XLOC_008351


Basic Information

Item Value
gene id XLOC_008351
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 12004803 ~ 12009399 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018896
aaaatactttatatataagAGCAAAATTTGTATTGGGGGAGTACCATACTGTCATACATCTAGGCAGAGATTGTCGAAATATAATGAGAATtatatttaacttgtttttttacaataaacattttaaaaatacaaataagtaAACCTACTAGAAGATGCAACATGACCAGAAAGAGTTCATTAATCCTTATCTCAACTTTGAAGTGATGAATCAGAATTTCACCTTTCTGTTTTATTCAATGAAAAGTTATATAGTAGTATAAGCAGCCTTTTTTGCTtcagtataaaaataataataaaaaatctggtCACAGATATAATAATGCTGGTAAAGGACATAATCAGTCTATAATCTGAAAGGCCTCTCTCAGGCTCTCTAGTGCCTCATTCTGAGTAATTTTCCCCCATGCTTCAGGCAATTTTGCAGGTGCACAAAGATATTCCTGAGCAAACCTATCATTGTACCTCATGAACACGTATCTCCAGTAGGCGGCAGCCCCATTATTACCAGGGTCTTCTGGGTAAATGCTCCAATCTGGATAGATGGACTGGTACTCCTTAAAGGGCAGAGACTTGCCCCCTGTGTCTTTGTTTTGAAACTGGTTTGGCCCTGTAATATCTGCTGAGCAGGTGTTGTGGGACAGTGTTGTGGAGTTGGCATCAGTATAACAGACCAGACCTTTAGGGCGATGCACAGCAGCTTTGTGCACTTGATGATCTTTTTCATCTAGGTCACATGGAGCTTTGCAGAAAGGACAGAACTTATTACAACCCTTCACACTTTCATACACCATGTCCTGGAGTTTACTGGGGAGGTTATCAGGGACTTCAATGACATCCTCATTCTCCAAAAATTCCTTAGCTATTGACGAGGTCAACTCAGAGACTGAATCCTGAAGGCTTCCAAGGAAGTGCTCAGGGTGTGTATTTATGTCAAACAAAGGTTGCTGCAAGATTTGAGTTGGCATAGTTATTTTTCCCAGACTCTCGAGGTTGATGCAAACTTTTTCCAGTAGTGTTCTAACATTGATTTGTGCCCCACTATTAAATTCAGACAACTGAGTAATGCACCTCTTCACCCAGTCAAAGATCTGGTGCATTCGCTGTTCCCTTTGGTCTTCTATCATAACAGAACCTGACAAATGAGCTTTGATAAAATTATCAATACTCTTCTGGCTGTAGGTCTCATGGGACTTAAGGTACTCATGGAAATTCTCAAAGCTGTCCTTTACCAGCATTTCTTTAAGAAGACTGTAGTGGAACTTCTTTGGTGAGCTAAAATGATGTGCATTTTTCTTACTAAGCATATCATAAAATATCTGTCTCTCCAAGCTGCTGTAAATGAAATCTTCGGCAGTTGGCTTGAGGCACAGATTGGTGAAAGATCGAGCAGCTTTTTGACACTGGTACCTCTTTCGGAACTGATGTATAAAATTCTGCATGTGTCTGTCCTTGGTCTCAGTAAGGAAAGTCTCTTTAATTTGTCTTTCCCCGAGCAGCTCATCCTGCACCTCTTGAAAAGACCGTGCTGCTTTACTACAGATGTATCCTTTGATATCCACTTCAAATTTGGGACTCATTGCAAATTTCTCACTTTTTAAAACCTCTAGACCCTTGTCGACAATTGCAAGCAACTCACTCATATAGCTATCAGAGTAGCTCTCTTTGTGCTTCAGTTTATCTGAGATTCTCACATCACAGTCTTCAATCAAATTATTGGCAAATCTTTGTGCCACATTTCTATTGTACTTCAGTGAATTCTTCATTCTACTACTCAGAGCAAAATGTGCAGTCCTCACCTCAAACCCATTGAGCTGGTTTGCATTGTGGAGTGTGATGTTTTGATTTCTCAGACCACGTCCACTTAAATTTTCCTTTAATTGATCCACCATCCTTGTAAGGACTTCTTGTGTTTCAAGAAGGGGTTCCCTCAAGTTGGATGGAATATCTTCCCAAACACTAGCAAATTCACGTTCAAGCTCCTTGTCTTCAATTAAGCAGTTGTTGTTCTTGCAGGTCTGCAAGAGTGAACGTAACTTTACCTCCAAGGCTGCCTCAAGGGATGTCAACAAAGCTTGCATCTTAATCGACATATCATGGCGAAGGGTTGCAGACTCAAGTTTCTGGCCAACATCAGATGCCAATTGCTCTTGAATGACATCTACTGTTTTTAGAAGGTTTACTTTGTAATTTTCCACTAGGGAAATATCAATATCCTCCTGCCTAAGGTAGTCCCACAGGCTTGCCTTAATGTGGTCTCTTTCTACGCTGATTTGGCTAGCTGCTTCATTTTTCAAGATTCCAATAATTGCATCTGAATCCAAATtctgttcattttcttttaactCTGTTATGTGATTTTCCAATCCTTCGACCCAATGGTCCAGTTGATCACTGAGGTGCTTTTCTCCCTGTACAAGTTTTGTGCAGAGGCCAATGATGGGATCTGCTTCTCCTGTGTCACCAAACTTCATAGCAAAATTTCCACTTTTCACTAACTCCCACAAATTGCACATAAGCTCCATAAATGCACCCAGACAGGTAGGCAGACCATTTGTTGCCTTTTCATGGAAAATAGTCAAAAGGTTTTTCTTTAGCTTGAGAACTGCATCACTGTATACTTGATCATTTTGGGAAGTCCCAGGTGACAATTTATGGCATAGGTCTCCTGTTTCACTTGTGAGAACTGTTTCTCTTTGAGACATATTTAGAAGCCCTCCTTTAGTCAGTACATCAATTGCATATCTCATGATTTGTCCATCCTTTCCAGCTCCTTCAGACATAACATGAAAGGTAGCCTTCTTCTCCAATGTTTGTGTGAAAATAAGAGCATTGACTGCAATCTGAAGGTTGCGTCTTGTTTCATCCTGACCCGCATCTGTTGTGAAAACCTAAGACTGTCAAGACTCTCATCCGACTGAAGTTTGGCAGTTGCCTGTATAATTCGTAAAGAACACTGTACACCCAGTTCAGGGGAAATACTGAGGCATTTCCATCATAGAGCTCAAGGGGAACTCCATACAGGAGTAATTCAGCACCTACATATGGTAAGCGGAACATGTCATACAAGTCACTGTTCGGACTACGGAAGTATCGTTCGTAGACCAGTCCCATCTCTCTAAGAAAATGCTCAAGTCCAATGCAGGGTTCTTGAATTTGTTCCTGATTTGTTTCCCTAAGAAGGGACAGCTTTTCCAACTGCATAACTTCAAGTTTCACCCTCATCCAAGAGAGGAAATATGCCCTCTTATTTGTTTCAGGTGAACAGACTGCTTCAATAAAAGCTTTCATGGCTGTTGTTAATTTATATTCAAGAATTTGTTTTATGAGATTTTCCTTTTCCTCAATTAAGTTCTGATTTGCATGTTGCTGTTGACGTGCTTCCACTTTCTCCACATGACACAATTGTTTCCATACATCACCCTGTAGGGGCAGTTGGTTTTCCAAATAGGTAGACACTCCATCTTCGATTCCACTGAGGACTTCTTCAACTTCACCGAATGCCGTTCGACAGATCTCATCTTCATCAACATTAATGTCGAGGTCATCGGCCATGCCAGCAGTACCTACAAGGCTTGAGGTGTGCAGGTATGGAATAAAACGATTCAGAACATCTCTTAAACTTTTAGCAATTTCATCCTCATTACCTTCCCATCCATAAAGCACTGTCCCTTCAGGCAGTTCTAAATCCCTCACCAATCTGTGTTTCATTTTCTCATTATCATTCTGCTGTCCATCATTTACTGATGTTGAGCTGTCAATTATAATCATGTGGCTAGTAATATTTCTCCATGAGACAAGCAATTCTCTTTCCTCGGCACCAAAACTTTCACAAAAAACAATAAGGACTGCAGATGTGTAACACAGAAGACTCATCTGTTTTTCATAGTTAGCTGCATCACCACGCAGATTAGCTACAAGCACAGGGCGAGAAAAGGCGCTTTCATGATGGTCTCCTGATGGCAAGTTCCAACATACCTCCACCAGACCATCTGAGAGAACTCGAGGCAGCTCCCCTCCTTTCATACCACAGTTTATGAAGGACTCGTTTAGTTTGTGTGGTCCACCAAGAACATGGTTGAGTACTCGAGATTTTGAGACACTGCAGCTGCCTAGCCTTACTGCAGAGAGAAATGGCATCCTGGAATTTGCCATGTTTTTCATTGTAGGTCCCTCAGAAGGGGACTTCCACTCTCCGAGAACACCTCTAAATGGACTCAAGAGGATGGTTCCCTTCTTTTCTGGGTGAATAGGTGGAAGATACAGAGGTACTGCAAAGTTGGACTGCAACATTCGTTGGGCTATTTCTTGCTGTAGGAAACTATTTGTGGTCATGTAGATGACGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018896 True 4346 lncRNA 0.41 2 12004803 12009399

Neighbor

gene id symbol gene type direction distance location
XLOC_008350 CR848025.2 coding upstream 18169 11982450 ~ 11986634 (+)
XLOC_008349 gpr184 coding upstream 95721 11883804 ~ 11909082 (+)
XLOC_008348 prkd2 coding upstream 128983 11825366 ~ 11875820 (+)
XLOC_008347 FO704748.1 coding upstream 184254 11814969 ~ 11820549 (+)
XLOC_008346 strn4 coding upstream 247156 11693624 ~ 11757647 (+)
XLOC_008352 FO904901.1 coding downstream 20968 12030367 ~ 12054746 (+)
XLOC_008353 NA coding downstream 49841 12059240 ~ 12362508 (+)
XLOC_008354 il10ra coding downstream 368488 12377887 ~ 12388434 (+)
XLOC_008355 tmprss4a coding downstream 419807 12429206 ~ 12459335 (+)
XLOC_008356 NA coding downstream 498400 12507799 ~ 12525596 (+)
XLOC_008463 BX663520.1 misc downstream 9242792 21252191 ~ 21252282 (+)
XLOC_008345 NA non-coding upstream 313343 11683089 ~ 11691460 (+)
XLOC_008343 BX324136.1 non-coding upstream 439294 11565391 ~ 11565509 (+)
XLOC_008340 CR538726.1 non-coding upstream 699729 11303325 ~ 11305074 (+)
XLOC_008339 BX323573.1 non-coding upstream 1138243 10863850 ~ 10866560 (+)
XLOC_008357 NA non-coding downstream 610708 12620107 ~ 12621628 (+)
XLOC_008358 NA non-coding downstream 991794 13001193 ~ 13136464 (+)
XLOC_008359 CABZ01009248.1 non-coding downstream 1412115 13421514 ~ 13509368 (+)

Expression


Co-expression Network