XLOC_008375 (si:ch211-149e23.4)


Basic Information

Item Value
gene id XLOC_008375
gene name si:ch211-149e23.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 15173611 ~ 15218956 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016780
cacacacacaggcagctGAGTATGACCCACAGTCTAACAGcttcaaccacacacacacacacacacactggcagatACATTCAAGTAGTTTTTTGCTCCACTTGCCTCCTTTAATGACTTCAGCATGGGTCtgccaatattttttattttaggaatGGCTTCAAAACTTGCTCTCAGCATGAAAATGCAAGatGAGGAGCCCAGAGACTTGGTTCTCAAACAAACGGTTATAGGGATATTGGGAGAGGAGGTCTACCTGCATTGTTTATACACCGGACAAAGTCAAATCCTGTTCTCCTCCTGGAACCGTCTGGATTCAACAATGAAAGCAAAGAAAATGGCAGGCTACAACTATATGAAAGGTTTTAAACGAGAAAACTTCGACATTCCAACATCAGCTACTAACCTCACTGTGAGGATAGACGTGGCAAGTCTTGATCAAGAAGGGGAATACACCTGTGTTTTTAACTCTGAAGAAGATGAAACCAAGGGAGCAATGACTCTCAGTGTTATTGCTCGGCCTGAAATTGACATAACCGTGAAGGAGGAAGTTGTGAACAGGACCGTCTACCACGCTGTCACTTGTTCAGCCTTCAGTGCCAAGCCAGAGGCTGTGATTAGATGGGAGATCGCTGGTGCCCTTCCAAGAGATGACATCTTCTCCACGAACACCACTAATGCAATTCATCCCAATGGCACAAACAGTTCTGTCAGCATACTTCACTTCCCCCTGATTATGAATAATGAGAGCACAGTTACCTGTGTGGTAGAGCATCCAGCGTTTACCGAGCCTAAAAGAGTCAGCATTGAGGTTGACACATTTGATTCTCCTGTTGTGAGCATGGAGACCGTCCTGATCCAAGAAGGAGGAGAAGACTTTCAGGAGGTCATCTGTAGAGCGACAGATGGCAGACCACATCCTAATATCACTTGGAAACTTCCTGAATTTAGAAACACGTTGCTTTTACAGAGAGACATCTCAGAATCAGACTCGGTTGTCAGTTCATATCGGTTTCCATCAGATTCTTATGAAGGAGAAAATGTGTCTTGCATTTTTGGCTACATGTTTTTCCCTTTCACAAGCACTAGGACAATCACCTTGCCTATATACTATCTGTCCTATATTCAACTGAAGGACTTCGATCATGCTGTTAATAGTGAGAATCAGACGGTATTGGTATTTCAGGAGGGGGACTTCGACATTTCAGTTGGAATGGATGTTAGAGGCAACGTACCAAGTTATAAAATGATCTGTTCAAGGGAAGACCAACCACTGCCTGAGGATGTAGATGTGGTTGGCAACAATATCTTTATCCGAAGACCTGTAGATGTGCATCTTGCTGGAGAGTATTTGTGTCAGGCTTCATACCGAAAACATCGAGTTTCCCTGAGGTTCACAATTGAAGTAAATCCAAAAGTCATGTTGCCAGTGACATTTCCTCCAAATATCAGTGTGGATTTGGTAGAAAAATCTGATCACATTCGCATTGAGTGTTTGGCTTCCAATGCAATTCCTGCAGCAAGCGTGTCCTGGGTTCTTCCCCAAGAGATCAACAGTACTGTTCAGTCTGACGTCACATCCTTTAATGGATCCTTTTCTGTCAGAAGTGTGTTGAATGTGCCTACATGCTTGACCCGTGAATATGTCATTGAGTGTGTAGTCAACCATACTGTCTTCATGGAACAAGAGAGCCGGCAGATTGCTCTTCCTGTGTGTGCTCCACCCAATATTACCCTGCAGTGCAGTACTGAATGGGACAGTGGTGTTGCATACGTTCAGTTGGTGTGTTCAGTGCAGAGCCAGACTCCAGTAGTGGCCATTAGCTGGGCTGCACAGTGCCTTGGCAATGACATCAGCTCCAGTCAGTTTGAAATGAGTCAAACCCAGTTTCAGCCAAGTCATATGATTGCTGCTCAGAGCGTGGCACGTATTCCTATTTACACTCATGGCGGATGCAGCGTGACCTGTTCGATCGAGCTTCAGGGGTTAGAGAAACCAGAGAACAAAAGCATTGTCCTCCCATCCTTAGGGCCGTCTGCAATCCTTGCATTTGTGGCTGAAGAGAGATACACTCATATCTGGCATGCAGTGTGTGGGTACAGCGGTTATGGAGTCATACCCAACATCTCCTGGATCCTTCCTGAAAACGATGCTGCAGTTCAAGCAATCACTGAGTACAAGTACGATGGAATTAAAGTAGAAGTCAATTCGACTTACGAATTTCAGCTCAACCAGTTCGAGGGGAAGGATTTGATCTGTGTGGTCCAGAGAGAGCTCGACTGGGAAGAGAGACGGACAATACAAGTTCCAAAATTCTATATCTCATCTGTTGAGGTTTTAAACAAAACCACAGTTGATCGCAGAAGTCACGGCCAGCGTGAGCATCGAGTAGAGCTGCAAGAAAACCTCTCCAATCAGAAGATACTTCTTCAAGCCCATGGCAATGCAACATCTTACTGGACAATATGTTACAGAGAGGACGGCTCAGCAGCACACACAGTCGGCATGGCATTGGTTTTTACAGCCCCAGCATCCGAACTGGACACAGGACTGTACATATGCCATGTCTCGTATCATCACCACATGGCCAAAGTCTTCCTTCGTGTGGATGTAACAAGTGAAGAGACTCAACACCTAATATTCATCACTATCTGCTTCACGACGGCTGCTGCCATCTCCATCATCTTGATCATCCTTTTGTTTGTCGTCTGCAAATGTGGGAACAGTCACTCTTCACAACAGAAAACCAGGATGGATCGTGAGTCTCTGTCCGCTCTGATGCAGGACCCTCGCTGCTCAGAGAGGGCGCTTCTTCAAGGCCAGGCCGGCCAATATGCTGAGCTCACCCACTATTCCATTGTTTTTGATGCCAAAAGCACCGTGTGATGCACCTGTTTGTTTTTCCAGGGTAACATTTAAGTTTTTAGAGTGTTTTGGAGTTCATGCCATCTTGAAGGCACACGATGTAAAAGAAAATATCATCAATTTTAGTTAAAGTGATCATGTGAATGAAGCATTTATTAGTGATGAAGAGAGGGAATTATTGGCAATGGTGATATTAGTGGTCACATGCTGTCTTTTATACATAGTGTGAAGAGCGCCTGATTGTTTAACAGCAGTTCAACAAACTGAATATTGAGCGAGCTACATTTTAGatacaatattgtttttattttgttttgtagacGAAAATAGATTCTGAGCTGAACATTTGTGCATTTGTCTGCTATACTGTCGTTTTACTTCtgaattaatgttgtttttgaatgaactatATAAGTCAGTGATTCAGTGCTTCATTTCTaaaagaatcagatgctttgaatgaatcattttaagGAATGATTTAACAAATGATTCTATAAACGGTTTGTtcaacccaaaatgaaaattctgttattaattactcaccctcatg

Function

symbol description
si:ch211-149e23.4 Predicted to be involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in adherens junction.

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0007157 heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules biological_process
GO:0005912 adherens junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-606 Predicted to be involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in adherens junction.

Ensembl:

ensembl_id ENSDARG00000097726

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016780 True 3419 mRNA 0.43 14 15173611 15218956

Neighbor

gene id symbol gene type direction distance location
XLOC_008374 CR936977.2 coding upstream 209370 14861335 ~ 14964241 (+)
XLOC_008373 diabloa coding upstream 315422 14854666 ~ 14858189 (+)
XLOC_008372 or130-1 coding upstream 320032 14826966 ~ 14853579 (+)
XLOC_008371 sars2 coding upstream 506516 14642641 ~ 14667095 (+)
XLOC_008370 FBXO46 coding upstream 573315 14592624 ~ 14600296 (+)
XLOC_008376 med29 coding downstream 13899 15232855 ~ 15237211 (+)
XLOC_008377 c2cd3 coding downstream 39802 15258758 ~ 15311768 (+)
XLOC_008378 camkk1b coding downstream 95233 15314189 ~ 15331501 (+)
XLOC_008379 NA coding downstream 128686 15347642 ~ 15351457 (+)
XLOC_008380 si:ch211-105f12.2 coding downstream 156651 15375607 ~ 15381879 (+)
XLOC_008463 BX663520.1 misc downstream 6033235 21252191 ~ 21252282 (+)
XLOC_008368 NA non-coding upstream 923682 14249389 ~ 14249929 (+)
XLOC_008363 BX927244.2 non-coding upstream 1120145 14045121 ~ 14053466 (+)
XLOC_008361 CABZ01056919.1 non-coding upstream 1215761 13957722 ~ 13957850 (+)
XLOC_008360 CABZ01009247.1 non-coding upstream 1648623 13524874 ~ 13524988 (+)
XLOC_008359 CABZ01009248.1 non-coding upstream 1664243 13421514 ~ 13509368 (+)
XLOC_008384 NA non-coding downstream 231847 15450803 ~ 15452516 (+)
XLOC_008388 NA non-coding downstream 410550 15629506 ~ 15665686 (+)
XLOC_008390 NA non-coding downstream 560032 15778988 ~ 15782552 (+)
XLOC_008393 NA non-coding downstream 768098 15987054 ~ 16018789 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000154_01383482_01395024 NA coding CI01000154 null 1382787 ~ 1395540 (-)