XLOC_008353


Basic Information

Item Value
gene id XLOC_008353
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 12059240 ~ 12362508 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018897
GCTATACTGGTTATGTGGCAAGGAGTTGCTAATTTAGCCACAAAGAAGAAAAACACCTGTAATCGAAagGTGAAAGAGTGCCATCCTGGTGCCATCGTGATCGTTTTCAAGAAAACTGGCCACCTTTCAATCAGATAATTTGAAGTGCTGAGCATTAATGAAAGAGAACAAAAATATTGGAgcaaggatggatgaatggatgaattctGCATTGTCAATGGTGGACTCACCTTTCCCAGCGGGCTCCACAGTCACCTTCTCGCTAATGTTGCCCCTACCAGCAGTGGTGACAGCAGCTGCCCAGATCAGATACTGCTGACCCCGGGTCAGCTCTTCACTCTGTCCCAGAACAGCCAGGACACCACACGTGTGCCAGCCAGCCGGCGACATCGAGACTGAGACAccgtgtatgtgtgaaagagagGAACAAAGACTCAGCAGATGGAGAGACAAACAGGAGAAGAGGAAAGATAACGAGAACACAAGCAGATGATCTGACAGTGGAAAGAATGGCTTTCGAGATGAGAAAACACACAGGTGACAGCGCTGAGATGAACAAACAACATAAGACACTCcacccacacacatacattccTCCCACCCCACCCACGCAGACACACATTGACACTTGAGTTGATCAGAAGCAATGATATCTGGGCTTGAGATGAGGCGGTGGAGTTCAGGGGTCAAGGGACAGGGAGGTGGTGGGTTGTAACCCTAAACGTCTGAGATTGAAAAGTAGACAGGCACCTCTTACGTTTATGCGCGCTTGGTACTCGGCGCTACCGGCCGAGTTGCGTGCGGCGCAGCGGTACACGCCCCCGTCGCGGATCTGGGGGTTGGTGACGTTGACATGTGAGACAGTGGAGCCGTCGGAGAGCGTGTACTGGCTGGCCCGGTGCGCCGAGTCCCGCGCTACCGGCTCATCATCCAGTGTCCAGGTGATGGTGGGTGGAGGGGCACCTTTGGCTGCACACATGAGAGAGAAGGGCTCGCCAGGGGCTACCACTCGTTCACTGAAAGACGAGACAATCCTTGGGGTGCCATCTGACAGAAGAGGGAAGAGAAATAAAGACTAGGTTAGAATTGCTAAAAATCCACAGCTGAAATTAATGTGACGTGATTCAGTGTAACTAAGG
>TCONS_00018898
GCTATACTGGTTATGTGGCAAGGAGTTGCTAATTTAGCCACAAAGAAGAAAAACACCTGTAATCGAAagGTGAAAGAGTGCCATCCTGGTGCCATCGTGATCGTTTTCAAGAAAACTGGCCACCTTTCAATCAGATAATTTGAAGTGCTGAGCATTAATGAAAGAGAACAAAAATATTGGAgcaaggatggatgaatggatgaattctGCATTGTCAATGGTGGACTCACCTTTCCCAGCGGGCTCCACAGTCACCTTCTCGCTAATGTTGCCCCTACCAGCAGTGGTGACAGCAGCTGCCCAGATCAGATACTGCTGACCCCGGGTCAGCTCTTCACTCTGTCCCAGAACAGCCAGGACACCACACGTGTGCCAGCCAGCCGGCGACATCGAGACTGAGACAccgtgtatgtgtgaaagagagGAACAAAGACTCAGCAGATGGAGAGACAAACAGGAGAAGAGGAAAGATAACGAGAACACAAGCAGATGATCTGACAGTGGAAAGAATGGCTTTCGAGATGAGAAAACACACAGGTGTCCTGTGACCTCTTTGGAGCCAA
>TCONS_00018899
GCTATACTGGTTATGTGGCAAGGAGTTGCTAATTTAGCCACAAAGAAGAAAAACACCTGTAATCGAAagGTGAAAGAGTGCCATCCTGGTGCCATCGTGATCGTTTTCAAGAAAACTGGCCACCTTTCAATCAGATAATTTGAAGTGCTGAGCATTAATGAAAGAGAACAAAAATATTGGAgcaaggatggatgaatggatgaattctGCATTGTCAATGGTGGACTCACCTTTCCCAGCGGGCTCCACAGTCACCTTCTCGCTAATGTTGCCCCTACCAGCAGTGGTGACAGCAGCTGCCCAGATCAGATACTGCTGACCCCGGGTCAGCTCTTCACTCTGTCCCAGAACAGCCAGGACACCACACGTGTGCCAGCCAGCCGGCGACATCGAGACTGAGACAccgtgtatgtgtgaaagagagGAACAAAGACTCAGCAGATGGAGAGACAAACAGGAGAAGAGGAAAGATAACGAGAACACAAGCAGATGATCTGACAGTGGAAAGAATGGCTTTCGAGATGAGAAAACACACAGGATGTCAGGAGGGCAGGCAAACGCTCTC
>TCONS_00018900
GCTATACTGGTTATGTGGCAAGGAGTTGCTAATTTAGCCACAAAGAAGAAAAACACCTGTAATCGAAagGTGAAAGAGTGCCATCCTGGTGCCATCGTGATCGTTTTCAAGAAAACTGGCCACCTTTCAATCAGATAATTTGAAGTGCTGAGCATTAATGAAAGAGAACAAAAATATTGGAgcaaggatggatgaatggatgaattctGCATTGTCAATGGTGGACTCACCTTTCCCAGCGGGCTCCACAGTCACCTTCTCGCTAATGTTGCCCCTACCAGCAGTGGTGACAGCAGCTGCCCAGATCAGATACTGCTGACCCCGGGTCAGCTCTTCACTCTGTCCCAGAACAGCCAGGACACCACACGTGTGCCAGCCAGCCGGCGACATCGAGACTGAGACAccgtgtatgtgtgaaagagagGAACAAAGACTCAGCAGATGGAGAGACAAACAGGAGAAGAGGAAAGATAACGAGAACACAAGCAGATGATCTGACAGTGGAAAGAATGGCTTTCGAGATGAGAAAACACACAGATCATCACAGTTCCAGTGCCTTACCTCCAAGCCAGATGGCCACCGCAATGAGACCCAACACCAGCAGGACACCTACCAATCCACCCCAACATTTAGCAGTCCGTCCACAAGACTGCTGCCTTCTAGGAGCTGATGAAACAAGAACAAGATGACTACAACGTGACCGCACTCTCCTGCACAGCAGTTGTAAGAAGGAAACTCTTCAGTTCATCATCGTCACAGCAGTGGCAGCTGTTTGACAGCACTGAACAGGAAGAGCTGAACTCGCACTACACAAAGACAGAATGACAAGGCAAAAAAGGTCAGCTGTGATTCAACAACTTTCTGCACCACAGGTAGCACTGTTCAGCCTTTTACCGTCACTGAGCATCTTTTAATCACACTCCCCAGGGACACACTTCTGCTGGAGTAAAAGTTTTAAACCGGGAGCAATAacttttgtgaatttattttaccTTCCTTATATCCTTGTGCTTGTTTGTCCATGAATACTTTCTATTAACATATCTTTATGCTTGACTAAGACACACGCAACCTTGATGGATTGAATTATTTCAACCAATATGCAA
>TCONS_00018901
tcgttatccaccgcggtgggttctttatccataatcatcctgtttgaaatgaccgcgctaaaaaagaacctgtactgcgcatgatcggtgacctctcagtattgtttttttttttaagggggcgtttcccaaacaccgaccgagccacgcccattttacgtcgtggtaatgaaacccctggaatttagtgcatgccgtAATGGCAAGGTGAAAGAGTGCCATCCTGGTGCCATCGTGATCGTTTTCAAGAAAACTGGCCACCTTTCAATCAGATAATTTGAAGTGCTGAGCATTAATGAAAGAGAACAAAAATATTGGAgcaaggatggatgaatggatgaattctGCATTGTCAATGGTGGACTCACCTTTCCCAGCGGGCTCCACAGTCACCTTCTCGCTAATGTTGCCCCTACCAGCAGTGGTGACAGCAGCTGCCCAGATCAGATACTGCTGACCCCGGGTCAGCTCTTCACTCTGTCCCAGAACAGCCAGGACACCACACGTGTGCCAGCCAGCCGGCGACATCGAGACTGAGACAccgtgtatgtgtgaaagagagGAACAAAGACTCAGCAGATGGAGAGACAAACAGGAGAAGAGGAAAGATAACGAGAACACAAGCAGATGATCTGACAGTGGAAAGAATGGCTTTCGAGATGAGAAAACACACAGGTGACAGCGCTGAGATGAACAAACAACATAAGACACTCcacccacacacatacattccTCCCACCCCACCCACGCAGACACACATTGACACTTGAGTTGATCAGAAGCAATGATATCTGGGCTTGAGATGAGGCGGTGGAGTTCAGGGGTCAAGGGACAGGGAGGTGGTGGGTTGTAACCCTAAACGTCTGAGATTGAAAAGTAGACAGGCACCTCTTACGTTTATGCGCGCTTGGTACTCGGCGCTACCGGCCGAGTTGCGTGCGGCGCAGCGGTACACGCCCCCGTCGCGGATCTGGGGGTTGGTGACGTTGACATGTGAGACAGTGGAGCCGTCGGAGAGCGTGTACTGGCTGGCCCGGTGCGCCGAGTCCCGCGCTACCGGCTCATCATCCAGTGTCCAGGTGATGGTGGGTGGAGGGGCACCTTTGGCTGCACACATGAGAGAGAAGGGCTCGCCAGGGGCTACCACTCGTTCACTGAAAGACGAGACAATCCTTGGGGTGCCATCTGACAGAAGAGGGAAGAGAAATAAAGACTAGGTTAGAATTGCTAAAAATCCACAGCTGAAATTAATGTGACGTGATTCAGTGTAACTAAGG
>TCONS_00018902
tcgttatccaccgcggtgggttctttatccataatcatcctgtttgaaatgaccgcgctaaaaaagaacctgtactgcgcatgatcggtgacctctcagtattgtttttttttttaagggggcgtttcccaaacaccgaccgagccacgcccattttacgtcgtggtaatgaaacccctggaatttagtgcatgccgtAATGGCAAGGTGAAAGAGTGCCATCCTGGTGCCATCGTGATCGTTTTCAAGAAAACTGGCCACCTTTCAATCAGATAATTTGAAGTGCTGAGCATTAATGAAAGAGAACAAAAATATTGGAgcaaggatggatgaatggatgaattctGCATTGTCAATGGTGGACTCACCTTTCCCAGCGGGCTCCACAGTCACCTTCTCGCTAATGTTGCCCCTACCAGCAGTGGTGACAGCAGCTGCCCAGATCAGATACTGCTGACCCCGGGTCAGCTCTTCACTCTGTCCCAGAACAGCCAGGACACCACACGTGTGCCAGCCAGCCGGCGACATCGAGACTGAGACAccgtgtatgtgtgaaagagagGAACAAAGACTCAGCAGATGGAGAGACAAACAGGAGAAGAGGAAAGATAACGAGAACACAAGCAGATGATCTGACAGTGGAAAGAATGGCTTTCGAGATGAGAAAACACACAGGTGTGGCTATGCTGTTGTTGTggcaggtgtattctgggaaattttcttaccccttgctTTTGTGTGCTGAAAAATCTCCATTCGAAGGGCTATCTactccttccccttagccctatgccttcaagctaaagagtaTTGGGACTCCCCTACGCCTTCATGTGAGCGTGCAAAACGAGGGATCATCACAGTTCCAGTGCCTTACCTCCAAGCCAGATGGCCACCGCAATGAGACCCAACACCAGCAGGACACCTACCAATCCACCCCAACATTTAGCAGTCCGTCCACAAGACTGCTGCCTTCTAGGAGCTGATGAAACAAGAACAAggaaaaccggagcaccctgaggaaacccacttAAACactgggagagcatgcaaactgcacagaaacaccaactgac

Function

GO:

id name namespace
GO:0017119 Golgi transport complex cellular_component
GO:0099023 vesicle tethering complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko04810 Regulation of actin cytoskeleton
ko04972 Pancreatic secretion
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018897 False 1139 lncRNA 0.51 5 12059240 12117730
TCONS_00018898 False 563 lncRNA 0.48 6 12059240 12121438
TCONS_00018899 False 565 lncRNA 0.48 6 12059240 12128436
TCONS_00018900 False 1106 lncRNA 0.46 7 12059240 12362508
TCONS_00018901 False 1277 lncRNA 0.51 4 12060989 12117730
TCONS_00018902 True 1076 lncRNA 0.49 7 12060989 12357009

Neighbor

gene id symbol gene type direction distance location
XLOC_008352 FO904901.1 coding upstream 4494 12030367 ~ 12054746 (+)
XLOC_008351 NA coding upstream 49841 12004803 ~ 12009399 (+)
XLOC_008350 CR848025.2 coding upstream 72606 11982450 ~ 11986634 (+)
XLOC_008349 gpr184 coding upstream 150158 11883804 ~ 11909082 (+)
XLOC_008348 prkd2 coding upstream 183420 11825366 ~ 11875820 (+)
XLOC_008354 il10ra coding downstream 15379 12377887 ~ 12388434 (+)
XLOC_008355 tmprss4a coding downstream 66698 12429206 ~ 12459335 (+)
XLOC_008356 NA coding downstream 145291 12507799 ~ 12525596 (+)
XLOC_008357 NA coding downstream 257599 12620107 ~ 12621628 (+)
XLOC_008358 NA coding downstream 638685 13001193 ~ 13136464 (+)
XLOC_008463 BX663520.1 misc downstream 8889683 21252191 ~ 21252282 (+)
XLOC_008345 NA non-coding upstream 367780 11683089 ~ 11691460 (+)
XLOC_008343 BX324136.1 non-coding upstream 493731 11565391 ~ 11565509 (+)
XLOC_008340 CR538726.1 non-coding upstream 754166 11303325 ~ 11305074 (+)
XLOC_008359 CABZ01009248.1 non-coding downstream 1059006 13421514 ~ 13509368 (+)
XLOC_008360 CABZ01009247.1 non-coding downstream 1162366 13524874 ~ 13524988 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G438423 NA non-coding CI01000308 null 927666 ~ 931002 (-)