XLOC_008391 (tada2a)


Basic Information

Item Value
gene id XLOC_008391
gene name tada2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 15786160 ~ 15819598 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016802
tatgtatcgcGCAGGTGCCGCTGAGGGGCGCTGTGGAAGAACGTCACTTCCCCTCCTAATGTTGTTCACTGAGCTGCACAGATCGAGCAGAAGCACTGTGTTTACATTCTCAATAATGTGTTAAACAGAGCATAAGATTATGTTTTTATTCTTTGCTTTTTAACGACGAGGCATAATCGGTACAACCGCCcagtttaattcagcacaaaTCACAGAAAGATCTCAATTTTTTTCCAAACGagtggaagaggaggaggaaggtTTTACATTTTCCAGATCCCATCATTCATTTACAACATGGATAGACTGGCGTCATTTGGAAATGATCCTTTCGATAAGCCTCCCTGTCGTGGATGTTCGTCATATCTGGTGGAGCCATACATCAAGTGTGCTGAATGTGGACCGTCCCCATTTCTCCTGTGTCTGCAGTGTTTCACTAGAGGATATGAGTATAAAAAGCACCAGAGTGACCACAAATATGAAATCATGACCTCAGATTTTCCGGTGTTAGAGAGTGGCTGGACTGCACAGGAGGAAATGGCTCTTTTAGAGGCCGTCATGGACTGTGGGTTTGGGAATTGGCAGGACGTGGCTTACCAGATGCGCTCTAAAACCAAAGAAGAATGTGAAGGTCACTACATGAAGAACTATATCAACAATCCTCTGTTCTCCTCCACTCTGCTCAGTCTCAGACATATGGATGATCATCTGTCCCGGACAGCAGACACAGCCATTCCCTTCAAGCCCACTGACGATCCTCCAAGGCCTTCCTTTGACTCACAACTGTCCAGAGATATGGCCGGATACATGCCAGCTCGAGCAGACTTCATGGAGGAGTTTGATAATTACGCTGAATGGGATTTAAAAGATATTGACTTTGTCGATGATGATTCTGATATCCTTCATGCACTGAAGGTTGCTGTAGTGGATATTTATCACTCCAGACTAAAGGAAAGACAGAGGAGAAAAAaGATCATTCGGGATCACGGCCTCATCAACCTACGCAAGTTTCTGATTCTGGAGAGGCGTTATCCCAAGGAAGTGCAGGACCTTTATGATGTCATGAGACGCTTTGCGCGTGTGGTGGGACCAATAGAGCACGACAAGTTCATCGAGAGTCACACCTTGGAGTTTGAGCTGCGGAGGGAGATCCACAGACTGCAGGAGTACAGGAGCGAGGGAATACAGTCCTTCTGCGGTGCTAAAGTCTATGAGCGAGTGAAACGCACACGAGAGGATGAGCGCAGGAAGAGGAACATGCTTTGTGACGTCCTGCAGTACATTCATGACACCCGCGCCTGCCAGCAGTGGCTGCACAAACAAGCTGCCATTGACGCTGGAATCGCGCCTGTGGTCAGCACTATCAGCACCTCAGGCAGAAGAAGTGCCCCTCCACTAAACCTCACAGGCCTGCCAGGCACAGAGAAGCTcaacgagagagagaaagagCTGTGTCAGGTGGTGCGGCTGGTGCCCGGGGCGTATCTGGAGTACAAACAAGCCCTGCTGAATGAGTGCCGGCGGCAGGGGGGACTGAGACTTGCACAGGCCCGATCGCTCATCAAGATCGACGTCAATAAGACACGCAAGATCTATGATTTCCTTATCAAAGAGGGCTACATCAATAAGGCTTAG
>TCONS_00016803
CCCTCCTAATGTTGTTCACTGAGCTGCACAGATCGAGCAGAAGCACTGTGTTTACATTCTCAATAATGTGTTAAACAGAGCATAAGATTATGTTTTTATTCTTTGCTTTTTAACGACGAGGCATAATCGGTACAACCGCCcagtttaattcagcacaaaTCACAGAAAGATCTCAATTTTTTTCCAAACGagtggaagaggaggaggaaggtTTTACATTTTCCAGATCCCATCATTCATTTACAACATGGATAGACTGGCGTCATTTGGAAATGATCCTTTCGATAAGCCTCCCTGTCGTGGATGTTCGTCATATCTGGTGGAGCCATACATCAAGTGTGCTGAATGTGGACCGTCCCCATTTCTCCTGTGTCTGCAGTGTTTCACTAGAGGATATGAGTATAAAAAGCACCAGAGTGACCACAAATATGAAATCATGACCTCAGATTTTCCGGTGTTAGAGAGTGGCTGGACTGCACAGGAGGAAATGGCTCTTTTAGAGGCCGTCATGGACTGTGGGTTTGGGAATTGGCAGGACGTGGCTTACCAGATGCGCTCTAAAACCAAAGAAGAATGTGAAGGTCACTACATGAAGAACTATATCAACAATCCTCTGTTCTCCTCCACTCTGCTCAGTCTCAGACATATGGATGATCATCTGTCCCGGACAGCAGACACAGCCATTCCCTTCAAGCCCACTGACGATCCTCCAAGGCCTTCCTTTGACTCACAACTGTCCAGAGATATGGCCGGATACATGCCAGCTCGAGCAGACTTCATGGAGGAGTTTGATAATTACGCTGAATGGGATTTAAAAGATATTGACTTTGTCGATGATGATTCTGATATCCTTCATGCACTGAAGGTTGCTGTAGTGGATATTTATCACTCCAGACTAAAGGAAAGACAGAGGAGAAAAAaGATCATTCGGGATCACGGCCTCATCAACCTACGCAAGTTTCTGATTCTGGAGAGGCGTTATCCCAAGGAAGTGCAGGACCTTTATGATGTCATGAGACGCTTTGCGCGTGTGGTGGGACCAATAGAGCACGACAAGTTCATCGAGAGTCACACCTGTGCTAAAGTCTATGAGCGAGTGAAACGCACACGAGAGGATGAGCGCAGGAAGAGGAACATGCTTTGTGACGTCCTGCAGTACATTCATGACACCCGCGCCTGCCAGCAGTGGCTGCACAAACAAGCTGCCATTGACGCTGGAATCGCGCCTGTGGTCAGCACTATCAGCACCTCAGGCAGAAGAAGTGCCCCTCCACTAAACCTCACAGGCCTGCCAGGCACAGAGAAGCTcaacgagagagagaaagagCTGTGTCAGGTGGTGCGGCTGGTGCCCGGGGCGTATCTGGAGTACAAACAAGCCCTGCTGAATGAGTGCCGGCGGCAGGGGGGACTGAGACTTGCACAGGCCCGATCGCTCATCAAGATCGACGTCAATAAGACACGCAAGATCTATGATTTCCTTATCAAAGAGGGCTACATCAATAAGGCTTAGCGCTGATTGAAGAGCTGATGAGAGATGGAGGACTGTTAGTGGACTCGTTCTGTGTTGGTTATTAATTCCTGACAGGTTTGATGTTGAAAAGACTGATTTGGTTGCCCATGAAAGACGTGTGGTGCGGAGAATCTGATTGTTGCGCAGCTCTAATATTAAaagagttgtttttttatttgtctacATGCCTTTgatgttgttgatttattttgtctgttCAATTGCGTGATGAATAtcataaagtgttttaaaaaca

Function

symbol description
tada2a Predicted to enable chromatin binding activity and transcription coactivator activity. Predicted to be involved in chromatin remodeling; positive regulation of histone acetylation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of histone acetylation. Predicted to be part of SAGA-type complex. Predicted to be active in nucleus. Orthologous to human TADA2A (transcriptional adaptor 2A).

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0035065 regulation of histone acetylation biological_process
GO:0035066 positive regulation of histone acetylation biological_process
GO:0005634 nucleus cellular_component
GO:0070461 SAGA-type complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG:

id description
ko03021 Transcription machinery
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-060929-508 Predicted to enable chromatin binding activity and transcription coactivator activity. Predicted to be involved in chromatin remodeling; positive regulation of histone acetylation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of histone acetylation. Predicted to be part of SAGA-type complex. Predicted to be active in nucleus. Orthologous to human TADA2A (transcriptional adaptor 2A).

Ensembl:

ensembl_id ENSDARG00000031562

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016802 False 1635 mRNA 0.49 15 15786160 15819342
TCONS_00016803 True 1769 mRNA 0.46 14 15786210 15819598

Neighbor

gene id symbol gene type direction distance location
XLOC_008390 NA coding upstream 3608 15778988 ~ 15782552 (+)
XLOC_008389 si:ch211-33e4.3 coding upstream 10978 15771418 ~ 15775182 (+)
XLOC_008388 NA coding upstream 120474 15629506 ~ 15665686 (+)
XLOC_008387 traf4a coding upstream 192897 15516612 ~ 15593263 (+)
XLOC_008386 nek8 coding upstream 272147 15479442 ~ 15514013 (+)
XLOC_008392 dusp14 coding downstream 36580 15856178 ~ 15877832 (+)
XLOC_008393 NA coding downstream 167456 15987054 ~ 16018789 (+)
XLOC_008394 BX511308.1 coding downstream 216271 16035869 ~ 16045504 (+)
XLOC_008395 mrm3a coding downstream 365520 16185118 ~ 16192208 (+)
XLOC_008396 p2rx8 coding downstream 523475 16343073 ~ 16371103 (+)
XLOC_008463 BX663520.1 misc downstream 5432593 21252191 ~ 21252282 (+)
XLOC_008384 NA non-coding upstream 333644 15450803 ~ 15452516 (+)
XLOC_008379 NA non-coding upstream 434703 15347642 ~ 15351457 (+)
XLOC_008368 NA non-coding upstream 1536231 14249389 ~ 14249929 (+)
XLOC_008398 CR847990.1 non-coding downstream 699369 16518967 ~ 16519083 (+)
XLOC_008400 BX649487.2 non-coding downstream 1010164 16829762 ~ 16829876 (+)
XLOC_008403 BX571762.2 non-coding downstream 1095133 16914731 ~ 16920987 (+)

Expression


Co-expression Network