XLOC_008389 (si:ch211-33e4.3)



Basic Information


Item Value
gene id XLOC_008389
gene name si:ch211-33e4.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 15771418 ~ 15775182 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00016800
AAACAACATCACTTGGTGACATACAGCAACCATGGCACGTGGATCCCGAAGGGTTCCAGTTCAGTGTGAAGACATTGAGAAAATTTCAGTCGAGTGTCAGGATGACCAAATCGGTTTACATGCTGAAGTGGTTTATGATCAAGGATCTTTTCCATTACGGAGGTGCACTCCATTTGTGACTGCATCACATCATCATGGTATCCATTTGATTAATGTTTCCTCAGCTGCTGGTCAAGTTCAGATTTCATTTGCTGTGAACAGACATATCAGAGCATCTGCTGGATTCTCCACTAACACAGATGTTATGGATGCTGAAAGCCTAACATTCACAGATGGGCCCTCTACGGGTTGTAGGGCACAGGTTGAGAATGAGATAGGAAGCAACGGCCGAGAACTGATGAATGGAGATGAACGcaaaaaaaaggagaagccggTGCATCCaaaaggaaagaagaaaaaacttCGAAAGAGggcaaaaaaacaaatcaaatcccAAAAAGATGAAACCAATCTCTAACTTTGATGAAAAGTGCATTTATCACTTTTGCAACACTTTCTTGCTTTtagcatttttgctattttaatctTGAATAGTAGTACAATTGCAATGTACTGTATAGTCAAACGCTAGATAAAGTATgtttaatattacaatttttaaattgttttttatgatatttttgaTGCTAAGCCTTTATTATGAATTAGTTTTGATAAGCTTGATTAAAATTTAAACTGAACTGTTTTTatgc
>TCONS_00018765
aGAAACACAAAATCACATTGCTGCTGGTCAAGTTCAGATTTCATTTGCTGTGAACAGACATATCAGAGCATCTGCTGGATTCTCCACTAACACAGATGTTATGGATGCTGAAAGCCTAACATTCACAGATGGGCCCTCTACGGGTTGTAGGGCACAGGTTGAGAATGAGATAGGAAGCAACGGCCGAGAACTGATGAATGGAGATGAACGcaaaaaaaaggagaagccggTGCATCCaaaaggaaagaagaaaaaacttCGAAAGAGggcaaaaaaacaaatcaaatcccAAAAAGATGAAACCAATCTCTAACTTTGATGAAAAGTGCATTTATCACTTTTGCAACACTTTCTTGCTTTtagcatttttgctattttaatctTGAATAGTAGTACAATTGCAATGTACTGTATAGTCAAACGCTAGATAAAGTATgtttaatattacaatttttaaattgttttttatgatatttttgaTGCTAAGCCTTTATTATGAATTAGTTTTGATAAGCTTGATTAA

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097793

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00016800 False 752 mRNA 0.37 5 15771418 15775182
TCONS_00018765 True 523 lncRNA 0.35 3 15773878 15775157

Neighbor


gene id symbol gene type direction distance location
XLOC_008388 NA coding upstream 105732 15629506 ~ 15665686 (+)
XLOC_008387 traf4a coding upstream 178155 15516612 ~ 15593263 (+)
XLOC_008386 nek8 coding upstream 257405 15479442 ~ 15514013 (+)
XLOC_008385 zgc:174895 coding upstream 311285 15456536 ~ 15460133 (+)
XLOC_008384 NA coding upstream 318902 15450803 ~ 15452516 (+)
XLOC_008390 NA coding downstream 3806 15778988 ~ 15782552 (+)
XLOC_008391 tada2a coding downstream 10978 15786160 ~ 15819598 (+)
XLOC_008392 dusp14 coding downstream 80996 15856178 ~ 15877832 (+)
XLOC_008393 NA coding downstream 211872 15987054 ~ 16018789 (+)
XLOC_008394 BX511308.1 coding downstream 260687 16035869 ~ 16045504 (+)
XLOC_008463 BX663520.1 misc downstream 5477009 21252191 ~ 21252282 (+)
XLOC_008379 NA non-coding upstream 419961 15347642 ~ 15351457 (+)
XLOC_008368 NA non-coding upstream 1521489 14249389 ~ 14249929 (+)
XLOC_008363 BX927244.2 non-coding upstream 1717952 14045121 ~ 14053466 (+)
XLOC_008398 CR847990.1 non-coding downstream 743785 16518967 ~ 16519083 (+)
XLOC_008400 BX649487.2 non-coding downstream 1054580 16829762 ~ 16829876 (+)

Expression



Co-expression Network