XLOC_008330 (CR936974.1)


Basic Information

Item Value
gene id XLOC_008330
gene name CR936974.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 9451978 ~ 9457382 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016716
ccccgcccctttgttagacgctgtgacgggcgggaagtgttaccAGGAGGGAACACGCgtcggccagaaccaaggtaagctgttcccacCCCTGCCTgtcacttagctacctatctgcagcctgccacctacctagctacagcctgcatcttatatatattataggtagatacagactgatgtgactggagtggggtggggtgttttatttatacatatatacgccttttttttaggtgagggcaggcacttttgagtgagttcccccaagccatactgagggtctcaactgcttccgctctaaagccaaatgtggttcagatttgtgagaagaagcgcggtcaagtctctggcagcaaggagtaggcaaaagatgccatgttcagaagaactgttcataatcttcactcaatgttctattaatgttcaggacacttcatgttcagaagaaataaaactgttaataatgacatttgaggacttttttttgtgaaatcccttatgcggcccagcctcacccagactttgcctcctgcggcccc

Function

GO:

id name namespace
GO:0038187 pattern recognition receptor activity molecular_function
GO:0001875 lipopolysaccharide immune receptor activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104456

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016716 True 542 lncRNA 0.48 3 9451978 9457382

Neighbor

gene id symbol gene type direction distance location
XLOC_008329 FP016239.1 coding upstream 33827 9414153 ~ 9418151 (+)
XLOC_008328 FP016239.2 coding upstream 64188 9387350 ~ 9387790 (+)
XLOC_008327 sgcg coding upstream 98282 9327252 ~ 9353696 (+)
XLOC_008326 slc37a4a coding upstream 136412 9294620 ~ 9315566 (+)
XLOC_008325 CU467862.1 coding upstream 240847 9205264 ~ 9211131 (+)
XLOC_008331 NA coding downstream 183305 9640687 ~ 9649456 (+)
XLOC_008332 NA coding downstream 222639 9680021 ~ 9684915 (+)
XLOC_008333 si:dkey-13m3.2 coding downstream 404591 9861973 ~ 9873144 (+)
XLOC_008334 BX000985.1 coding downstream 421466 9878848 ~ 9883813 (+)
XLOC_008335 BX000985.2 coding downstream 438476 9895858 ~ 9895986 (+)
XLOC_008463 BX663520.1 misc downstream 11794809 21252191 ~ 21252282 (+)
XLOC_008321 CR925772.1 non-coding upstream 412814 9039050 ~ 9039164 (+)
XLOC_008319 NA non-coding upstream 686949 8762474 ~ 8765029 (+)
XLOC_008318 CR293508.3 non-coding upstream 720112 8731752 ~ 8731866 (+)
XLOC_008336 CU856523.1 non-coding downstream 1028152 10485534 ~ 10487195 (+)

Expression


Co-expression Network