XLOC_008390


Basic Information

Item Value
gene id XLOC_008390
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 15778988 ~ 15782552 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018913
CTCTAACATTCTCCGATAAAACCATCTGATGTTTGCTGGAAAGCCAATGATCACTAATTTAAAAAGCTAAGGGCATATTTCAAGcagaattgttttaattttatgcttattttatgcTATAGGGATACAGGAAAGGGATGCAGGAAATGGGCTGATATGAAAAACATTTCCTCTATTTTAGAAAGGATATCTCAGAATCACACAGTATAAAGGAACGACGCAGAGAAGACCAACATGAAGGGAATATATTCACTATGCTTGGATATAAGCTATGAAAatgagtgattttattttatttttttttttataaaaaactttGGCATCAGGATAACTAGTAAATGGGAACGGAACACTGTTCAGATCCAACTTACAGACACCGGCTTGTCAGAAAAGGTGAGAGAATATGACAAATACAGTATGACAAGATACCAACTGAAGATACAGAATATTTGATTTCCCTTATACTGTAAAACAATGTACATTCTAAAAGCTGGATTAGTGTTAGTAGAGAACACAATTCCAGTCTCGTCAAAAGTTTGTTTAATTTGCTGTGTGtacttgctgtttttttttttttttgttgttgtttgtttgtttgtttgtttgtttgtttgttttccaatTGTTTTGTGAAATCTGCATGAAACTTCTGGGCGAAAATTACATATCTTACAACAACTTTGTTgtgtttatgttatattatttatatgtgaGGGAATGACAAGTTAAAAGTCCTTACGTATCAAAGCGTCTTTACGTATCAAAGCGTCTTTACGTATCAAAGCGTCTTTACGTAGCAAAACGTTATTACGTATCAAAGTCATATCTGCTAAACTTCAGGTCTTGAGGTCACTCTCAAATCAGGTCTTCACAGAATGGATTTCGCAGGTGAAAAGGTGAAATTTAAATCTACTTGTTAgcctatatatgtttttttaagagGAATAAAACCGGCCAATTGAAAATATTTTCGTTATTTAGGGAAATGACATTTACCGTTTTGATTTGAGCGTGTGTCTTTGCATGACCTCGTTTGTCAGTTGGTCATGCATGCATGTTCGACTTATGGTAACTGCTTAGATTTTAGTTTCTGTataatgattaaaaacatgataATGATTAGGACATTTTCTTGGTTATAGTCAAGATAACAAGGCTTATTGAATGAAATATCAGTAAGTAAGAACAGTTGTGCTTCCTTTACTTTCATTTGACGCTACGAAGCCATTTTTGGCTAAACATTTTCTAGCAACCAGCTTTTAAAATGATACTGAATAATAGCCtgcaaaaaatttgcattttgagTAAACCGTTAATGAACGGCATTAGCATTATAGCATTTTTTAGATGAGAGACAGGGGTTGTGCACATTTTCAATAAAATTATGCTTATATTTTGTaagatgtatttttattattattttaataataataataataataataaaagcaataatacttttgtacatttttcttTATGAGGTTCTTCAAAACACAAAAAGGAAAAGCATGGTCTAttgtaaaaaatgacaaaaaaagatcCGGTTTATACTaagtttacttaatattttttaacagtttgaTGAATGTCGAGAAAAGATCATTTGAttcaaataaaatagttaaagCAGCAAgaaattgttttgtttctttacaGTGTAGAGGGCTTTAAATATTAAGATAAACGTCTGGctacactacaaaattttacatatcaatcaatcaatcagtgttTTAAAACCTTGTACTTTAAATTTTGACTTTGTTTTAAATTATGCTTAAATGGGTTGTTGTGTTATTTTATGTCATCTATTTGGTCGTTGATATTACAAATTTTATCAGTGGTCATGATTACCAATGTTTTGGCAAATGATTGGCTGAAACAACGTATTTTTCAATAGAAATGCAAGCAAATTCTTATAAAGAtctgattaattaaattaactcgTTTGAGCTGTGTTTTACATTGCCCACATTTTGTTATACtactattaattataatattgctAAGTCTAAGAAAACACTTCAACTCAAGGATAATGTTTTGGAGAaagaatttattaaatgtaagtaACTCAATTACACACACTGCTGTTAATGTAGGGgttctgtgttttgtgttttattacagATTTCCATTCAGTGTCAAGATGATCCTTGGGGATATAATCGTGAGATTGTATACGATACAGTTGGTTATACCACCGGCTGCACCCCAGATTTGATGGGTTATGCTAGATACCTGTCAAGGTAAGTTTTAAATATTCATTGAAAGAGATGTCTTAAAGATGATTAGTCTAGAATCACCACAGTACCGTCACGCATTGCAAACTAAGGCCACAAGCCTAACAATACTGCTGTGCAATCTAATTGCTAAATATTTGCTTTCTTATCCATTCTTTCTCTAAGAATGTATTTTTAGCAAACTTAAAACGTTTGTGTTCGCAACAGGCAAGGACTCATTCATGCAGAGAATCTGCGAAATGGTAAGATTctctttttattcctgtttatttttattatttgagctcTTAgaaatagggctgggtgattaattgaaattaattcataaatacaacCTTTGTCATGCGCATCTAGTCAGGGAAGCACAACTGGGCGATAAGCATTAAATCTCCTCCAAAGGGCAGAGGGCGCTCTCAAGTGAAACTCCAAATACCCATGAGGAAGAAACAGAAGGCATTCCCTTAGCGTTGCATTATAAACAGAAGATTGaactgctttcattgattcagTGTGACTAATAATCAAATGACTAAGGAACCATCTTACATAAGAATTTATTTCAACTACTTAATTAAAGTTATGAAGTTAGTTTGAAGTAAAAATGTTATAATCTGGGTCATTTTATGTccagcatttactacacagagcacacactctcccattcacacactacggaaaaataattttattcagtCCACCTGTAACACTTCTTTGGACCATGAGGGAGACTGGAGAACCTGGAATAAAAAtatagagagaacatgcaaactccacgcagaaatgctgCCAGGTCTAGCCGGGACTCAGAACaagtcaccttcttgctgtgaggtgacaataaCCACTTAGCAAATGTGAAGCCCCATGTGAAAATCGCCTTcttcgattaatcacccagctCTACTTAGAAATGTCATTTTAAGTGCATGTCTGTTCAGAATTCATTTGCAATAACCACACACCCTGCATAATCTGTTCCAATACAGCTCAAACACCTTGTCCAATGCTGCATGTGAGAGTTGTTGTAGAGACTCACATCCATGTTCACAAGCAGCACCCCAAAAAGAAGAGACCTGGGAGAAGAGGGAGGAATGCTGGCCATTAGAAGTCTAGTTTGGGAGTTAATTGCGTTGCGTAATCCATTGGTACTATTTAACTGGGATCCTTTGTTGTGATTAGATCAAGAAAGATGTAAAATTGAGTTTACCCTGTTGAAAAGGCTCCAAGTAATGGTCTTTACAATGGTATTATAGGCTATCATCCTTGGTTGTTCATGTTCattgtttataattaaaaatcaaataaaaagccTGAGAACTGTT
>TCONS_00016801
ATCACACAGTATAAAGGAACGACGCAGAGAAGACCAACATGAAGGGAATATATTCACTATGCTTGGATATAAGCTATGAAAatgagtgattttattttatttttttttttataaaaaactttGGCATCAGGATAACTAGTAAATGGGAACGGAACACTGTTCAGATCCAACTTACAGACACCGGCTTGTCAGAAAAGATTTCCATTCAGTGTCAAGATGATCCTTGGGGATATAATCGTGAGATTGTATACGATACAGTTGGTTATACCACCGGCTGCACCCCAGATTTGATGGGTTATGCTAGATACCTGTCAAGGCAAGGACTCATTCATGCAGAGAATCTGCGAAATGCTCAAACACCTTGTCCAATGCTGCATGTGAGAGTTGTTGTAGAGACTCACATCCATGTTCACAAGCAGCACCCCAAAAAGAAGAGACCTGGGAGAAGAGGGAGGAATGCTGGCCATTAGAAGTCTAGTTTGGGAGTTAATTGCGTTGCGTAATCCATTGGTACTATTTAACTGGGATCCTTTGTTGTGATTAGATCAAGAAAGATGTAAAATTGAGTTTACCCTGTTGAAAAGGCTCCAAGTAATGGTCTTTACAATGGTATTATAGGCTATCATCCTTGGTTGTTCATGTTCattgtttataattaaaaatcaaataaaaagccTGAGAACTGTT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0007399 nervous system development biological_process
GO:0050803 regulation of synapse structure or activity biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0034704 calcium channel complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-131121-201 No description available

Ensembl:

ensembl_id ENSDARG00000097340

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018913 False 3565 lncRNA 0.34 1 15778988 15782552
TCONS_00016801 True 687 mRNA 0.39 4 15779184 15782552

Neighbor

gene id symbol gene type direction distance location
XLOC_008389 si:ch211-33e4.3 coding upstream 3806 15771418 ~ 15775182 (+)
XLOC_008388 NA coding upstream 113302 15629506 ~ 15665686 (+)
XLOC_008387 traf4a coding upstream 185725 15516612 ~ 15593263 (+)
XLOC_008386 nek8 coding upstream 264975 15479442 ~ 15514013 (+)
XLOC_008385 zgc:174895 coding upstream 318855 15456536 ~ 15460133 (+)
XLOC_008391 tada2a coding downstream 3608 15786160 ~ 15819598 (+)
XLOC_008392 dusp14 coding downstream 73626 15856178 ~ 15877832 (+)
XLOC_008393 NA coding downstream 204502 15987054 ~ 16018789 (+)
XLOC_008394 BX511308.1 coding downstream 253317 16035869 ~ 16045504 (+)
XLOC_008395 mrm3a coding downstream 402566 16185118 ~ 16192208 (+)
XLOC_008463 BX663520.1 misc downstream 5469639 21252191 ~ 21252282 (+)
XLOC_008384 NA non-coding upstream 326472 15450803 ~ 15452516 (+)
XLOC_008379 NA non-coding upstream 427531 15347642 ~ 15351457 (+)
XLOC_008368 NA non-coding upstream 1529059 14249389 ~ 14249929 (+)
XLOC_008363 BX927244.2 non-coding upstream 1725522 14045121 ~ 14053466 (+)
XLOC_008398 CR847990.1 non-coding downstream 736415 16518967 ~ 16519083 (+)
XLOC_008400 BX649487.2 non-coding downstream 1047210 16829762 ~ 16829876 (+)
XLOC_008403 BX571762.2 non-coding downstream 1132179 16914731 ~ 16920987 (+)

Expression


Co-expression Network