XLOC_008393


Basic Information

Item Value
gene id XLOC_008393
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 15987054 ~ 16018789 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018914
ACAGGCACCTTACATAAGCATTAGGATCCATTCAGGAGACTTGAAGGATGCGGTCTCCCCACTGAGAGCGGCGGGTTTAGCTCGAGGCCAGTGAATCTGTGAGCCAGGTGTTTTTGCTCTTTCTTTGGACATGAGAGAGGCAAGTGACCCTGCCATGACCTACTTGCCGACAAATAGGCACACCTGATAAAGGTGCTGGCCAGCTGCTCAGTTCTACACTCATTAGATGCAGGCCTGCGAATGGAGCAGATTGACCCAAACTGTGCTTGGCAGTCATTTGGAAGTGTGACCCTCCTCCACCTCAGTCTGGGACACAGAGCGGAACACTTGGAAACT
>TCONS_00018915
AAGCATTAGGATCCATTCAGGAGACTTGAAGGATGCGGTCTCCCCACTGAGAGCGGCGGGTTTAGCTCGAGGCCAGTGAATCTGTGAGCCAGGTGTTTTTGCTCTTTCTTTGGACATGAGAGAGGCAAGTGACCCTGCCATGACCTACTTGCCGACAAATAGGCACACCTGATAAAGGTGCTGGCCAGCTGCTCAGTTCTACACTCATTAGATGCAGGCCTGCGAATGGAGGTCCCTAAAAGatgtaaatgcaaatgaaagtaTCTTTAGCGACTAGATCTTGATAAGAGGAGCTCATGCTGGCAGGAAGTTCAAGGCATCAGGTTCACCGCAGCTAGTGATGTGGCAGCGTGGGAAATTGGGCATGTGAAAGCGGTGACTGGAGACCGCATTTCAGGCTAGAGCGGTCACAGAGCGCAGGGGAAAAGGGAAGAGGCATAATTACTGAATACACTCCCGTCCATGGCAGGGGAGCTGAAGGAGCACGAGTGCTTTGATTAACAGTGAGGATAATTTCCTGACCTCTGTGCTAAACTGGACCAAAGAGTGACTTTGCATTCAGATTGAGGAAAGacagaaaggaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaacgagAAAGTTGGTTTCATCAATCAAGCCGTGCTCAGTCTGCGATCACGGGTGACTGATTGGTCAAGCTGTTCAAAGGAAATAGGAATTCTAAGGAGTTTACACATATTGGTTCGCTTCACTGATTGAGATGTACAACAAACCTAGCTAAACAAAAGACACTGAAGCAGTGAAAAACTCAACATCAGTCCTATCTAGCATACTCTAGAAATCTTATTCTGCTCACTTTGGAAGTGTCTTTCCACATAATCGTATCTCTGGAGCATTAATGAAGCCAAAAGGGCACCCCTGTTGTAGGACAAGCAGACAGACTCTACCACCCATTAAATAAACTAATCAGCCTGGCTACAGCAAGTCCATTTTGGTAAATAATTTGAATTACTGACCTGTTTGCTGGAGGACATTGAGCTCAGTGTACTGAGGCTGTTGGCGTCTGTCACCACCATGGCCGGGGGAAACCGAGACGAATGAGAATACTGGGGTGGCTCCTGCTTGTGTGGGTACACTGTAAAGATAACACAAACAGCAGTTTACATCTACAGCTTTATGATGTAGGCCTGACTAGATCAATAAATACTGAATAGAGGTAGTAGACTGACTGTGTGAGTGTGAGACGGAGGCCATGAAGGACTGTTGGCTCATGTGTCCAGATGACTGTTGCATGAGCTGCTGGTGTTGGCTATTTAACTGCTGAGAGAACTGCACTGGCTGCAGTGCTGCCAGACTGCCTGCAACACTGTTTATGACAGGCACCGTCTGTGCTTGCGATGTGTTCAAACCTGAATGCAAGAATATTACGACGTCAAGAGGAGAATGTATGAATAATCTGAAAAGGAAACCAAATATGGATGGACACTCACTTTGTGCAATGGCCATGACTCCAGAGAGTGGCATTATAAGGTTAGGGGTCTGTTGGTGCACATGGTGGGATGCGTGGATGTTGGTCAGGGTGCTTACTGGAGGAAGACCTCCACCTGATACCGAGATCTGTGAAGAAAATACACCACCAGTTCATCAGAATGACTAGAACGCTTCTGTCAGAATTGTACTCTTATCTTAAGAAAGTATCAGAGCCCTGACAGGAGGCACAGAGCTTTATTTGAATAGGCAGAGTTGAGAGGAGGCCATGCTCAGACAAACGTCTGACTGCTCAGATAAGCTGCTGTCATACTCCCTTCCTCCTACGCCAACTTCCAACTGGCTGTTGACAGAAACGCACCCTAGACCATGATGAATTTGACCTATAGTGTAACACTGCAGCCTTGCTAGAAAAATTAATGCACAGAAAATTGTCCTGAAACAAAAAGCTACATGAAGATCTCGCCCAACTCAAACATTAGTATTCAGATAAGCAACTCCATTGAGCGCCAGTGTCACTCAACCAACAGAGAACAAGCACAACTCCACCCTTCCTCTCCTCTGCGCGGCATTTAATCAATACAAACAGAATGTCTCTTTGTCAGGTTTGTTGGAACAGCCATGGCCGTGCCCCATTCTCACTACCACCAGCTAACATTTACTAAGATCAGCCCTGCAGTGCACTGTGGGCCAAGGCCTGCCGTCTAGCTTTGGGTTTAGCACTGGGAAGTACAATGCAGCAATTGTAAGCCCACTTGCTGGGTGAAGATATCTATCAAGCGCTACTTTGTGTTACTGTGTCAAGAGCAGACATAGTGTTATCTTATCAGTGTTGGAAGTGCTTACCATCTTGGCATCAGGTGACAGGAGGCTGTGACTGGGGTCCAGCGCCCCTGGAGAGACCTGCTGTAACACTGACTGGCTGGTTGACATGGCATTGCTGCTATGGTGATTGATCGTTGTTGAAGAACTGACTTCACCTGGACCTTGTTGGCTGTACCGGACACCTGTTGTAAAGGAAGGAAGAGAtaaattagttttagttttaatctTCTAACTGCTTTACAAAATGTGACCCAGCCAGTATTTGTTGGTCACTGACAAGTTTGGAAGAGCAAACAAACAAGGGCCTCTACATCTGGTGGCTGAACGGTCAAGGTCATCTCAATGTGTACACGTTAGCTGTCTGCAACTCTAAAAAACTATGTTGTGCTGAACTTCAGAACTTTGTTAAAATAATCTATATCAGTGCTGCACAATCCTGCTCCTGGAGGGCCCCCTTTCAGCAGAGTTTTTCTCCTGTCCCATTAGACCAagggtgttcaaactcggtcctggagggtcgatgtcctgcagattttgtctccaacttgtctcaacacacctgcaagaatgtttctagaaagcctagtaagagctcgattagctagcccaggtgtgtctgattaggttGGAACTatactttgcaggacaccggcccaccaggaccaagtttggacatccaTGCATTAAACACATTTGAACTAGAtagttttttttagaaatataagAAATTTCAAGCAAAGTGCATAGGAGCTGCATACTGCAGGAACATTCCTGATCTACATGAAATTAAGTTTTATGAGAGAATTATGTTCAACCTAAGCTGAATTCTcttttaggctatttattttgtTGGGTATTCTTGACTATTGAAGGCCACAGGAATCCAGCCTGTCTTCTATCGAATCGATGTTTGCCAACCCCACGCTCCACAGATATGAACAAGGTAAACATTTCTCAATTAAGGCTAATGTCAGACACATAGTTTCACTCCTACATTTAAATACTAGGTTTGTGCAGCCAAGCGAGATGATGACCCagccaaaataaatatttatcatttgttATGGGATTATTCCCTGAGCTTTTCTAAAAAAGCTAgtggcagcaaaaaaaaaaatgacagaaaagtcTAATCCCTCTGCTGAGTTTTGTTGTGTAGCGGAACTACAGATACAACCCCTTTGCACACTTAAAACATTGCCAGCTCTCTACAATGTCTTGTAAACGCCAGCTCAGGACAATAAAGCACTCCATTGGGCCTACAACCTGCTTGGCACACAATAGGCCAGCAACTATAAACAGTCTTTACTTTACTACCGCACAACCACTAAAAGTGTCAGGGAAAGAACAGACTATTGTCTGACTCTATCAGGCATTCACTCAGACTGCAGGGATCTCCTCTCACGTTCAATCATTCAGGTCTGTGCTGTCTGGGCCATGCTGACCAGCAGGAGGGCTCGGTTTCTGAGGAAACCAGAAACCGATGTACAACCTCTGAGAACGCGACATAAAAGTTACATGGAATGGCATCATAAACTAAGTCTTAATTACACTATTCAGTAAAGCAATGTGCACCATTCAGTGACCAATGCTAAAATTAGCGTCTTGACTAAGTATAGACAACAGTTACATATTGGCAAAAAATTTCAGCTTATCACTACTCAAAAATTTGTTTTCAGGTTTCATGATGCTTGTGGTAATCACACAATACAGTTTGACCTGTAAAAAAATGCTACCACAAAACTTGGTTAAAATGACAGAGGGTTGCGGGAAATGCTGAAGGGGAGTGGAAGCAGGAGGGTTCAACTGGTTTAAAGGGTTCAGCTCTCCCTGGGACACATGTAATATCAAAGCCTGGCTCTTCATCCCCAGGCAGTGCTCATTATAGCACTGCCGCATATGATAGGCCTCCTGGGTCTTAGCAGGACGTATGTGGCCTTTCAGCCTTTCTATTGCCCCCAACAGTCCAAAACAAGACAAGTTAAACTGTCCTGTCCTCTGCTTGTCCTTCACTATTATGTTCAGGGGtcatattgtttaattaatcattttagtttctcaaaaaatGATATAAGCTAGTTAAACAACCATTCTAACATGCCTAAACAGGATCAAAGACCATTTTGAAAGCAGTTTGCTTTCCAACAGGACGACAACACAAACATAGGGAAGACCACAACCAGCCCCCAAAACGCACATATCAGTTGACCTTCTAATGGCGGCGAACTGGCCTGTTTGTTATCAACAGGCCAAACCTGaatcaataaaaaaagttaaGTCTCTCACTGATGTGACCTGGTAACGACCTCTTTAACAAAACCCTGGTTTATGTAGTTTCCAAGAGGGGGCTGAGACAGGGAATCACCCAGTACTTTCTATACCTCGAGCAGAAGAAGAGACTCATCAGTCCTGTCTGGTCCAAAAAGAGCCAATAGTCCATCGGACAGCTCCTGCTGTTCTGCTCAGAGCACAGCCACTGCCTCTAAACCACAGCCCATAAAGGTGAGAGGGGCTTCGAGGTGTCCCTCCCCCTGGCCCAGCAGAGATAAATGAACCTTGGTTACAGTCACTACAGTCTTCTAATATGCCATAGACAAAAAGATTCCCTGCTGAGAGAAGGTAAAGAGAGCAGGGAAGAGGGGAGTCCCTTATCAAAGGACTGGGAGATGTAGTAGCAGAGGATTTTAATTGTCAATTAAGCATGCATAATACAGGCTGTGCCCTGGCAACGTGATGAGGGGTCCTGCTGTGCTATTATTTTCAGGCCAGCTTCTGACACCAAAAACAGCTGATGCTGCTGGCAGGCCACTGGCAGGACACCTTGTAAGTCCCTTGACTAAAAGCATGGAAGAGACCAACTCCATCCCGTTGCTCCCCCTTCTCAACCAAATTAACACACAACCTGAGGTCACTGACTGGTCAGGTGTGCAAAGGGAAACACCACACGCAAACAGACAAGCCACTCATTGCAGTGCTATATGCACAGAAACAAGCAACACACCCACAGAAAAAGAGCACTCTGACTCTTTAGCGCTCAGACATGAAAGAAACAGTAGGTAATAAGCTGGTCGGTCAAAGACTGTGTTGCTTTTACAGCCTAGTCTTGCCATATCAAACTAAGTCAATAAATCCTTCTGGGAATACAATTCATTAGATAACACAAGAGTGGGGCATGCAGTAAACCACAGTGACCCTACAGGTACAACTAGGCTTCGAGAGCGAGCTGAGCCACATGACCTGGGGTTGACCCTGTGTCCTGTCCAAGGGTGGCTGCTCTTTGTGTCTCACTCTTGCCTGCTGACTTCAGTGGAGCTGAGATTGCAGGTACAATGCAGATTGTTCTTGGTGTGTGTTTCAAAGCTGGGAATAACAATGCCATTTGCTCAGCTCACTCTGTCACTCTCATTGATCACTGCTCTCCTCTTTGCTTTCCCTCTGATCTCATCAACTATGTCAAGTCATCTTTAACTGGTGGAGTGATTATAATGGGGCTTGTGCTAATTATTCTTTCTAGACTAAACCGCAGAAAAGCCAAAGCTCAGTGATTTTATTTTCTGACTCAAAGCAACATTCAAAGGTTACCAGGAAGAATCAAATAACACATGTAAGCTCACAGTGAATGTATCAGTACCTTGCATCTTGCTTGGTGGGGAGCTGCTAGTTTGTGGGTGATGCGGGGAACTATGTGAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018914 False 336 lncRNA 0.52 3 15987054 16018789
TCONS_00018915 True 6052 lncRNA 0.45 3 15987069 16007301

Neighbor

gene id symbol gene type direction distance location
XLOC_008392 dusp14 coding upstream 109222 15856178 ~ 15877832 (+)
XLOC_008391 tada2a coding upstream 167456 15786160 ~ 15819598 (+)
XLOC_008390 NA coding upstream 204502 15778988 ~ 15782552 (+)
XLOC_008389 si:ch211-33e4.3 coding upstream 211872 15771418 ~ 15775182 (+)
XLOC_008388 NA coding upstream 321368 15629506 ~ 15665686 (+)
XLOC_008394 BX511308.1 coding downstream 17080 16035869 ~ 16045504 (+)
XLOC_008395 mrm3a coding downstream 166329 16185118 ~ 16192208 (+)
XLOC_008396 p2rx8 coding downstream 324284 16343073 ~ 16371103 (+)
XLOC_008397 flot2b coding downstream 368299 16387088 ~ 16407983 (+)
XLOC_008398 CR847990.1 coding downstream 500178 16518967 ~ 16519083 (+)
XLOC_008463 BX663520.1 misc downstream 5233402 21252191 ~ 21252282 (+)
XLOC_008384 NA non-coding upstream 534538 15450803 ~ 15452516 (+)
XLOC_008379 NA non-coding upstream 635597 15347642 ~ 15351457 (+)
XLOC_008368 NA non-coding upstream 1737125 14249389 ~ 14249929 (+)
XLOC_008400 BX649487.2 non-coding downstream 810973 16829762 ~ 16829876 (+)
XLOC_008403 BX571762.2 non-coding downstream 895942 16914731 ~ 16920987 (+)
XLOC_008411 dre-mir-21-2 non-coding downstream 1355000 17373789 ~ 17373915 (+)

Expression


Co-expression Network