XLOC_008326 (slc37a4a)


Basic Information

Item Value
gene id XLOC_008326
gene name slc37a4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 9294620 ~ 9315566 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016709
CGAAATCCACTCACATTTGACTTAAGGACAGCCATTAACTATAACATGAACATTTCCAGAGGAATGTGTGTCGGGTCGACATGGTTTAGTCGTGGATAAAGGATCTGCACGCAAGAGTTCAGAGCCCTCAGATGTTCCTGCTAACCCGCTAACAAAGAACACCTTCATTGTTGCTTATTTTAGCCATGGCGAAGACTGGATATGGCTACTACCGGGCGACTATATTCCTGGCCATGTTTGTGGGCTACACGCTGTATTACTTCAACAGGAAGACGTTCTCCTTCGTGATGCCGTCTGTAATGCAGGAGATCACACTG
>TCONS_00016710
ATGAACATTTCCAGAGGAATGTGTGTCGGGTCGACATGGTTTAGTCGTGGATAAAGGGTTAATGAAAGTGCATGTCCGTTTGCTGGAACTGACATCCGAAGGGCAGCCTCTTGTTCACGGAAGTACAGTAGATCTGCACGCAAGAGTTCAGAGCCCTCAGATGTTCCTGCTAACCCGCTAACAAAGAACACCTTCATTGTTGCTTATTTTAGCCATGGCGAAGACTGGATATGGCTACTACCGGGCGACTATATTCCTGGCCATGTTTGTGGGCTACACGCTGTATTACTTCAACAGGAAGACGTTCTCCTTCGTGATGCCGTCTGTAATGCAGGAGATCACACTGGATAAGGATGATCTGGGTCTCATCACCAGCAGTCAATCTCTGGCCTACGCCATCAGCAAGTTCATAAGCGGTGTGCTGTCTGATCAGATGAGCGCACGATGGCTCTTCTCTATTGGGCTGTTTACAGTCGGCGGCATTAATGTCATTTTCTCTCAGTCGTCTTCGGTGGCTGTCTTCTCAGGCCTGTGGTTTCTTAATGGACTAGGTCAAGGTCTAGGATGGCCACCTTGTGCAAAAGTGCTACGTAAGTGGTTCGAACCATCTCAATTTGGCACCTGGTGGGCAGTGCTGTCCTGCAGTATGAATCTGGCTGGAGGTCTCGGACCCATAATTGCAACTCTGATGGCTCAAAGCTACAGCTGGAGGTCCACGCTGTCCATCTCTGGCTTGACCTGCGTGGTCACGTCAATCTTCTGTCTGATCATTATCCGAAATGA
>TCONS_00016711
GTTTTACAGATCTGCACGCAAGAGTTCAGAGCCCTCAGATGTTCCTGCTAACCCGCTAACAAAGAACACCTTCATTGTTGCTTATTTTAGCCATGGCGAAGACTGGATATGGCTACTACCGGGCGACTATATTCCTGGCCATGTTTGTGGGCTACACGCTGTATTACTTCAACAGGAAGACGTTCTCCTTCGTGATGCCGTCTGTAATGCAGGAGATCACACTGGATAAGGATGATCTGGGTCTCATCACCAGCAGTCAATCTCTGGCCTACGCCATCAGCAAGTTCATAAGCGGTGTGCTGTCTGATCAGATGAGCGCACGATGGCTCTTCTCTATTGGGCTGTTTACAGTCGGCGGCATTAATGTCATTTTCTCTCAGTCGTCTTCGGTGGCTGTCTTCTCAGGCCTGTGGTTTCTTAATGGACTAGGTCAAGGTCTAGGATGGCCACCTTGTGCAAAAGTGCTACGTAAGTGGTTCGAACCATCTCAATTTGGCACCTGGTGGGCAGTGCTGTCCTGCAGTATGAATCTGGCTGGAGGTCTCGGACCCATAATTGCAACTCTGATGGCTCAAAGCTACAGCTGGAGGTCCACGCTGTCCATCTCTGGCTTGACCTGCGTGGTCACGTCAATCTTCTGTCTGATCATTATCCGAAATGAGCCCAGTGAAGTTGGCCTGCCAAATATTGAAGCTGGAGCCAAGAAAGTCAAAGGAGGCTCCAGCAAAAATGAAAGCACCTTCAAAGAGTTCATCTTTTCTCCATATCTATGGCTGATGTCGCTGGGGTACCTGGTGGTGTTTGGGGTGAAGACTGCCTACACAGACTGGGGGCAACTTTTTCTCATCCAGGATAAGGGGCAGTCGGCTCTAATGGGCAGTTCCTTCATGAGTGCCCTTGAAATCGGAGGACTGCTGGGTAGTTTAGCTGCAGGATTCCTGTCAGACAGAGCCGTGGCAAAGCATGGATTGCGATTGTATGGTAACCCTCGGCATGGGCTCTTGCTCTCCATGATGGCTGGGATGTTTGTGTCCATGTACCTCTTCCGCACAACTGTCACGGCACACAGCTCAAACGTCTGGATTCTCTTGTTGGGTGCTGCTTTTGGCTTTTCCTCCTATGGACCGATTGCCTTGTTTGGAGTTCTTGCGAATGAAAGCGCTCCGTCAAACTACTGCGGGACTTCTCACGCCATTGTCGCACTAATGGCAAATGTTGGTGGTTTTCTGTCAGGCTTGCCATTCGGAACCGTTGCTAAACACCACGGCTGGAACACAGCATTCTGGGTAGCAGAAATAGCCTGCATGGTCACAACAGTTGGATACTTCCTGCTCCGAAATATACGCACCAAGATGGGAAGCATTCCCAAGAAGGCAGACTAGACATTAGagtgttatttaaatatatttgaactAGTTTCTAAGAATAAAGGGCATGTTTTGAAAGTGTGGAAAAGCGCTTTTTTGTTTATAGAATGAATGTCTATTATCAAgatttcacactttatttttacaAACGTACAAATTGAGATATCATGTTGTGTCACTTTCAGAAGCACATCATGTTATTTATTCTGCTCGTTTTAAAAAACAGATTACAGACTCAACACAAATagatcgtttttacaaatttaagtggattgaacataaaacatttaagttctcCCAGAAGAAACTTAAGAGTTTTGTTGTTTGAactcactttaaataagtagtttaaacgagCAGCATTTTTGACTGTATATAAGTAGTTCATTAAGGCAGGTTAAAGCCATTTAAGAATAGCGTGCATTTCTTTATGCCTTTCAAAGCTTTAACTGGTCCTACCtctattgtattaaaaatatgaCATATGTGACATAAGAATGTTATCACATGAATGTTTAATAACacaatgtaataaattaaaaaaggaaagatTTTCCTGA
>TCONS_00016712
tgtctaagtaaagtcagaccttactgccctaattaattaagtcaaggcatgatcatattttattttggtgaaataagcgtaatctagaggcctttgcctttcatataagccacttctgatactaaatgatctactagaagtcaagttattatttgttgttcctaaaacttggataggcgaaaagacttttgttaggtagtgtactCACATGATCCCTTTTCAGTCGTTTTACATTCGTAAtaaattgattcatttgtttaaaCAGTGGTTCGAACCATCTCAATTTGGCACCTGGTGGGCAGTGCTGTCCTGCAGTATGAATCTGGCTGGAGGTCTCGGACCCATAATTGCAACTCTGATGGCTCAAAGCTACAGCTGGAGGTCCACGCTGTCCATCTCTGGCTTGACCTGCGTGGTCACGTCAATCTTCTGTCTGATCATTATCCGAAATGAGCCCAGTGAAGTTGGCCTGCCAAATATTGAAGCTGGAGCCAAGAAAGTCAAAGGAGGCTCCAGCAAAAATGAAAGCACCTTCAAAGAGTTCATCTTTTCTCCATATCTATGGCTGATGTCGCTGGGGTACCTGGTGGTGTTTGGGGTGAAGACTGCCTACACAGACTGGGGGCAACTTTTTCTCATCCAGGATAAGGGGCAGTCGGCTCTAATGGGCAGTTCCTTCATGAGTGCCCTTGAAATCGGAGGACTGCTGGGTAGTTTAGCTGCAGGATTCCTGTCAGACAGAGCCGTGGCAAAGCATGGATTGCGATTGTATG

Function

symbol description
slc37a4a Predicted to enable transmembrane transporter activity. Acts upstream of or within response to steroid hormone. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in intestinal bulb; liver; ovary; and yolk syncytial layer. Orthologous to human SLC37A4 (solute carrier family 37 member 4).

GO:

id name namespace
GO:0048545 response to steroid hormone biological_process
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2230 Predicted to enable transmembrane transporter activity. Acts upstream of or within response to steroid hormone. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in intestinal bulb; liver; ovary; and yolk syncytial layer. Orthologous to human SLC37A4 (solute carrier family 37 member 4).

Ensembl:

ensembl_id ENSDARG00000038106

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016709 False 317 mRNA 0.46 2 9294620 9297563
TCONS_00016710 False 783 mRNA 0.49 4 9294665 9304261
TCONS_00016711 False 1927 mRNA 0.44 8 9297340 9315566
TCONS_00016712 True 773 processed_transcript 0.45 4 9303809 9311478

Neighbor

gene id symbol gene type direction distance location
XLOC_008325 CU467862.1 coding upstream 83489 9205264 ~ 9211131 (+)
XLOC_008324 ptgir coding upstream 110171 9117330 ~ 9184449 (+)
XLOC_008323 si:dkey-202g17.3 coding upstream 205113 9072821 ~ 9089507 (+)
XLOC_008322 ppm1na coding upstream 225448 9053059 ~ 9069172 (+)
XLOC_008321 CR925772.1 coding upstream 255456 9039050 ~ 9039164 (+)
XLOC_008327 sgcg coding downstream 11686 9327252 ~ 9353696 (+)
XLOC_008328 FP016239.2 coding downstream 71784 9387350 ~ 9387790 (+)
XLOC_008329 FP016239.1 coding downstream 98587 9414153 ~ 9418151 (+)
XLOC_008330 CR936974.1 coding downstream 136412 9451978 ~ 9457382 (+)
XLOC_008331 NA coding downstream 325121 9640687 ~ 9649456 (+)
XLOC_008463 BX663520.1 misc downstream 11936625 21252191 ~ 21252282 (+)
XLOC_008319 NA non-coding upstream 529591 8762474 ~ 8765029 (+)
XLOC_008318 CR293508.3 non-coding upstream 562754 8731752 ~ 8731866 (+)
XLOC_008317 CR293508.2 non-coding upstream 611683 8682822 ~ 8682937 (+)
XLOC_008332 NA non-coding downstream 364455 9680021 ~ 9684915 (+)
XLOC_008334 BX000985.1 non-coding downstream 563282 9878848 ~ 9883813 (+)

Expression


Co-expression Network