G125732


Basic Information

Item Value
gene id G125732
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 7537657 ~ 7539613 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU142769
AAAGTATTGCATACAGCAGTTGTCTTTTGTTCTTTATTGTTTTATGTTATTTGACATTAGCAACAAACCCAAATTCTGTATCAACATCACCTCTTCACAGATCTCAACAACAGATGACAGATGATCAGTTATTTCACGTGAGAGATGAAAACAGAGCACAGTTATTAACACTTCAGTCACAACTCGGCAAAATGGATGAATTGAAGAATCGGTTACAGGGAATTGTTGAATCTGGGACAAAAATCACATCTTGTATAAATAACTGAGCACTGTATTTCTATAAGCAGGCATCCATCTATAAACAGCTCCATTTATTTGATTGACTGGAAGACCTTGTGGGCCACACAGTGGTCGCGAGCATGCAGGAAGTCAAAGAGCTCCTCCGTGCAGTCTTCTGTTGTCTCTGAGCGCGAACCGACCCGGGACTCGCACGCCTCCAGCCGCTCGCGTGCGTGAACGCAATGCTCCGTCTGCTCACACTTCTCTCTCAGAGTCTCCAGAGGGTCCTGCAGAGCAAATATGAAAAAATATACTTCATCAAACTTGGTATGCAGACTTCAAGACATTATGAAGATACACATCAAATTGTGTATATCTAGAGACAAGCCAAGGTTGACTGATATAAGATATGAGACATAGAGTTCTTTATCTTGGGACTGCAATATCCAAAGTGAATAGCAGTTGGAACAAGGACACGAAAAATATAAGGAGACATGTCAGATTTCTTTAAGTTACGATAGAGGGCGCTATAACCTCGACGTGTGTGTTCTCCACACACAAACTGTGAACTCTCACAACTTATGCTTACAGTTGTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU142769 True 815 lncRNA 0.41 2 7537657 7539613

Neighbor

gene id symbol gene type direction distance location
CI01000024_07533115_07535965 NA coding downstream 1267 7532364 ~ 7536390 (-)
CI01000024_07433804_07468501 COL28A2B, COL28A1, COL28A1A coding downstream 69156 7433470 ~ 7468501 (-)
CI01000024_07424110_07430994 KLHL41B coding downstream 106663 7423927 ~ 7430994 (-)
CI01000024_07415578_07421136 PPIG coding downstream 116521 7415545 ~ 7421136 (-)
CI01000024_07413462_07414187 PHOSPHO2 coding downstream 123470 7413086 ~ 7414187 (-)
CI01000024_07549529_07561249 RAD54L coding upstream 9902 7549515 ~ 7561249 (-)
CI01000024_07566408_07567250 NA coding upstream 26665 7566278 ~ 7567250 (-)
CI01000024_07604312_07619531 ST3GAL3, ST3GAL3A, ST3GAL3B coding upstream 64699 7604312 ~ 7619531 (-)
CI01000024_07672858_07695341 KDM4AB, KDM4A coding upstream 132980 7672593 ~ 7695825 (-)
CI01000024_07697986_07832289 PTPRFB, PTPRF, PTPRFA coding upstream 158373 7697986 ~ 7832289 (-)
G125716 NA non-coding downstream 23686 7513650 ~ 7513971 (-)
G125523 NA non-coding downstream 24529 7512878 ~ 7513128 (-)
G125476 NA non-coding downstream 100299 7436951 ~ 7437358 (-)
G125459 NA non-coding downstream 160394 7377034 ~ 7377263 (-)
G125386 NA non-coding downstream 250721 7284938 ~ 7286936 (-)
G125721 NA non-coding upstream 62736 7602349 ~ 7603171 (-)
G125760 NA non-coding upstream 122807 7662420 ~ 7662630 (-)
G125761 NA non-coding upstream 124837 7664450 ~ 7664658 (-)
G125763 NA non-coding upstream 127303 7666916 ~ 7667192 (-)
G125726 NA non-coding upstream 262960 7802573 ~ 7817487 (-)
G125457 NA other downstream 179553 7357237 ~ 7358104 (-)
CI01000024_03938368_03941795 NA other downstream 3595733 3938315 ~ 3941924 (-)
G123233 NA other downstream 4982621 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 6710806 824968 ~ 838550 (-)
G125798 NA other upstream 436054 7975667 ~ 7976047 (-)

Expression


Co-expression Network