XLOC_008329 (FP016239.1)


Basic Information

Item Value
gene id XLOC_008329
gene name FP016239.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 9414153 ~ 9418151 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016715
CTGGTGATACTTCcccagccggcacacgaccgaccttcaacgttgaaatatggttgaaataaggtcagatgtgttttgaacgttgaaataatgttgatagaacgtttaatgttgaacggttgaaaaacagcctgcatatgacaaggcttcaacgttgaaatgtggttgaaaatacgtcagtagttgctttaatgttgaaacaatgttgaatgataaatggttgaaaaaagttacagaaatccttgtacaaatcaacgttgacattttttttatcatggtctgtatgttgaattaacgtcatggcttcacccaatattcaacatgtttggttaccatggtatcggaggactcggcgcacgcggccacgcgcagcgcttcacttcacttaattacgaacacctgacctgcagtgcagcagaattcagagacatgtaacttactccagagacgcactaacttgcacagcattgaatggaaaaggctttgcccatgtccagttgaggggCATCAAGAACACGCAGAAAGCCTACCTggacagactgcagttctgctactccatgccaaggcttttgtatggatgtcttgactactactgtgttctctaaaggtttttggaagctccatttgaggacatcaaggacatactgatggcctaaaccagtgtcagcctagacagacagacatctattgcagtcctgctacacaagaccaaactctctgcttttgtatggatgtctgactagtacggtgttctctaaaggtgtaactggagcaaaacaacagcacccgttacagtgaaatttgtgttcataaaagatagtgatatatgtgtaacaggtccagaacatttgtcataaaggttaaatcacagtaagtactgtaaaaataacttgtttgcctttgccacaacaggtcatggtgtgtgcttactgctcgtagtaaacacacatgctgatctgatgcgggagagatatacgcaaacacatttgtatttactgttttgttttgcctcactaaagtgttgttggagcttggtatgttcacagttgaaatcactgaagtcacatagaacgttttgacaatgtgttttgtgccttatcttgacaatgaccatcttgggaccattgctttctgtagaggatgaggagcatttaatcaaaaatattttagtttgtgttctgaagattaacaggtctctgggatgacacaagtaattaataacagaacctatatgaacacttaatgtgacatgtaatagtgaaatagtggtcctacattcacaaatgtgagccattattataagacccatgtgaacatgcaatttttatgatactaataataataatggaataacaaattgcttttactgttgtgtttgtgagagagaatattctacacattttcttgatgatttactgaaatatttgtctacatgttccactgtcacaggtgctcagttttgctgcagtaatgctaaacacaatagatgtactttatgcaaaaaaaaaaaaaaaaaaactactaaatatttagcatgcagacctgcaaagtgaaggagtaatgtcaggattagattatagcatgagttttcactattgtgaaagtaaagccattcattcacaatgaattggaatagcaaacctcattattgattttgtaggaaactcacctggtgtttgagaaataaatatgtatttaagagctagactgatatagatgttttagtgttttacacttgattctttgtcctcagtgccatcttttacctcgtgtttctctcaacctataaaacctcaaacagatgtaatgtatttcacttgtgattcttagttgtgagtgatattttttattttatttttttactgcagtcactttaaaaatgggtattttgtaaactttgtaaacagaattgaagcgtagtttagttacttagtttaatttggttagtatctgtctttctgaagacagtaacagtttacaataaggttgtattagtaagtgttaatgtatttactaacatgaacaaagagcaatgaagcatctttcatataaagaaagtacagttcatgtcagctcagtgcattatgttaacaagcacacattttgattttaatagcatcgggacatatttcaattaattaaatgattaataaatgctgtacaagtatttgttctttgttcatgttagtaaacattaactttaattcatgaaacctaattaaaaagtgactatttaattgtatgccttttttctgtatttgagtgtacagcatgtatagtaacctgcatggttttaatgaactatgtatgctgtaaatgttgctgtatatttagaataattgaaataattaggtgtgtattaaataaattgatacacagactaa

Function

GO:

id name namespace
GO:0045765 regulation of angiogenesis biological_process
GO:0022900 electron transport chain biological_process
GO:1901342 regulation of vasculature development biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104870

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016715 True 2384 lncRNA 0.35 4 9414153 9418151

Neighbor

gene id symbol gene type direction distance location
XLOC_008328 FP016239.2 coding upstream 26363 9387350 ~ 9387790 (+)
XLOC_008327 sgcg coding upstream 60457 9327252 ~ 9353696 (+)
XLOC_008326 slc37a4a coding upstream 98587 9294620 ~ 9315566 (+)
XLOC_008325 CU467862.1 coding upstream 203022 9205264 ~ 9211131 (+)
XLOC_008324 ptgir coding upstream 229704 9117330 ~ 9184449 (+)
XLOC_008330 CR936974.1 coding downstream 33827 9451978 ~ 9457382 (+)
XLOC_008331 NA coding downstream 222536 9640687 ~ 9649456 (+)
XLOC_008332 NA coding downstream 261870 9680021 ~ 9684915 (+)
XLOC_008333 si:dkey-13m3.2 coding downstream 443822 9861973 ~ 9873144 (+)
XLOC_008334 BX000985.1 coding downstream 460697 9878848 ~ 9883813 (+)
XLOC_008463 BX663520.1 misc downstream 11834040 21252191 ~ 21252282 (+)
XLOC_008321 CR925772.1 non-coding upstream 374989 9039050 ~ 9039164 (+)
XLOC_008319 NA non-coding upstream 649124 8762474 ~ 8765029 (+)
XLOC_008318 CR293508.3 non-coding upstream 682287 8731752 ~ 8731866 (+)
XLOC_008317 CR293508.2 non-coding upstream 731216 8682822 ~ 8682937 (+)
XLOC_008335 BX000985.2 non-coding downstream 477707 9895858 ~ 9895986 (+)

Expression


Co-expression Network