XLOC_008348 (prkd2)


Basic Information

Item Value
gene id XLOC_008348
gene name prkd2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 11825366 ~ 11875820 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016738
ACTGCAAGTTCAACTGCCACAAGCGATGCGCATACAAGGTCCCAAATGACTGCTTAGGAGAGACTCTTGGTAATGAGTGTGTCTAGATTCACATTGTTAACGCATTAGGAATACATTTAAACTGTGCCTTCTGTATCTGCAAACATGCAATTATTAATTTAGTCACTTCATTCAGCTTGTGTGTTAATGTTCTCACCTCTttcttatctctctctctctcagacatATTAAGTCCGAGCACAGATGCCGAGGTGCCGATGGATTACAGCAGTGAGTTTTCTGACAGTGATAAATCTTCCCTGATAGACGACTCAGATGAGGCCTGCAGCATCCCAGGATCTTTCTCACCAGACAGCAGCCAGGACAGGTCCAGCGGAGACCAGAGTTCTAATATCCCTCTGATGAGAGTAGTGCAGTCGGTCAGGCAGACCACACGACGCTCCAGCACCGCTATCAAGGAAGGCTGGATGGTGCACTACAGCAACAAAGACACACTGAGGAAGAGACACTACTGGCGCCTGGACTGCAAATGCATCATCCTGTTTCAAAACGACACCACCAACAAATACTACAAGGAAATCCCTCTCTCGGAAATCCTGGAAGTGCGGTCGGCAGGTGATTTCTCTCTCGTCCCTGCTGGCACCAGCCCTCATTGCTTTGAGATTATGACGGGAACCATGATCTACTTTGTTGGGGAGGACCCCAACACCTCGTCCCCGTCATCCAGCATATCCGGCCTGCCCGTCTCTCCCAGCAGCGTTGTGCCTAATAGCGGAGTTGGACGAGAAGTCGCCAAAGGATGGGAGACGGCTATACGCCAGGCCCTCATGCCAGTTATTTTCCAAGATAATCCTCCGGCTGAAGGCCACACACCTCACCGCCAGGCAtcagtcagcatttctgtgtcTAACAGCCAGATTCAAGAAAATGTGGACATTGGAATGTTCTACCAGATCTTTGCTGATGAGGTTCTGGGCTCTGGACAATTCGGTGTGGTTTATGGAGGAAAACACCGGAAAAGCGGCCGGGATGTTGCTGTGAAGGTGATTGACAAGCTTCGCTTCCCCACCAAGCAGGAAAGTCAACTGAGGAATGAAGTGGCCATACTGCAGAGCCTGCGACATTTGGGTATAGTGAATCTGGAGTGTATGTTTGAGACACCGGAGAAGGTGTTTGTGGTTATGGAGAAACTTCACGGTGACATGCTTGAGATGATTCTGTCCAGTGAGAAAGGAAGACTTCCTGAGAGGCTCACCAAGTTCCTTATAACACAGATTTTGGCTGCTCTGAGACATCTTCACTTCAAAAACATTGTGCACTGTGACCTCAAACCTGAGAATGTGCTGTTGGCATCAGCTGATCCTTTCCCACAGGTGAAACTTTGTGACTTTGGTTTTGCTCGCATCATTGGAGAAAAGTCTTTCCGTCGTTCTGTCGTTGGCACGCCGGCTTACTTGGCCCCCGAAGTACTCCTGAACCAGGGTTACAATCGCTCTCTGGACATGTGGTCAGTCGGAGTGATAATGTATGTCAGTCTGAGCGGGACGTTCCCCTTTAATGAGGATGAGGACATCAACGATCAGATCCACAATGCAGCTTTCATGTACCCGCCGAACCCCTGGAAACAGATCTCTCCTGACGCTACCGACCTCATCAATAACCTGCTCCAAGTGAAGATGAGAAAGCGCTATAGTGTGGATAAGAGTCTCAGTCATGCCTATCTGCAGGATTACCAGACCTGGCTGGACCTGCGAGAGCTGGAGTCAAAGCTAGGGGAACGTTATATAACTCACGAGAGTGATGACAGCCGCTGGCAGCAGTATGCCCGGGACCACACGCTGCCGTACCCCCCTCACCTGGTTCCCCCGCCACCTGCATCCGACGACGAGGATGGCAATGAGGATGCCGACATGCAGGGCCTGACAGAGCGGGTTAGCATCCTATGA
>TCONS_00016739
CAGGCAtcagtcagcatttctgtgtcTAACAGCCAGATTCAAGAAAATGTGGACATTGGAATGTTCTACCAGATCTTTGCTGATGAGGTTCTGGGCTCTGGACAATTCGGTGTGGTTTATGGAGGAAAACACCGGAAAAGCGGCCGGGATGTTGCTGTGAAGGTGATTGACAAGCTTCGCTTCCCCACCAAGCAGGAAAGTCAACTGAGGAATGAAGTGGCCATACTGCAGAGCCTGCGACATTTGGGTATAGTGAATCTGGAGTGTATGTTTGAGACACCGGAGAAGGTGTTTGTGGTTATGGAGAAACTTCACGGTGACATGCTTGAGATGATTCTGTCCAGTGAGAAAGGAAGACTTCCTGAGAGGCTCACCAAGTTCCTTATAACACAGATTTTGGCTGCTCTGAGACATCTTCACTTCAAAAACATTGTGCACTGTGACCTCAAACCTGAGAATGTGCTGTTGGCATCAGCTGATCCTTTCCCACAGGTGAAACTTTGTGACTTTGGTTTTGCTCGCATCATTGGAGAAAAGTCTTTCCGTCGTTCTGTCGTTGGCACGCCGGCTTACTTGGCCCCCGAAGTACTCCTGAACCAGGGTTACAATCGCTCTCTGGACATGTGGTCAGTCGGAGTGATAATGTATGTCAGTCTGAGCGGGACGTTCCCCTTTAATGAGGATGAGGACATCAACGATCAGATCCACAATGCAGCTTTCATGTACCCGCCGAACCCCTGGAAACAGATCTCTCCTGACGCTACCGACCTCATCAATAACCTGCTCCAAGTGAAGATGAGAAAGCGCTATAGTGTGGATAAGAGTCTCAGTCATGCCTATCTGCAGGATTACCAGACCTGGCTGGACCTGCGAGAGCTGGAGTCAAAGCTAGGGGAACGTTATATAACTCACGAGAGTGATGACAGCCGCTGGCAGCAGTATGCCCGGGACCACACGCTGCCGTACCCCCCTCACCTGGTTCCCCCGCCACCTGCATCCGACGACGAGGATGGCAATGAGGATGCCGACATGCAGGGCCTGACAGAGCGGGTTAGCATCCTATGAGGAAGAAAGAAATCAGAGGAATGAAGAGTTACCTGCCAGAACTTAAGCAATTTCTAAGTGTAGGAAGTGTATTCATGAGGCCctctgtgaaaacaaaacaaaacaaaacaagacatagTTTGGGTTGTGTCTTTGGTGGCTGACTGCAGGCCCTCTGAACTCTGACTTTCTTCAACTAGAGGACTGTGTTTCTGAGACGCACATATTAAAGTGGAACTCCTTTGGATCCCAACAAAGACCTTCACATTGGTGATGGCTGATTGTAAGTGAATAACAAAATGAAATTGTACAAAATGCACAAGTTTTAAAGAAAGCCCTAATTTAATTAGGTTGGATTTGGGTTCACCAATTTTAACAATttcttaaggtgctttcacatttACCagtgtttatcatttatttttttattttatttttttttggagagGATGATATCCAGTCATTTCAGAAGGAATCTATGCTAGGGGAAAGATTTATCTTGCAATTTAAGGGGCCTTCTACACAAGAATGTCAAAACAGCCAAAAAACGGGAAAATTTTTTATATGgtttgcctgtttgtttacagGACAAGGTGATTTTTCAGCAATGAAAATGTGTAAAATGGAAAAAGTGGAGGTTTTTGAAAAGACAGTCATGTCATGTCCGTGTAAACacctgaaaacaaaaagtcattgAAACCTTCATTACATGCCGACGTAGTACTATAGTTGTTTAGGTAagcccgtagccagggggttcGGGTTGTTCGAAAGACCCagccctcactgacaaaggtccagaatttgcccCATACATGActtcatttgtcctattttgactgctgtgCAATCATACATTGTAAACATACAATCTAAtataagtgaagtcatctttcactactgtattgtttttaccaggaacttttattttaaatcttgaaccttattcttgaaacaaaaaaagacCAATGCTATGGTGTCAAGCACCAAAAGCGACCATTTGGCTATTGTTGTGaaccatgaattttcaaatgtacttttttggtaatgatgaccatctgacaatctatttcagataaaatattacttaaaatgtcactaaaatgcagtatttaaatcttataATTAAATAGTAGTCTAAATGAGGACTATAACcacaaaaaggtccacattttggGAAAAAAACACTGCTTTCAGCAGGCTGGCTACGGGTATGTTAGGTGAGTGTAGATTAAGGCCCAATCCtgattctatttttgtacccctaccccttccccttggcccttacaaccgagggtgaagggaaagggctttaaaatgtacccctaagaattgggacagcattacagcacctgcacacgtcatcatatgtcatcgcgatctttTGTTTCATATGAGATTAGTgttttttattggtatttatcttcaggaaatcactgaaggcatatattatgttatcataaagatctaatgtggcaaaaaaaaatatcataactgtactgtgcatttgcaCAGAGGCCATATTCATGTAAAgataccaaaaacaacattattattaaagcAGACAcagtaaaaagcccattcccagcaaCTAGatattactgacagggtattcgagtgtcatcgagtgacaaaATGTTGTGGAACTGCAgtacaagagttattattatggattatagatcggAAAAAATTacgaatttttaatttttttaagcatgacggtaaagcatgaacgcggttatgaatatattaaaacatgtgcttgttttttgtaaaaaatcataATACTGACagaaatactaatttgtggatctccttactttcgGTTGCAGTGATtttgccgttgtggctggtggaTTCAGAGAAATTTTCTTAtaccttggttttgagtgtggtcctatAAAAAAATTCGAAGAGATATTCACCCCTTGTCCTTAGCtttacgccttcaagctaaaaagaaaTCGGGACACCCCTATCCCTTGATGTGAACGTGCAAAAAAGGGGTAGGTgtaaagggaagggctaaggggtagaattgtgaTTGGGCTAAAAAGCAAGCGCAAAAATTGAGAGACAACCATGTGGCAGACTATGTGGTAGTGTTGTTACTAAAATGTTTTCTAATGCTTGATCAGCAAAGTGTGTATTTACGTTACAGTATGACGTAAATACACACTTATAAGTTGAGACACACACTGCAAATTATACATAGAGATGAGCACCAAGCTGCTATCAACACGTCGTCTTCTCTACAGGTACTGCAGGTACAGCACCAAATACTAGCCTGGCATATGTAAGTGTTTTTGGCcatttttgtgaatttgtgtAAAAGCAGatcattttgaaaatgacttGCAGGTGGAAAACTTTTCCATTATTGGCTAGGTCACTGtcatgtaaatgcagccttagctTGTTATATAACCCTTATTTTACCAGGTAATTTAATTAagaaccagttctcatttacaatCACAAACTGGCCAAGGGGCAACATAAAAAGCAAATGCGGAGCAATAAAGACACAATACAATAATTTCACAGATGCAGATAATAACTTATAAAACCaaggaaaaactaaaaataagCACAGTGATCTTGTTACTGGATAAAATTTTTATTAGAATCACTGTTCACCAACAAAACGGTACTCAGTTTGAAAGTGACTACAGTGTGACCTGTGCTGTACTATTGACAATGACAATGTTTTACCCATAAATATTTTATGTGACCTTAACATTGCGGAAAAAAATACCACATTTTTAAAAGCTGGGATATTTTTAACTTGGCATAGCATTTTAAAAGTGACAATGTAGAGGTTGTTTTTATGGTCTAAAGTTATACATCTACTATAATATTGTTAGTACTGTTTTAATCTTTTGAGCAGATATGGCAGATATTCTCTGTGAGATGCATTAGAATACagttaaaatgctatttaattgATGTTTTCAAGGCAAAGCATATCTCTGCATTCCTGCATTCCTGTTTGATATTTGTATGAATAAGATATGATATTCAGTAATGCCACACAAGCGTTGTTTTCCTGAGTATTAGTGACTGAGAGATGTATACATTAATATTTGGGTGACAAGTGTACATTCTAAACACAGTGTTGTGTTAATTCTGTTTCGCTGATGAATGTAGTTTCTTTGCATAACTTTAGTATAGCTTAGAGCAAATCAAGTGCGCCAATGATTCAATAATCCATTCATAAAGGCAGtcacatatttaaaaacaaataaaaattaatcagCCATTTTGAACGAATCGATTGATTTCAACTCGGCCTCTTTCTAATTATGtaatgctatatacatttctggagagagcaaaatagcTCTCAGGAGctgcaatttattattattttatttattattattattttattttatttattattgcagatttagttttttttttttgcaaatccaccagaggcagatGTGTGCGCTCTTTGTGATCTCAagtttctcttgcgagtgccatttgtccCTGCTGTTCTTGCaaaaatccaccaaaggccacttTCAACTTATTGACTAACCAACTGACAGATGACCCTACCCTCCCTGTTCtgtaaacccaatcaatagtgttttaaaaagcaccaattgacctgcccacccactttcctaaacccaaccaaagatccagaaaaagaaaagccccctgatttttaccacattttcagattttaccacattctcaccttattatttacttgtttattttatttttagcttttgtttttgtcttatctgctttctggaaccattctttaccATACTCGAACTCCAGTGTTgagtcaactctgctctgcatctcaagtctgccgacgtacatatCGAACTATGGGAAaaaccaatgcaatctcacgccaattcgtaattttttgatttagtggctaattcgtatgaattagcacAATCTAATTCCTATAATTTACTACgtatttgctcatcacccaatgacggttggggttagaggtagggttgggtgccacgcctcctttttaaaatcgtacattttcataggACTTATTTTGTTTAGCCACAAAAcgaacaaaacgtaaaatacttgcgtttcctcgtgagatctggctgaacaaactggtaacagcggaaaactCATTCATATGGAGGTAATCAATGAGCTGGTAAGCACACAAAGGAACAGCATTTTacctgtagcgtttgttttaaagataaaacgGAGCCATACGTAGCTTTGGTTACAtaatttgctctctccagaaatgtacatagggctatgttttcagaatgagcctttgttgatTAAATTAGTGATTTAACAATACTCGTGATTTAGTGTCACATATTTTTAAATCCAAAATGACCTAAACCAGCTGAGATACCATTATAAAAGCacactcaacaacaacaaaaaaatattaaaagcctCCAAAAAATATCAAGGTCAATTTTTCCCATGCTTTTAGTGCAAACTGCTAATGAGATATTGCAACATTTACTGAATATCTTCTGCATTTTTTTGTTTCGAAACCAGTAGTTTCGACAGTAATCTGTGAGATCTGTTTGATGTGAGGTTGAAAAACTTCCCCTATTAGATTCGGCTACAGTTGCTTCTGCAGTTCATGTGAATTCAGCCTATTGACTAGCAGAGAAATCTGTTTGTGTGAAAGTGAATGTTAAGTGAGCTTTGATTTATCCATTGCCTTGCTTTGGACATTTTTTTGCCCACAAATTCATTATTAATTGACAATTATGACTCATCCCAAATTTGTTATATGCAAAAGACTGATATCAAGCTGGGAGTCTCCATCACCTTTAGTTTCAGATCAACTTTTTATATATTACTGAGAATACTTTTTAACAGCTTTTAACAATACAACTGGAAAGAAACTCTCACATATTGGTGTTTTCCTGTATCTTGTCATTTGTTTTCCCTGAAGGTGCAACTGACTTCGCTTCTGAGAAAGGATGATTTTCTTGTTTAGAGGACTGATAAATGGTCTCCTAGTCCTTTTCGTCCCATACTGTCTAAAAGGACAAAATGAGTGCACAAAGACTACCTAGACTGTTCTCTGATCAGCTGTTGTTAGTTCAACTGATCTCTGCTAGTACTAGTCGCACTGGATGTGTAATTTTACTCCTGACCCTAGACCTGAGCATTAGGCTGCATGTCACTGAGAATTAGGTTTGCTTGAAACTTATTGCTATGAAGGACTATTTTGTACACATGTAACCTTAGAAATTATGTAGTTTTGGATGGGACTCTCAGAGCATTTCCATCAGTATAATAAACATGGTGATGAATAACTGTT

Function

symbol description
prkd2 Predicted to enable ATP binding activity and calcium-dependent protein kinase C activity. Acts upstream of or within endocardial cushion formation. Is expressed in brain; gut; and heart. Orthologous to human PRKD2 (protein kinase D2).

GO:

id name namespace
GO:0089700 protein kinase D signaling biological_process
GO:0006468 protein phosphorylation biological_process
GO:0003272 endocardial cushion formation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131120-142 Predicted to enable ATP binding activity and calcium-dependent protein kinase C activity. Acts upstream of or within endocardial cushion formation. Is expressed in brain; gut; and heart. Orthologous to human PRKD2 (protein kinase D2).

Ensembl:

ensembl_id ENSDARG00000104676

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016738 False 1946 mRNA 0.50 12 11825366 11870530
TCONS_00016739 True 6355 mRNA 0.38 8 11840311 11875820

Neighbor

gene id symbol gene type direction distance location
XLOC_008347 FO704748.1 coding upstream 4817 11814969 ~ 11820549 (+)
XLOC_008346 strn4 coding upstream 67719 11693624 ~ 11757647 (+)
XLOC_008345 NA coding upstream 133906 11683089 ~ 11691460 (+)
XLOC_008344 slc1a5 coding upstream 154193 11643659 ~ 11671173 (+)
XLOC_008343 BX324136.1 coding upstream 259857 11565391 ~ 11565509 (+)
XLOC_008349 gpr184 coding downstream 7984 11883804 ~ 11909082 (+)
XLOC_008350 CR848025.2 coding downstream 106630 11982450 ~ 11986634 (+)
XLOC_008351 NA coding downstream 128983 12004803 ~ 12009399 (+)
XLOC_008352 FO904901.1 coding downstream 154547 12030367 ~ 12054746 (+)
XLOC_008353 NA coding downstream 183420 12059240 ~ 12362508 (+)
XLOC_008463 BX663520.1 misc downstream 9376371 21252191 ~ 21252282 (+)
XLOC_008340 CR538726.1 non-coding upstream 520292 11303325 ~ 11305074 (+)
XLOC_008339 BX323573.1 non-coding upstream 958806 10863850 ~ 10866560 (+)
XLOC_008338 NA non-coding upstream 1070601 10752071 ~ 10754765 (+)
XLOC_008356 NA non-coding downstream 631979 12507799 ~ 12525596 (+)
XLOC_008357 NA non-coding downstream 744287 12620107 ~ 12621628 (+)

Expression


Co-expression Network