XLOC_008337 (CT573316.1)


Basic Information

Item Value
gene id XLOC_008337
gene name CT573316.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 10750208 ~ 10756943 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016721
TCACCGCTCTAGCGCTGTGGAGGCTAAACTTCGAAACCGAAACCCCCTTTGCGAGATTCGCCGCATCTATACCTGATTTGCGTTCAAAAATGCCTGCTTAATTATTCCATAGTAGGACCAAACATGCCTTAAGAAAAGGAGTACGTTTGAAACTGTAGGAACCATAAAAAGTACGCCAGGTGAATGCCTTTCTACTCCAGGAAGCCGCAGCATACGCCTGAAGCAGGAAGAGGACGCGGTCAGTTTGAAATagctgaatcgATGTCATCCTGAAAGCAACAGTACAGTTAAGCTGGGCCAGTTCTGCAGATGATCAGAGGGACTTCGCCATCATCACATGCCTCATTGCTGCAGTCAGACTGAAACAGGACGGTGATGCATGGCAGTCCATGCCCGAGATACGGATGATGAAGAGACCACAGCAACATCTGGTCCAGATGAGGACACAAGGGCAGGTGGACTGATGCAGGGTCTTGTTCAATTCACTACAGGAGAACAGGAGTGGCCAAACTCAGTCCAGAACTGCTGCTGTCTTGCAGAGTTTACTTGAAGTTGactctaaactctgcaggacaccagccgtCCAGAactaagtttgggcacccctgcattaCAGCATTTCCAGGATGCTGCTGTGGACTTTTTTGCCCTCACCACACACACCAATCTGCAGCTATTTCAGATcatacaaaacattaaaaaaaaaaataaaataaaaaacagtcatTTTACTGCACAATGTGTCATTTGATTTCTGTAGTGCTAGTAATAAAATTATCCTACCTCTTATTTTGAATTCTTTTTTCCTCAAATGTGTTAGTTCCCTTGTATACAGGTTTAGCTCCATCACAACACTT
>TCONS_00016722
CTTCGAAACCGAAACCCCCTTTGCGAGATTCGCCGCATCTATACCTGATTTGCGTTCAAAAATGCCTGCTTAATTATTCCATAGTAGGACCAAACATGCCTTAAGAAAAGGAGTACGTTTGAAACTGTAGGAACCATAAAAAGTACGCCAGGTGAATGCCTTTCTACTCCAGGAAGCCGCAGCATACGCCTGAAGCAGGAAGAGGACGCGGTCAGTTTGAAATagctgaatcgATGTCATCCTGAAAGCAACAGTACAGTTAAGAAGCCCATGTTTAACTGTATCTCCACAAAGCTGGGCCAGTTCTGCAGATGATCAGAGGGACTTCGCCATCATCACATGCCTCATTGCTGCAGTCAGACTGAAACAGGACGGTGATGCATGGCAGTCCATGCCCGAGATACGGATGATGAAGAGACCACAGCAACATCTGGTCCAGATGAGGACACAAGGGCAGGTGGACTGATGCAGGGTCTTGTTCAATTCACTACAGGAGAACAGGAGTGGCCAAACTCAGTCCAGAACTGCTGCTGTCTTGCAGAGTTTACTTGAAGTTGactctaaactctgcaggacaccagccgtCCAGAactaagtttgggcacccctgcattaCAGCATTTCCAGGATGCTGCTGTGGACTTTTTTGCCCTCACCACACACACCAATCTGCAGCTATTTCAGATcatacaaaacattaaaaaaaaaaataaaataaaaaacagtcatTTTACTGCACAATGTGTCATTTGATTTCTGTAGTGCTAGTAATAAAATTATCCTACCTCTTATTTTGAATTCTTTTTTCCTCAAATGTGTTAGTTCCCTTGTATACAGGTTTAGCTCCATCACAACACTT
>TCONS_00016723
cagagctgaatcgATGTCATCCTGAAAGCAACAGTACAGTTAAGGCAGAAGCCCATGTTTAACTGTATCTCCACAAAGCTGGGCCAGTTCTGCAGATGATCAGAGGGACTTCGCCATCATCACATGCCTCATTGCTGCAGTCAGACTGAAACAGGACGGTGATGCATGGCAGTCCATGCCCGAGATACGGATGATGAAGAGACCACAGCAACATCTGGTCCAGATGAGGACACAAGGGCAGGTGGACTGATGCAGGGTCTTGTTCAATTCACTACAGGAGAACAGGAGTGGCCAAACTCAGTCCAGAACTGCTGCTGTCTTGCAGAGTTTACTTGAAGTTGactctaaactctgcaggacaccagccgtCCAGAactaagtttgggcacccctgcattaCAGCATTTCCAGGATGCTGCTGTGGACTTTTTTGCCCTCACCACACACACCAATCTGCAGCTATTTCAGATcatacaaaacattaaaaaaaaaaataaaataaaaaacagtcatTTTACTGCACAATGTGTCATTTGATTTCTGTAGTGCTAGTAATAAAATTATCCTACCTCTTATTTTGAATTCTTTTTTCCTCAAATGTGTTAGTTCCCTTGTATACAGGTTTAGCTCCATCACAACACTT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097312

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016721 False 857 lncRNA 0.45 3 10750208 10756943
TCONS_00016722 False 859 lncRNA 0.44 3 10750236 10756943
TCONS_00016723 True 643 lncRNA 0.44 2 10751101 10756943

Neighbor

gene id symbol gene type direction distance location
XLOC_008336 CU856523.1 coding upstream 263013 10485534 ~ 10487195 (+)
XLOC_008335 BX000985.2 coding upstream 854222 9895858 ~ 9895986 (+)
XLOC_008334 BX000985.1 coding upstream 866395 9878848 ~ 9883813 (+)
XLOC_008333 si:dkey-13m3.2 coding upstream 877064 9861973 ~ 9873144 (+)
XLOC_008332 NA coding upstream 1065293 9680021 ~ 9684915 (+)
XLOC_008339 BX323573.1 coding downstream 106907 10863850 ~ 10866560 (+)
XLOC_008340 CR538726.1 coding downstream 546382 11303325 ~ 11305074 (+)
XLOC_008341 si:ch73-321d9.2 coding downstream 624589 11381532 ~ 11394322 (+)
XLOC_008342 ndufc2 coding downstream 670677 11427620 ~ 11443214 (+)
XLOC_008343 BX324136.1 coding downstream 808448 11565391 ~ 11565509 (+)
XLOC_008463 BX663520.1 misc downstream 10495248 21252191 ~ 21252282 (+)
XLOC_008331 NA non-coding upstream 1100752 9640687 ~ 9649456 (+)
XLOC_008345 NA non-coding downstream 926146 11683089 ~ 11691460 (+)
XLOC_008350 CR848025.2 non-coding downstream 1225507 11982450 ~ 11986634 (+)

Expression


Co-expression Network