATGACTCTAAAGGTTGAAGGTGATCCAGCTTATGGCAGTGTGTCTGGAGCTCGTTTCACAGATGTGGAGGGCTCAGAGTCAGTCCCACTCCTCACTCCAggtcctccacctcctcctccagCCCGCCGGCGAGCATGGAAGCCACTGAGCAGAGAGGAGCTGGAGAGGTGCGCTGGAGGGCCGCAGTGGAGGAAATTTCGACGCCGACTGGTACTCTGCTTCTGGATCTGCTGGATGCTGCTGCTGGGCGCCGCGGTGTTAATAGTGATCCGGAGCCCACGGGCCACATCGCCTGTGCTGCACTGGTGGCAGAGGGATCTGATCTACCGCCTGCAGCCCATGCTCTTTTTGGATGCAGACAGACAGCAGGACAGCCGGATCAACAGAGTGTGTGAGCGTCTGCCGTATCTTAAGTCTGTGGGTGCTGGAGCAGTGATTCTGGAGGGACTGTTTGGGAACAGCAGCTCCTCAACAAACCTGACAGAGATCGACCAAAATCTTGGCACACTTCCACAACTCACACAGCTCATAACGGAAAGCCGGAAAGCAGGTGTGAGAGTGATCCTGGATCTTTGTGAGCTGGATCTATTTGAGCAAGAGTCAAACAATGACACTGCGGTTTGGTCCGGTGCGTCTGAGAGCATTCAGTACTCATTAAGGTATTGGCTGGATCACGGGGTATCAGGATTTGGGATCTGTGATACAGATGCAGCTTTCTCAGCAAAGACCCTAATGGAGTGGAACAAGCTGATGCAGGAGTTCAGCTCACAAGATGATGAAAGAATATTGATGGTGAGGCAAACAGGCAACACTCTTCCCGTGCTCAATGTGTCCAGCTTTGCTGGTTCACTAGTGGAGCTAGTAACAAAGTCCCTGATCCCTCCATCGCACCATCCGCTGTCTACCGCTGAGGTGGCGGAGGCCATAGAGGTCAGTCTGCAGATGCCACAGAGAGACTGGCCAAGCTGGACCGTTGGTGGAGGAGTACCAAGGGAGCTGAATAGAGCCATTCTACTTCTGATCATGACTTTACCTGGAACACCCATCATCAAATATGGAGATGAGCTCAGTTCAGCTCAGGGTTGGAACCGGCTCAATCAACCTCTAGCTCTTTTCCAATCCCTGAGTCAGTCTCGTGCCCGTGAGGAGGCTCTTCACTTTGGCAGATTCACCTTTCTATCCTTCAATACCAGCCTGCCATCCTCGTCTGGTCTCAATACTACAGACACACCTCTGTTAGCTTATCTGCGTTCCTGGGGCTGCGTTCACTTTCTTGTGCTGTTCAATTTGGGATCTGCACCTCACACCATGGACCCAGACTGGGCACCCAGTCTACCTGAAGGCGGAGTGTTTGTAACTAGCACAGGTCTTGACCGATTCGGCCCTGTGTCTCTAAATACAATCAAAATGCAACCACATGAAGCCATTGTCATCAAACTGTTCGAATCTGACAGCTCTTCCTGAGAAGAGATTACTGTGTAAAAGATCGTCTGGAGCCATATTTACAAAACATCTTAATGCTAAAAGTAGCTagaaaatcttaaaaataatggGCAGTCCTTAATTTAGGACTCATAACATTTTTTGCTTAAAGATTATTTCAGTTAAGACTATAGCTCCTAAAATCAGTGACGTGTTGGGGTAGCAAAGAGTCTCTAAGTCATAAGATCAAAATGCTAACTCTATTAAATTCCCTTTGCTGACAATCTGCTTTGGAGTTGTTTTTTTAACTTAGCCAACATTTGACCACAGTGAGCTTTTATTATGTCATCTCCTTAATCACAGAGTTATTCCcttactgtaataaatatattttcagattcattttgtttatttatttcaaactacACCACAAACTGAcaacaaaaatactttaaatatgtatatatacactaagggtgctttcacatctgtaattCGCTtaatttggtccagac

Function

symbol description
si:dkey-202g17.3 Predicted to enable catalytic activity. Predicted to act upstream of or within amino acid transport and carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0006865 amino acid transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-371 Predicted to enable catalytic activity. Predicted to act upstream of or within amino acid transport and carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000057504

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016705 True 2070 mRNA 0.47 9 9072821 9089507

Neighbor

gene id symbol gene type direction distance location
XLOC_008322 ppm1na coding upstream 3649 9053059 ~ 9069172 (+)
XLOC_008321 CR925772.1 coding upstream 33657 9039050 ~ 9039164 (+)
XLOC_008320 ap2s1 coding upstream 272844 8767650 ~ 8799977 (+)
XLOC_008319 NA coding upstream 307792 8762474 ~ 8765029 (+)
XLOC_008318 CR293508.3 coding upstream 340955 8731752 ~ 8731866 (+)
XLOC_008324 ptgir coding downstream 27823 9117330 ~ 9184449 (+)
XLOC_008325 CU467862.1 coding downstream 115757 9205264 ~ 9211131 (+)
XLOC_008326 slc37a4a coding downstream 205113 9294620 ~ 9315566 (+)
XLOC_008327 sgcg coding downstream 237745 9327252 ~ 9353696 (+)
XLOC_008328 FP016239.2 coding downstream 297843 9387350 ~ 9387790 (+)
XLOC_008463 BX663520.1 misc downstream 12162684 21252191 ~ 21252282 (+)
XLOC_008317 CR293508.2 non-coding upstream 389884 8682822 ~ 8682937 (+)
XLOC_008312 CR589941.1 non-coding upstream 1266901 7805779 ~ 7805920 (+)
XLOC_008329 FP016239.1 non-coding downstream 324646 9414153 ~ 9418151 (+)
XLOC_008330 CR936974.1 non-coding downstream 362471 9451978 ~ 9457382 (+)
XLOC_008331 NA non-coding downstream 551180 9640687 ~ 9649456 (+)
XLOC_008332 NA non-coding downstream 590514 9680021 ~ 9684915 (+)

Expression


Co-expression Network