XLOC_000837 (BX927298.1)


Basic Information

Item Value
gene id XLOC_000837
gene name BX927298.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58160151 ~ 58173589 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001335
ATGAGTCTAAAGAAGAGAGAAGATGAGGACTCTGACTCTGAAATGTGTTGTGCATCTCCTGGATCAGGCTATGTGTCTCCAAAGAGTGATCGGTCCATGGAGAAAGCTCCTCCTGCCCTCAATAATGCATcagtgacctctgacctcagTGTAATCAGGAGGAAGAGACCGAGATCAGAGTCTCCAAAGCCCAGTGGTGTTTCTCTGAAGAGTGGCAATTCTATGAATTTTCCTCCGCTATTGAGTGATGAACCAGTGACCTCTGACCCGCAGTTAGTATTACTTAGTATAATATTTCTTACACACTGTAGGACAAATCAGACTAATAactgtttttaaacaataaaccCTTAATACACCTCAAATTGTTTACTAATTTAAAATTCCTGCTCCTTTAAGGAGGACAAAGATACTTAAGCTGATCACACCAGTGCCAAACTCGACACCCAACTATCAGACTCACAATATACAGGACAACACTGATGCACACATGCTAGAGACTGGAGACCTGCAGAGAGTCAAAgaccagcacaaaaccagcatgaagatcaaatatgagagattatttgagggaaacACACTCCAAGAGAACCAAACCCTCCTGAACCAGATCTACACCCAGCTGTACATCATAgagggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagaaaacagCCAGAACAAAACACTCCCAACACACTCCaatctactgcaatgacatctttaaagagGAGAAAGAGCAAATCAAGACTGTTCttactaaaggcatcgctggaatcggaaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcagagatcatcagtacagtcttcacacacttctgctggactttcatcctgaacttgaagatctggagcccaagatttatgaggagtgtaaagttgtgttcatctttgatggtctggatgaaagcagaatcacactgatgttttcagACGCTCAGAAAGTTTGTGATGTGACTGAgacttcatcagtggctgtgttgatgtcaAAGCTGATGAAAGGAgagctgcttccctctgctctcatctggatcacctccagaccagcagcagccaatcagatcccctccaaatacatcaagcgtctgacagaaattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagtgagcagcatcaagccagcagaatcatctcacacatcagaagagcaagaagcctccacatcatgtgccacatacccgtcttctgctggatctcatccactgtgcttcagaagctcctggaagaagatctgagtgcagaaatccctcaaactctgactgaaatgtacatccacttcctgctgattcagatcaacatgaggaatcagaagtatgaagagagagaaccagagaaactcctgcagtccaacagagaaGTGATtgtcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgaggaggacctgattgagagcggcgtAGACGTCTCTGACgcctcagtgtattctgggatttgcactgagatctttaaggaggaatctgtgattcagcagaggaaagtctacagcttcatccatctgaGTGTTCAGGAGTTCCTCGCTGCTTTCTATGTGTTTTATGTTCATGTAAGCAGCACTACAGAAGCATCTTTTGATTCACTAGAAAATCTCCATAAAAGAATCATTGATAAAGCTACTGAGGGTAAGAGTGctcatctggatctgttcctgcggttcctgctgggcgtctcactggagtccaatcagagactcttgcaggatctactgacacacacagagaagagctCAGAGAGCATCAGCAGAagcacacagtacattaaagagaAGATCAGAGATGGACATGGACTCTCcactgaaagatccatcaatctgttcctctgtctgctggaagtgaaagatcagactctgtccagagagattcaggagtttgtgaaatcagacaaacagtcagagaagaaactctctcctgctcactgctcaacaatcgcCTACATGCTTCAGATGTCAGAGGAAGTGCTGGATGAGCTGAAGCTTCAGAAATACAACACATCAGATGAGGGCAGAAGAAGACTGATACCAGCCGTCAGCAACTGCACAAGAGCTCTTCTTGCTGGCTGTAATCTCTCTGCTCAGGATTGTGAAATTGTGTCGTCAGTTcttcaatcctcaaactgtgtcctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagctgctctctgatggactgaagagtccaaactgtcAGCTGGAGATACTGAGgttgtctggctgtatggtgacagaggaaggctgtggttttctatcTTCAGCTCTGAttcaaacccctcacacctgagagagctggatctgagctacaatcacccAGGACAATCAGGAGTCCAGCTGCTCCAACACACACTGGAGGATCCACACTACACACTGcagaaactcaaTTTGGACCATGGAGGACCTTTTAGCATGACACCTGGATTGAGAAAATGCAAGTTCTTTCTCCTTCtctttcacacagacacacacacatgcatacagtaTATGATAAATAGATGATGTTATTTGTGCTCTTGTGTTCAGATGCCTGTTTTCTcacactggatccaaacacagcacatgaTCACCTCGTGATGTCTAAGAATATAAAGGCAACATATGTGAAAGATCCTCAGCCGTATACTGATCATCCAGAGAGATTTCAGTTCTTTGGGCAGGTGCTGTGTAGAGAGCCTCTgactggacgctgttactgggaggtgAAATGGAGCGGCTCTGGTCATATAGCGGTGGCTTATAAAGTAATCAAGAGGAAAAGTGGGCTTGACTCTTGGTTTGGACTCAATGAAAACTCCTGGAGTCTGCACTGCAGTGATAGAAATTACACCGCCTGGCACAACCATAAGAGCACTGATATTATTGCTCCTTCAGCTTGTATTAATAGTGTAGGAGTGTATGTGGACGTGCCGTCTGGCTCTCTGTCCTTCTACAGtgtctctgacacacacacactcacacacatacacacattcaacaCCACATTCACTGAAGAGCTCTATGCTGGATTTAGCGTTTATCCTGAATCTTCAGTGACTCTGTGTCAGATTTAAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096363

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001335 True 3264 unprocessed_pseudogene 0.45 6 58160151 58173589

Neighbor

gene id symbol gene type direction distance location
XLOC_000836 si:ch211-15j1.3 coding upstream 4174 58150000 ~ 58155977 (+)
XLOC_000835 si:ch211-15j1.4 coding upstream 14786 58137020 ~ 58145365 (+)
XLOC_000834 si:ch211-15j1.5 coding upstream 28137 58116900 ~ 58132014 (+)
XLOC_000833 si:ch211-114l13.1 coding upstream 57169 58091659 ~ 58102982 (+)
XLOC_000832 si:ch211-114l13.13 coding upstream 71202 58079053 ~ 58088949 (+)
XLOC_000838 si:ch211-15j1.7 coding downstream 2434 58176023 ~ 58179756 (+)
XLOC_000839 si:ch211-15j1.1 coding downstream 8811 58182400 ~ 58187215 (+)
XLOC_000840 si:dkey-222h21.11 coding downstream 20679 58194268 ~ 58197406 (+)
XLOC_000841 si:dkey-222h21.12 coding downstream 32315 58205904 ~ 58216018 (+)
XLOC_000842 si:dkey-222h21.10 coding downstream 47783 58221372 ~ 58226861 (+)
XLOC_000829 BX469930.2 non-coding upstream 142787 58003615 ~ 58017364 (+)
XLOC_000826 NA non-coding upstream 228559 57926893 ~ 57931592 (+)
XLOC_000822 NA non-coding upstream 417715 57742079 ~ 57742436 (+)
XLOC_000819 NA non-coding upstream 447915 57710298 ~ 57712236 (+)
XLOC_000818 NA non-coding upstream 594915 57541116 ~ 57565236 (+)
XLOC_000864 NA non-coding downstream 404330 58577919 ~ 58585132 (+)
XLOC_000865 NA non-coding downstream 412764 58586353 ~ 58595767 (+)
XLOC_000871 NA non-coding downstream 473096 58646685 ~ 58669075 (+)
XLOC_000874 NA non-coding downstream 604464 58778053 ~ 58782292 (+)
XLOC_000876 NA non-coding downstream 679581 58853170 ~ 58854377 (+)

Expression


Co-expression Network