CI01000026_10315650_10317985


Basic Information

Item Value
gene id CI01000026_10315650_10317985
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 10315079 ~ 10317990 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_10315650_10317985.mRNA
TTATATAAACTAAGTTTGAAGTACACAGAAATGAGCAGTCTGTTCTTGGACTGAATAGCGTCTTTATGCACTTATGTAATGACTGGACAGCTTGAACAGCACAGACTAGGGGGAAAAAAAGACTTATGGTTTGGGGTTGGGGTGGGGGGGTGGTCACAGGCTGATACCAGTTCAGCTAAAGATGACCTTGTGAGCAGGTGAGGTCTATATGACCCTGAAGGCACACACTACCTTATCTGTGAACTTTGCACAGGAGGGGAGTTTATGGAAAAGTGAAGAAGCAGAAAAAAAGAGACAATAAATGAGAGAATGAATGAGTGTTTGCATGAATGAGAAGGAGAGGAATGTGATATGAATAATAGCATAATAGTTGCATGTGAAAGTATTGTCTGGACTATGCTGATCTTCAAAGGGGAAGCCACTGGTTTGGGTGGTTATATGAACTTATGTTGAGTTTGTTCATCATTAGTGATGTTTGCTCTGAAGGCGGTCCAGTAATAGGAATTAAAGGGTTGTTTGAAACATCCTGGAGCAGGAGGAAAGTGTCTATATGCTGGGTTGAACTCACACAATGGACACAGTGACTGAGGCTCACCTTCACCCAAACACCTGCGTAAAAAACATGAAACCACATCCTAGAGACAGAAGACAGGGGGCCTCCAGGATTTGCGTGACAGCTGCTTGGCTACCATACTCGTGCCCTTTAGTGGCCCTCTTGAAAAACAAGATCTCTGACGGCATAATAAGATCCTTCCTTGCCATGTTGCTTGTAAATACAGTCTGCCTCTCAACGCAGTGTCCCAGACAGCGGAAAATAGGAGATCTGAAACAGGAACAGAGTTACACAAGATACACGCACACATCCATCTTGTAGCTCAA
>TU151580
ATGCATTTTGCCAGCTGAACTGCCGTCCTGTCATCAGAACTATAATCGTGTAATCACTTCCCTCTCATTTATGTCATGCTATAATGTTTAAAATGTTAAAACTCCAGAGCTATAACCAGCCTTCATTTTCTGTAAATGACAGAAATCTTGAAAAACGAACAGATAATATTGCAGCATTGAAAATAGCATTTAAGAGAGGACTAAATTTCCCAAAATAACATCACTGTCTATCTCCATCAATGATAGGGGCTACTATTTGTGTGCGGGACCCTGTCTCATGCTTTGCAGGGGGCCTCCAGGATTTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_10315650_10317985.mRNA False 879 mRNA 0.44 3 10315079 10317990
TU151580 True 306 lncRNA 0.39 1 10317380 10317685

Neighbor

gene id symbol gene type direction distance location
CI01000026_10265012_10268157 NA coding upstream 46531 10264945 ~ 10268548 (+)
CI01000026_10200749_10202405 NA coding upstream 112565 10198593 ~ 10202514 (+)
CI01000026_10136110_10149386 BRD7 coding upstream 165613 10135996 ~ 10149466 (+)
CI01000026_10124232_10124468 NA coding upstream 189244 10123916 ~ 10125835 (+)
CI01000026_09915483_09917692 NA coding upstream 397160 9915445 ~ 9917919 (+)
CI01000026_10351923_10354175 CEBPG coding downstream 33413 10351403 ~ 10356695 (+)
CI01000026_10453245_10454111 NA coding downstream 135135 10453125 ~ 10454176 (+)
CI01000026_10455059_10456945 CNEP1R1, CNEP1R1.L, TM188 coding downstream 137069 10455059 ~ 10457563 (+)
CI01000026_10458602_10465979 GPATCH1 coding downstream 140612 10458602 ~ 10466513 (+)
CI01000026_10468478_10482863 LRP3 coding downstream 150488 10468478 ~ 10482955 (+)
G133316 NA non-coding upstream 590 10314285 ~ 10314489 (+)
G133313 NA non-coding upstream 5986 10308869 ~ 10309093 (+)
G133312 NA non-coding upstream 6853 10308015 ~ 10308226 (+)
G133310 NA non-coding upstream 8472 10306390 ~ 10306607 (+)
G133303 NA non-coding upstream 15695 10299176 ~ 10299384 (+)
G133319 NA non-coding downstream 504 10318494 ~ 10318772 (+)
G133320 NA non-coding downstream 2650 10320640 ~ 10320918 (+)
G133323 NA non-coding downstream 8667 10326657 ~ 10326856 (+)
G133324 NA non-coding downstream 9878 10327868 ~ 10328095 (+)
G133326 NA non-coding downstream 14604 10332594 ~ 10332801 (+)
G133192 NA other upstream 153118 10159819 ~ 10161961 (+)
G132667 NA other upstream 745919 9568739 ~ 9569160 (+)
G131077 NA other upstream 1808292 8501408 ~ 8506787 (+)
CI01000026_08297901_08307596 CTRB1 other upstream 2015665 8297857 ~ 8307629 (+)
G130967 NA other upstream 2126006 8188374 ~ 8189073 (+)
CI01000026_11075931_11078249 MDK, MDKA other downstream 752778 11075784 ~ 11079080 (+)
CI01000026_11241496_11246081 NA other downstream 926943 11241496 ~ 11246204 (+)
G133542 NA other downstream 1158127 11476117 ~ 11477544 (+)

Expression


Co-expression Network