XLOC_008378 (camkk1b)


Basic Information

Item Value
gene id XLOC_008378
gene name camkk1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 15314189 ~ 15331501 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016786
TCTGCTGTGACGTGCAGCTCAGCTCATTGATGAATGTTCCCGTCTTCTCACTGACTGCAGGCGGCTCATGTAAACAGGAGCAGATATAGCCACGCTGGACTAAATGTGACCGGCCGGCCCGCTAATCCTCTTTGCTTGTGTGATCCAGCGAGTCTTCAGTCCTCCAGGTTTCAAAGGGGGTTTCTGTCTGATGAACGGCCCAGCATGCAACACTGTGACTGACTATTCTGCATCCCTCTTGACTTGACCACGGCCCCTCTGAAGACACTGGACTCAGTGATGTCCACTGAGATGTGTAGTTTCTTATAATTTGCGAAGACAGACAGGAGGAAGGACAGCCATGAGTGCTGACACAGCCAGCAGACTGGATCTAGACTCTGATTATCATGCTGAACTGGCGGACATGGTGGCAGCCATGAGTGTGGCTGCCACCAGACTGACCCCACCAAACGGGTACAGGACCACACCACATCGCCTCAACCTGTCCGACCGGAAGCTTTCCCTGCAGGAGAGATCCAGCTGCCAGAATGGAGGTCCACGAATGGCCAGAAGACCTACTATTGAGTCCAAGCGTGTGTCTATTTCTGATGGAGACGATTGTGTCCAGCTAAATCAGTACAAGTTAAAGAACGAGATTGGAAAGGGTTCATATGGAGTGGTCAAGTTAGCATATAATGAAGATGATGACCAGTATTATGCTATGAAATTGGTATCCAAAAAGAGGTTAATAAAGCAGTTGGGATTCCGACGACGACCTCCTTCCCGAGAATCCAATGGATCAGTGGGATCCCAGGAGAATCTGTTAAAGCCGTCCGGCTTGCTGGACCGAGTATATCAAGAAATCGCTATTTTAAAGAAACTTGACCATCTGAATGTTGTTAAATTAGTTGAGGTTCTCGATGACCCAGCTGAGGATAACTTACATATGGTGTTTGAGTTGGTACCTAAAGGCCCAGTGATGGAGGTCCCGACAGACAGCCCTCTATCAGAAGAAATGGCCCATTTGTACTTCAGAGACATCATTCTAGGAATCGAATACTTGCACTATCAGAAAATCATACATAGAGACATCAAACCATCAAACCTCTTGCTGGGTGATGACGGGCACGTCAAGATTGCAGATTTTGGGGTCAGCAATGAGTTTGAGGGGAACGACGCACTCCTGTCGAACAGTGCAGGAACACCAGCTTTCATGGCACCTGAAACACTGACGGATCAGGACCAAAGATTCAGTGGAAAGGCTCTAGATATTTGGGCAATGGGAGTGACTCTGTTCTGTTTTGTCTTTGGAAAGTGTCCTTTTCATGACGACTACATCCTAGGCCTGCATGAGAAGATCAGGAGTATGTCAGTGGAGTTTCCAGACAAGCCTGAGATCAGTGAGCAGCTGAAGGACCTCATCACCAGAATGCTGGATAAAGTCCCTGAAACTAGAATCACGTTAGCAGAGATAAAGcttcACCCATGGGTCACGGTGGACGGCACTGATCTGCTTCCACTGGAGGAGGATCACTGCACTGTGGTGGAGGTCACCGAGGAGGAGGTGCAGAACTCTGTCAAACTAGTGCCCAGCCTGTCTGCTGTGATTCTGGTGAAATCGATGCTGCGTAAGCGCTCTTTCAGTAACCCCTTCGAGTGTCCGAGTGGCCGGCAGGGCAGATCCATGTCTGCTCCTGGAGGCCTGACTGTGGATATGTCACTGTTTCGCCCTTTAAGCAGAGGGAGTAACAGTAACAGTAACGGGAGCAGAGAAGGGGAGCTGGAAAACCTTATCGAGGATGAAATTTTTCCATGAATCAGCTCAAATCATTTTGCAGACCGACCCAGTTGTGCGATGTGACCATTTTTCACATcttcatttgattattttataatCAACATGCTTTGTTTCTACTGTACATCACAGAGTGATGTAAGGATAGACTTTGAGGTATACGTTAAAATATAAAGCTGAATCTGGTTAACAATACTTCACATTTGTGTAACAATTAAGAAATTGTTAACATCTGCATGCATTTAACAGCAAAAGGTTACGTCTCATGGAATGGAATTTTAACTTTAATCAGTATTTATATAAAAAGATTGTAAGACTGAGTATGACTGAGTAGCATGTAATGTGGCAGCAGCAACATTAGCGATAATCAAGTAACTTTTGCTTATGATGTAAGTAAGCTGTTGAGTTTTGttgttgtactgtatttttgttcATTCAATGAAAGTTCTATTTTGCACAAA
>TCONS_00016787
GACAGGAGGAAGGACAGCCATGAGTGCTGACACAGCCAGCAGACTGGATCTAGACTCTGATTATCATGCTGAACTGGCGGACATGGTGGCAGCCATGAGTGTGGCTGCCACCAGACTGACCCCACCAAACGGGTACAGGACCACACCACATCGCCTCAACCTGTCCGACCGGAAGCTTTCCCTGCAGGAGAGATCCAGCTGCCAGAATGGAGGTCCACGAATGGCCAGAAGACCTACTATTGAGTCCAAGCGTGTGTCTATTTCTGATGGAGACGATTGTGTCCAGCTAAATCAGTACAAGTTAAAGAACGAGATTGGAAAGGGTTCATATGGAGTGGTCAAGTTAGCATATAATGAAGATGATGACCAGTATTATGCTATGAAATTGGTATCCAAAAAGAGGTTAATAAAGCAGTTGGGATTCCGACGACGACCTCCTTCCCGAGAATCCAATGGATCAGTGGGATCCCAGGAGAATCTGTTAAAGCCGTCCGGCTTGCTGGACCGAGTATATCAAGAAATCGCTATTTTAAAGAAACTTGACCATCTGAATGTTGTTAAATTAGTTGAGGTTCTCGATGACCCAGCTGAGGATAACTTACATATGGTGTTTGAGTTGGTACCTAAAGGCCCAGTGATGGAGGTCCCGACAGACAGCCCTCTATCAGAAGAAATGGCCCATTTGTACTTCAGAGACATCATTCTAGGAATCGAATACTTGCACTATCAGAAAATCATACATAGAGACATCAAACCATCAAACCTCTTGCTGGGTGATGACGGGCACGTCAAGATTGCAGATTTTGGGGTCAGCAATGAGTTTGAGGGGAACGACGCACTCCTGTCGAACAGTGCAGGAACACCAGCTTTCATGGCACCTGAAACACTGACGGATCAGGACCAAAGATTCAGTGGAAAGGCTCTAGATATTTGGGCAATGGGAGTGACTCTGTTCTGTTTTGTCTTTGGAAAGTGTCCTTTTCATGACGACTACATCCTAGGCCTGCATGAGAAGATCAGGAGTATGTCAGTGGAGTTTCCAGACAAGCCTGAGATCAGTGAGCAGCTGAAGGACCTCATCACCAGAATGCTGGATAAAGTCCCTGAAACTAGAATCACGTTAGCAGAGATAAAGcttcACCCATGGGTCACGGTGGACGGCACTGATCTGCTTCCACTGGAGGAGGATCACTGCACTGTGGTGGAGGTCACCGAGGAGGAGGTGCAGAACTCTGTCAAACTAGTGCCCAGCCTGTCTGCTGTGATTCTGGTGAAATCGATGCTGCGTAAGCGCTCTTTCAGTAACCCCTTCGAGTGTCCGAGTGGCCGGCAGGGCAGATCCATGTCTGCTCCTGGAGGCCTGACTGTGTAAGCACACAACTCACGCACACATCACGACATCT

Function

symbol description
camkk1b Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human CAMKK1 (calcium/calmodulin dependent protein kinase kinase 1).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080722-13 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human CAMKK1 (calcium/calmodulin dependent protein kinase kinase 1).

Ensembl:

ensembl_id ENSDARG00000015134

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016786 False 2235 mRNA 0.46 17 15314189 15331501
TCONS_00016787 True 1403 mRNA 0.49 14 15316326 15328206

Neighbor

gene id symbol gene type direction distance location
XLOC_008377 c2cd3 coding upstream 2421 15258758 ~ 15311768 (+)
XLOC_008376 med29 coding upstream 76978 15232855 ~ 15237211 (+)
XLOC_008375 si:ch211-149e23.4 coding upstream 95233 15173611 ~ 15218956 (+)
XLOC_008374 CR936977.2 coding upstream 349948 14861335 ~ 14964241 (+)
XLOC_008373 diabloa coding upstream 456000 14854666 ~ 14858189 (+)
XLOC_008379 NA coding downstream 16141 15347642 ~ 15351457 (+)
XLOC_008380 si:ch211-105f12.2 coding downstream 44106 15375607 ~ 15381879 (+)
XLOC_008381 ca4b coding downstream 59381 15390882 ~ 15401917 (+)
XLOC_008382 dhrs11b coding downstream 72059 15403560 ~ 15408113 (+)
XLOC_008383 zgc:92630 coding downstream 84122 15415623 ~ 15437530 (+)
XLOC_008463 BX663520.1 misc downstream 5920690 21252191 ~ 21252282 (+)
XLOC_008368 NA non-coding upstream 1064260 14249389 ~ 14249929 (+)
XLOC_008363 BX927244.2 non-coding upstream 1260723 14045121 ~ 14053466 (+)
XLOC_008361 CABZ01056919.1 non-coding upstream 1356339 13957722 ~ 13957850 (+)
XLOC_008360 CABZ01009247.1 non-coding upstream 1789201 13524874 ~ 13524988 (+)
XLOC_008359 CABZ01009248.1 non-coding upstream 1804821 13421514 ~ 13509368 (+)
XLOC_008384 NA non-coding downstream 119302 15450803 ~ 15452516 (+)
XLOC_008388 NA non-coding downstream 298005 15629506 ~ 15665686 (+)
XLOC_008390 NA non-coding downstream 447487 15778988 ~ 15782552 (+)
XLOC_008393 NA non-coding downstream 655553 15987054 ~ 16018789 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location