CI01000026_10347872_10351783 (CEBPA)


Basic Information

Item Value
gene id CI01000026_10347872_10351783
gene name CEBPA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 10347746 ~ 10351783 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_10347872_10351783.mRNA
ATGGAGAGAAAGAAGTTAGACAAGTTGTGGTACGCTCCATGCTCGCGCTGTAACAATAGAGGGAGCTCCCAGACTGCTCACGCACTGATTAGCCAACAGCGCATGCAATTGTCAAGTTGCTGTGTGCTCTTCAGCTTCTCTCGCCCTAGGAGATCTCGTGTGGCGTTTCAGCCCTTAAGCTCTCATTCACTTTACGGCCAAGTACACAGCCACGACAGGCTGCACGCTCGCCTGTCCCGAGAACTTGGAGCCAGCGCGGCTTTCTCCGGTACTGCGAGCAAGCTGGATTCCCGGAGCTCTTCACCATGTCTGGCGGGTTTTAGATACTCCATGGAGCAAGCAAACCTCTACGAGGTCGCCCCACGGCCACTGATGACCAGCCTTGTACAGAGTCAGCAAAACCCCTATATCTACAAAGACACCGCTGGAGACCTGAGCGAGATCTGCGAGAACGAGAACTCCATCGACATCAGCGCCTACATTGACCCCTCTTCCTTCAACGACGAGTTCCTGGCTGACTTGTTCCACAACAGCTCCAAGCAAGAAAAGCTCAAGCTGGCGAGCGGAGACTACGAGTACCCCCACGGCGTCAATGGCACACCGGGGGCCCCGCAGATGTACGGCTGTCTGAACAGCTACATGGATTCATCCAAACTGGAACCCATCTACGAAAGCCAGGCACGAATGAGACCCGTGGCCATCAAACAAGAGCCCCGGGAGGAAGATGAGCTCAGCCACTCGATGCCACCCACATACCACCACTCTCAACACCATGCGCCGCATCTGTCCTACCTTCAGCATCAGATCGCGCACTGCGCGCAAACCACCATGCACCTCCAGCCGGGCCATCCCACACCTCCCCCGACGCCCGTACCCAGCCCGCACCACCAACACAGCCACCTGCCGGGGGGCTCCATGAAGATGGGCGATCGAGGGAAATCCAAGAAACAGATCGACAAGAACAGCGCCGAGTATCGGCTGAGGAGGGAGCGCAACAACGTAGCCGTGCGCAAGAGCCGGGACAAGGCGAAAATGCGCAATGTGGAGACGCAACAAAAAGTCATAGAGTTGTCGGCGGATAACGAAAGACTGCGCAAGAGGGTGGAACACCTTACGCGAGAACTGGAGACGTTACGGGGCATCTTCAGGCAGCTTCCCGACGGCTCGTTTGTCAAAGCCATGGGTAACTGTGCCTAACGGAGCGAGCTGGTCTTTTGAAGTAACTTTTTTTTTTACGTCTGCTGGATAAACGCTGACACATTCTCAAAGTGTTTTTATAGGAGTCAGGCAGCTGCGGTATACATGTGCCTTTTGTACAAAAAA
>TU151953
GAAGCTCACACGCTGATGGTGTAAGTGTCATCTTAAAGGAGATCTCGTGTGGCGTTTCAGCCCTTAAGCTCTCATTCACTTTACGGCCAAGTACACAGCCACGACAGGCTGCACGCTCGCCTGTCCCGAGAACTTGGAGCCAGCGCGGCTTTCTCCGGTACTGCGAGCAAGCTGGATTCCCGGAGCTCTTCACCATGTCTGGCGGGTTTTAGATACTCCATGGAGCAAGCAAACCTCTACGAGGTCGCCCCACGGCCACTGATGACCAGCCTTGTACAGAGTCAGCAAAACCCCTATATCTACAAAGACACCGCTGGAGACCTGAGCGAGATCTGCGAGAACGAGAACTCCATCGACATCAGCGCCTACATTGACCCCTCTTCCTTCAACGACGAGTTCCTGGCTGACTTGTTCCACAACAGCTCCAAGCAAGAAAAGCTCAAGCTGGCGAGCGGAGACTACGAGTACCCCCACGGCGTCAATGGCACACCGGGGGCCCCGCAGATGTACGGCTGTCTGAACAGCTACATGGATTCATCCAAACTGGAACCCATCTACGAAAGCCAGGCACGAATGAGACCCGTGGCCATCAAACAAGAGCCCCGGGAGGAAGATGAGCTCAGCCACTCGATGCCACCCACATACCACCACTCTCAACACCATGCGCCGCATCTGTCCTACCTTCAGCATCAGATCGCGCACTGCGCGCAAACCACCATGCACCTCCAGCCGGGCCATCCCACACCTCCCCCGACGCCCGTACCC

Function

symbol description
cebpa Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within hematopoietic stem cell migration; hemopoiesis; and liver development. Predicted to be located in nucleus. Is expressed in several structures, including digestive system; hematopoietic cell; hematopoietic system; mesoderm; and yolk syncytial layer. Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to human CEBPA (CCAAT enhancer binding protein alpha).

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09055 CEBPA; CCAAT/enhancer binding protein (C/EBP), alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_10347872_10351783.mRNA False 1323 mRNA 0.55 3 10347746 10351783
TU151953 True 765 TUCP 0.57 1 10348193 10348957

Neighbor

gene id symbol gene type direction distance location
CI01000026_10234932_10250720 HEATR3 coding downstream 97026 10234932 ~ 10250720 (-)
CI01000026_10205804_10233324 PAPD5 coding downstream 113309 10205433 ~ 10234437 (-)
CI01000026_10151857_10176733 ADCY7 coding downstream 171013 10150667 ~ 10176733 (-)
CI01000026_10133129_10135047 NA coding downstream 212101 10132915 ~ 10135645 (-)
CI01000026_10035392_10061141 NKD1 coding downstream 285276 10035069 ~ 10062470 (-)
CI01000026_10421310_10440151 ABCC12 coding upstream 68376 10420159 ~ 10440927 (-)
CI01000026_10487830_10511296 SLC7A10A, SLC7A10 coding upstream 134032 10485815 ~ 10512739 (-)
CI01000026_10599580_10600367 NA coding upstream 247420 10599203 ~ 10600367 (-)
CI01000026_10658906_10667378 CELF1 coding upstream 306791 10658574 ~ 10667753 (-)
CI01000026_10695298_10696443 C1QTNF4 coding upstream 343012 10694795 ~ 10696652 (-)
G133683 NA non-coding downstream 86161 10261330 ~ 10261585 (-)
G133681 NA non-coding downstream 87389 10260145 ~ 10260357 (-)
G133669 NA non-coding downstream 96318 10251189 ~ 10251428 (-)
G133154 NA non-coding downstream 278951 10068396 ~ 10068795 (-)
G133144 NA non-coding downstream 317081 10030121 ~ 10030665 (-)
G133643 NA non-coding upstream 3038 10354821 ~ 10355463 (-)
G133646 NA non-coding upstream 3869 10355652 ~ 10357541 (-)
G133706 NA non-coding upstream 9451 10361234 ~ 10361526 (-)
G133707 NA non-coding upstream 10025 10361808 ~ 10362007 (-)
G133708 NA non-coding upstream 12014 10363797 ~ 10364007 (-)
G132721 NA other downstream 797102 9550030 ~ 9550644 (-)
G132575 NA other downstream 960030 9387151 ~ 9387716 (-)
G131742 NA other downstream 2040039 8306776 ~ 8307707 (-)
G130256 NA other downstream 4030592 6275511 ~ 6317154 (-)
G129750 NA other downstream 5528464 4785885 ~ 4820249 (-)
CI01000026_10788054_10788652 CD59 other upstream 435556 10787339 ~ 10789709 (-)
G133790 NA other upstream 482232 10834015 ~ 10859589 (-)
G133802 NA other upstream 950132 11301915 ~ 11307181 (-)
G136110 NA other upstream 4203134 14554917 ~ 14555436 (-)
CI01000026_16756776_16760261 RBPMS2A, RBPMS2B, RBPMS2 other upstream 6404946 16756729 ~ 16761341 (-)

Expression


Co-expression Network