XLOC_008388


Basic Information

Item Value
gene id XLOC_008388
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 15629506 ~ 15665686 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016799
ATCCCAGTTTCACATAtgctttgctgagtcttgttttctgtcAACTGTAAGTGAGCATTATGAAGCGGTTCCTTGTTCTGCCTTATTGTGCCAAcattaatgacaataaaaatcacgTCCTCCGGCTGCTCCCACGCTCAGAGACAACGACAACCAAGATTACATGATGGCCCACAATTATACAGCGCATCTCCAATCAAACATAAACCCTGGTCTGTGTGGATTACTCAACGTCAAGCAAACCCTCCAGCAAACAAATCTTCATCCAGCTAACGTCATACTCGAATCTGTCCAGTCTTCCCCGTATCCAGTCAGAGGTGTGTGCATCGTCTTTCTGTCTTCCCTGCAAGTCATCTGGTCTGTGCATTCGGTCTTCATGCATCCTGCTAAGGATAAGGACAATAATATCATCTCGGACTTCATTCACATAACCCTTATCCTTCTGTTGCTCCgctgttaaaataaacatttattactaCTACTCACCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016799 True 488 lncRNA 0.44 3 15629506 15665686

Neighbor

gene id symbol gene type direction distance location
XLOC_008387 traf4a coding upstream 36243 15516612 ~ 15593263 (+)
XLOC_008386 nek8 coding upstream 115493 15479442 ~ 15514013 (+)
XLOC_008385 zgc:174895 coding upstream 169373 15456536 ~ 15460133 (+)
XLOC_008384 NA coding upstream 176990 15450803 ~ 15452516 (+)
XLOC_008383 zgc:92630 coding upstream 191976 15415623 ~ 15437530 (+)
XLOC_008389 si:ch211-33e4.3 coding downstream 105732 15771418 ~ 15775182 (+)
XLOC_008390 NA coding downstream 113302 15778988 ~ 15782552 (+)
XLOC_008391 tada2a coding downstream 120474 15786160 ~ 15819598 (+)
XLOC_008392 dusp14 coding downstream 190492 15856178 ~ 15877832 (+)
XLOC_008393 NA coding downstream 321368 15987054 ~ 16018789 (+)
XLOC_008463 BX663520.1 misc downstream 5586505 21252191 ~ 21252282 (+)
XLOC_008379 NA non-coding upstream 278049 15347642 ~ 15351457 (+)
XLOC_008368 NA non-coding upstream 1379577 14249389 ~ 14249929 (+)
XLOC_008363 BX927244.2 non-coding upstream 1576040 14045121 ~ 14053466 (+)
XLOC_008361 CABZ01056919.1 non-coding upstream 1671656 13957722 ~ 13957850 (+)
XLOC_008394 BX511308.1 non-coding downstream 370183 16035869 ~ 16045504 (+)
XLOC_008398 CR847990.1 non-coding downstream 853281 16518967 ~ 16519083 (+)
XLOC_008400 BX649487.2 non-coding downstream 1164076 16829762 ~ 16829876 (+)

Expression


Co-expression Network