XLOC_008325 (CU467862.1)


Basic Information

Item Value
gene id XLOC_008325
gene name CU467862.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 9205264 ~ 9211131 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016708
GAGTGACAAACGAACGAGTAcagtgaacagtgatttaatgactTTAGCGACTTGTTTTGCGTCTCAAATGGAAAATAATAAGTCAACTTTGTTTTTTCATCGAGTTAAAAAGATCACGACTGACTTTGTCAACAATAATCATCAGAGTGACACGATGGCTTCTCCTACACCTTGTACCACGACGAGAAGCCCAACAGAAAACCCAGAGAAAAGGAGGAAAGGGAAAAAAGTCTCTGCTTTCTTTAAGAGAGTATGGAAGGCTGCAAAGCGCCCTTTCCTTAGCTGTGACCAGAGCAGAGTGGTTCCCTTTGAACCACAGTCAGATAATGACTATTTCGAGCACCTGCCTGTTCCAGGTCCCTCCAGGACCGTCGCAGCACATGCAGACCCTGAGCCGGTGTTGCTGCCAGGCCAGGTCTGTGAAGAACCTCAGCCGTTGAGTGTTCCTGGCCCCACCAGGATCAAGCAAACAGCAGATGTGCCGAATGCAGATCGGGCCCGTCCTGAGTCCTCAACGGCCCTCACAGGTTATGTTGACACTGAGCAGATGCGTCCGCCAGTCCAGGTCTGTGAAGATCCTCAGCCCttgagtgttccgggcccctCCAATATTAAGAAAATGACGGATGCAGATTCGGTCAGTCCTGAGTCGCCTCCGTCTGTTCAAGACCCCTCTAAAATTGATGGGACTGATGaaaaccccaagaaaggaaggaaagggaAAAGAGTCTCTGCTTTCTTTAAGAGAGCATGGAAGGCTGCAAAGCTCCCTTTCCTGCATTTTACGCCACAGCCTGAGCCAGAGTCAGAGCCAGACCTTGAGTCAGTATGTCTGCCAGGCCAGGGTCCTGAGGAGGCTTCTGGGCTCACTCGTGgaCTCGATCTGACTCAGTTTGAAGTCGGAGACCTGATTGGAGAAGGAGCTTTTGGCCAGGTGTATGTGGCATCTCACAAACGCAGTAAAAGAGTAAAGGTTGCCCTGAAGTGCATGGTGAAGAGTCAACAGGACCGTTATCTGGAAGTTGATGGTCATTCCACACCTGTGCTTGCAGAAGTGGCAATGATGCTTAGGTTGATGAAAGCTCCGCGATGTCCAAACATCATCAGATTACACAACTGGCTTGAGATTGAGGACAACTGTGTTCTCATTCTGGAGTACGCAGAGTCATGCCAGACCTTGCTTCAGTACATCAAAGACACAGCGGACATTGAGGAAAACCAAGCACGCCAGTTAATGCGTCAGTTGATCCGAGCTATAATGTTCTGCACTGAGCGTGGAGTTTTCCATGGGGATATACACACAGCGAACATCCTGGTGACTCTACCCTGACTAGAGCTCAAATTGATCGACTTTGGATGTGCTCAGCCAATTACCCAAAAGCCTTTCAATAAAAGTGACTATCGAGGAGCTGGACATGGCATGCCACCTGAGGCTTTGAGGTGTCGTGTATTCCATGCTAACCCGGCATACGTCTGGACAATAGGCATTATGCTATATGAAATAATGCATGGACGACTGGCCTTCAATAACAGACAGTCAATAATGTTTGGCGCAATTCAGATACACCCCAGGTTATCCACAGCATGCGTGGACCTGATTTCCCAATGTTTGATCCGTAATCCAGCTAAACGGCTACAGTTACACCAGGTAGAAGAGCACTGCTGGTTCAATCCAACGACCCCAAATCCTGTGAAGCAGTTATACAAGAGGAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097786

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016708 True 1713 lncRNA 0.49 9 9205264 9211131

Neighbor

gene id symbol gene type direction distance location
XLOC_008324 ptgir coding upstream 20815 9117330 ~ 9184449 (+)
XLOC_008323 si:dkey-202g17.3 coding upstream 115757 9072821 ~ 9089507 (+)
XLOC_008322 ppm1na coding upstream 136092 9053059 ~ 9069172 (+)
XLOC_008321 CR925772.1 coding upstream 166100 9039050 ~ 9039164 (+)
XLOC_008320 ap2s1 coding upstream 405287 8767650 ~ 8799977 (+)
XLOC_008326 slc37a4a coding downstream 83489 9294620 ~ 9315566 (+)
XLOC_008327 sgcg coding downstream 116121 9327252 ~ 9353696 (+)
XLOC_008328 FP016239.2 coding downstream 176219 9387350 ~ 9387790 (+)
XLOC_008329 FP016239.1 coding downstream 203022 9414153 ~ 9418151 (+)
XLOC_008330 CR936974.1 coding downstream 240847 9451978 ~ 9457382 (+)
XLOC_008463 BX663520.1 misc downstream 12041060 21252191 ~ 21252282 (+)
XLOC_008319 NA non-coding upstream 440235 8762474 ~ 8765029 (+)
XLOC_008318 CR293508.3 non-coding upstream 473398 8731752 ~ 8731866 (+)
XLOC_008317 CR293508.2 non-coding upstream 522327 8682822 ~ 8682937 (+)
XLOC_008312 CR589941.1 non-coding upstream 1399344 7805779 ~ 7805920 (+)
XLOC_008331 NA non-coding downstream 429556 9640687 ~ 9649456 (+)
XLOC_008332 NA non-coding downstream 468890 9680021 ~ 9684915 (+)
XLOC_008334 BX000985.1 non-coding downstream 667717 9878848 ~ 9883813 (+)

Expression


Co-expression Network