XLOC_008376 (med29)


Basic Information

Item Value
gene id XLOC_008376
gene name med29
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 15232855 ~ 15237211 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016781
ATCCGTTGCAGACTAGCATCTAGCGGAAGTGGACGAGTTTATTATTCATATCAGCAATGGCGTCCCAGCAGATGAGCACTAACAATGCTCAGATGAGCGCTCAGCAAGCGGCAGTTTTACAGCAAACACAAGCTCAACAACTCAGTCAACAGCAAGATTTCGACCCCGTTCACAGATTCAAGATGCTAATTCCACCGCTCAAAGACAGTCTACAGAATGTCATGACCATCGCGTCTCTAAATTTTGCACATAATACTGCTATTGACAACGGCTTAAAAACAACCGAGAAGGGTAATGATGCCGCAGTTCAGCGGTTTGACAAAAGTCTAGAGGAGTTTTatgctctctgtgatcagctggaGCTCTGCCTGCGGCTGGCCCATGAATGCCTCTCACAGAGCATCGACAGCACGAAACACTCTCCAAATCTCGTACCCACAGCCACTAAACCCGACACGGTGCAAACAGAATCTCTGTCTTACTCTCAGTATCTCAGTATGATCAAATCACAGATTTCATGTGCTAAAGACATCCATAACGCTCTCTTAGAGTGTTCAAAAAAGATCGCTGGGAAAGGTCAGGGAGCTTGTAATTAGTTGCTGCCAAATCTATTTCATTTcctctttgtgtttgtgtatgcataaCTTTGATGAtgatcaaaaaagtttttttttttttttgtatgttcacTTGTCTGTTTTATTATCATGACAATTATGCTTGTATAATTAAATTGGAAGTATTTTTGAAATCTAa
>TCONS_00016782
GCGTCCCAGCAGATGAGCACTAACAATGCTCAGATGAGCGCTCAGCAAGCGGCAGTTTTACAGCAAACACAAGCTCAACAACTCAGTCAACAGCAAGATTTCGACCCCGTTCACAGATTCAAGATGCTAATTCCACCGCTCAAAGACAGTCTACAGGTTCATTTGAATGTCATGACCATCGCGTCTCTAAATTTTGCACATAATACTGCTATTGACAACGGCTTAAAAACAACCGAGAAGGGTAATGATGCCGCAGTTCAGCGGTTTGACAAAAGTCTAGAGGAGTTTTatgctctctgtgatcagctggaGCTCTGCCTGGTAAAGATCTGCTGTTGTGTTTCTGTTGTACAATCTTGCAGATTTCAGTTTAAATCAGCACTTTTAAAAcagttcttctttttttcctttgcAGCGGCTGGCCCATGAATGCCTCTCACAGAGCATCGACAGCACGAAACACTCTCCAAATCTCGTACCCACAGCCACTAAACCCGACACGGTGCAAACAGAATCTCTGTCTTACTCTCAGTATCTCAGTATGATCAAATCACAGATTTCATGTGCTAAAGACATCCATAACGCTCTCTTAGAGTGTTCAAAAAAGATCGCTGGGAAAGGTCAGGGAGCTTGTAATTAGTTGCTGCCAAATCTATTTCATTTcctctttgtgtttgtgtatgcataaCTTTGATGAtgatcaaaaaagttttttttttttttt

Function

symbol description
med29 Predicted to enable transcription coregulator activity. Acts upstream of or within eye photoreceptor cell development. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED29 (mediator complex subunit 29).

GO:

id name namespace
GO:0042462 eye photoreceptor cell development biological_process
GO:0005634 nucleus cellular_component
GO:0016592 mediator complex cellular_component

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-021217-1 Predicted to enable transcription coregulator activity. Acts upstream of or within eye photoreceptor cell development. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED29 (mediator complex subunit 29).

Ensembl:

ensembl_id ENSDARG00000026448

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016781 False 756 mRNA 0.42 4 15232855 15237211
TCONS_00016782 True 724 mRNA 0.42 3 15232914 15237135

Neighbor

gene id symbol gene type direction distance location
XLOC_008375 si:ch211-149e23.4 coding upstream 13899 15173611 ~ 15218956 (+)
XLOC_008374 CR936977.2 coding upstream 268614 14861335 ~ 14964241 (+)
XLOC_008373 diabloa coding upstream 374666 14854666 ~ 14858189 (+)
XLOC_008372 or130-1 coding upstream 379276 14826966 ~ 14853579 (+)
XLOC_008371 sars2 coding upstream 565760 14642641 ~ 14667095 (+)
XLOC_008377 c2cd3 coding downstream 21547 15258758 ~ 15311768 (+)
XLOC_008378 camkk1b coding downstream 76978 15314189 ~ 15331501 (+)
XLOC_008379 NA coding downstream 110431 15347642 ~ 15351457 (+)
XLOC_008380 si:ch211-105f12.2 coding downstream 138396 15375607 ~ 15381879 (+)
XLOC_008381 ca4b coding downstream 153671 15390882 ~ 15401917 (+)
XLOC_008463 BX663520.1 misc downstream 6014980 21252191 ~ 21252282 (+)
XLOC_008368 NA non-coding upstream 982926 14249389 ~ 14249929 (+)
XLOC_008363 BX927244.2 non-coding upstream 1179389 14045121 ~ 14053466 (+)
XLOC_008361 CABZ01056919.1 non-coding upstream 1275005 13957722 ~ 13957850 (+)
XLOC_008360 CABZ01009247.1 non-coding upstream 1707867 13524874 ~ 13524988 (+)
XLOC_008359 CABZ01009248.1 non-coding upstream 1723487 13421514 ~ 13509368 (+)
XLOC_008384 NA non-coding downstream 213592 15450803 ~ 15452516 (+)
XLOC_008388 NA non-coding downstream 392295 15629506 ~ 15665686 (+)
XLOC_008390 NA non-coding downstream 541777 15778988 ~ 15782552 (+)
XLOC_008393 NA non-coding downstream 749843 15987054 ~ 16018789 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000154_01374595_01375245 MED29 coding CI01000154 null 1374461 ~ 1376830 (-)