CI01000026_11081510_11082996 (CHRM4, CHRM4A)


Basic Information

Item Value
gene id CI01000026_11081510_11082996
gene name CHRM4, CHRM4A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 11080412 ~ 11082996 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_11081510_11082996.mRNA
GCTCATTGAGCAACGTGTCCAGTGATGCCAACTTCAGTTGTGACGGCGGCAGCGCTAATGGCTCGTGTGCAGCAGTTGAGGCGGACGGCGAGAGCCCGTACAAGACAGTGGAGATGGTCTTTATCGCACTGGTTACTGGATCCCTCAGTTTTGTCACCGTTGTGGGCAACATCCTCGTCATGCTCTCAATAAAGGTTAATCGACACCTACAGACCGTCAACAACTACTTCCTTTTCAGCCTGGCCTGTGCAGATCTCATCATCGGTGCGTTCTCCATGAACCTTTACACCGTCTACATCATCAAGGGCTACTGGCCGCTCGGCCCAGTCGTGTGTGACCTGTGGCTCGCGCTGGATTATGTGGTCAGCAACGCTTCTGTCATGAACCTGCTAATCATCAGCTTTGACCGATATTTCTGTGTGACCAAACCCTTAAGTTATCCTACACGCAGAACCACCAAGATGGCCGGCCTCATGATTGCCTCTGCCTGGATCCTGTCTTTCATCCTATGGGCTCCCGCTATCCTGTTCTGGCAGTTCATCGTCGGAGAACGGACTGTAGAGCCTGGTGAATGTTATATCCAGTTCCTTTCCAACCCCGCGGTCACGTTCGGCACGGCCATTGCTGCGTTCTACCTGCCGGTGGTCATCATGACGGTGCTTTACGTGCACATCTCTCTGGCCAGCCGCAGCCGTGTGTCCAAGCAAAAGCCCGAGGCTAAGAAAGAGAAAAAAGGCCAGAAGTCTAGCGGTCTGCTCAAGAGTCACATCTTGAAGCAGAACAACAACAACCAGTCTCCTCCTAAGCCCAGCCTGGATACCTGTTCTACAGTAGACACCATGAAGAACGGCAAAGTAGACGAGTCTGTGGTATCCGCTAAAGCTGACTCGTGCGTGCAGCCGGAAAAGGAGAGCTCAAACGACTCCAGCACGGCCAGCATAGCGCCTAAAGAGCCCAAAGAGCGAGCGAACAGTGAGGTGACTTCAGACGCCGGCCTGACACCCGCGCCAACAACAGCCGCACCTAAAATCAACCCTCAATCCAAATGGTCCAAGATCAAGATTGTCACCAAACAGGCAGGAGACGAGTGCATCACAGCCATCGAGATCGTCCCACCGAACAGTACCGGCGAGAGGCGCTCCATCCCTGTGAACCGTCCCCGCACGGTGGCGCGCAAGTTCGCCAGCATCGCCCGCAGCCAGGTGAAGAGGAAAAGGCAGATGGCGGCACGAGAGAAGAAAGTGACAAAAACAATCTTCGCCATCCTGCTGGCCTTCATCATCACGTGGACGCCATACAACGTGATGGTCTTAATCAGCACATTCTGCCAGTCGTGCGTTCCAGACACAGTCTGGGCCATTGGCTACTGGCTCTGCTACGTCAACAGCACCATTAACCCCGCTTGCTATGCACTCTGTAACGCCACCTTCAAAAAGACCTTCAAAAACCTGCTCATGTGCCAGTATAAGAACATCGGCACCAGATGAACTGAGGAAAGAAGCAGCCTGCAGAGATGGAGGGTATGAAATGGAGGGTACAAAAACTGTCCCAGCTCTTCTGGCCCTGATAACTTTGAAGCTTTGGAAGGTACTGTGCAGTACATTGTGAGGCTTCATTGTCCCATGATGCTTAAACAGTGCGTTATAACTAAAAGGTAATGTATTAAGTGATGTATTAAGTGATATCAGTGTTTACAAGAAGATGATGAAGCGATGGACAATAGACTGAATCACTGAAGAAATCAAGATGAGGTCTTGAAACAAAAGGCTTTTTCAGTGATCTGATAGTTGCTGCACTGCTAAGACCACTGAACTCTGCACTACAGTAACATGAAGATCAGGCTGTGAATGACTACATTAGAGGAGCCATTGATGGCTCATTATTTCCAACAGTGAAAAGAGAGAATCCCAGCAAATATAAACCAAAAGAGACTTGGTTAATTAAGAGATCTTATTGATTCATTTATATTCCCAGTACAGCACAAATGGTATCAATCAAGTCCTTTTGGTTAGTATTAACGCTGTTTTTGACCCATACTTCTGTGCACATTTTCTGAAAACATCACACAGAGGATCACAGCTAAAGACAATAACATATGGAAAAGCTTCCTGTTCGACTGTCCCTGAAAGCATGGCGCTCCAGAGTGAGGTTCAAGTTCCTATACCTGTACCTTCCATTTTCCAAATGAAGGAAGCCACAGACTGAAGCTGTTTGCTGACCACAACAGCTGTGTAGCCCATTACATTCATAGTGACAAATTCAGGGCATGTGGTTCAGCCTGGGAGAAGTTAGTCATCATTATCCTCTTAGTGTGATCCTCTTGAGGTTCTGGTATAGGTCAGAATTCAAAAGGATCTCCTCAATGGATTGGGATAGGCATTATAGACTTTAAATGGGATGAGACACTCTATACTGAGCTGAGAAATGTCACTGTAAGGGTTTGATCTTACAGAAGTCTGTAAATATGTTTAGTTATGATGAATATATGCTCTTGAAAGTATTATTTCTTCCCTGCATTTGACGTCTGGATGTTTGTGTTCCTCTTGTATTTAGTTGGTGATCTTCATGTGATTTTACAGATTAAA

Function

symbol description
chrm4a Predicted to enable G protein-coupled acetylcholine receptor activity and G protein-coupled serotonin receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting G protein-coupled acetylcholine receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and regulation of locomotion. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite and synapse. Predicted to be integral component of plasma membrane. Orthologous to human CHRM4 (cholinergic receptor muscarinic 4).
chrm4 Predicted to enable G protein-coupled acetylcholine receptor activity and G protein-coupled serotonin receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting G protein-coupled acetylcholine receptor signaling pathway; and chemical synaptic transmission. Predicted to be located in membrane. Predicted to be active in dendrite and glutamatergic synapse. Predicted to be integral component of postsynaptic density membrane and integral component of presynaptic membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K04132 CHRM4; muscarinic acetylcholine receptor M4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_11081510_11082996.mRNA True 2585 mRNA 0.48 1 11080412 11082996

Neighbor

gene id symbol gene type direction distance location
CI01000026_11074731_11075204 NA coding downstream 5205 11074586 ~ 11075207 (-)
CI01000026_10872568_10886442 NA coding downstream 193970 10872346 ~ 10886442 (-)
CI01000026_10851071_10860344 ATG13 coding downstream 220068 10851071 ~ 10860344 (-)
CI01000026_10793317_10799991 FBXO3 coding downstream 279036 10791792 ~ 10801376 (-)
CI01000026_10788054_10788652 CD59 coding downstream 290703 10787339 ~ 10789709 (-)
CI01000026_11123998_11200321 AMBRA1A coding upstream 41002 11123998 ~ 11200321 (-)
CI01000026_11215228_11222347 SNX1B coding upstream 131891 11214887 ~ 11222347 (-)
CI01000026_11226603_11231478 SLC8B1 coding upstream 143607 11226603 ~ 11231478 (-)
CI01000026_11280159_11287703 NA coding upstream 196175 11279171 ~ 11287703 (-)
CI01000026_11308038_11346628 OTOG coding upstream 224906 11307902 ~ 11346628 (-)
G133944 NA non-coding downstream 10223 11069960 ~ 11070189 (-)
G133943 NA non-coding downstream 12110 11067826 ~ 11068302 (-)
G133924 NA non-coding downstream 102167 10977632 ~ 10978245 (-)
G133923 NA non-coding downstream 104746 10975381 ~ 10975666 (-)
G133922 NA non-coding downstream 107055 10973027 ~ 10973357 (-)
G133837 NA non-coding upstream 126849 11209845 ~ 11211577 (-)
G133981 NA non-coding upstream 154249 11237245 ~ 11240455 (-)
G133990 NA non-coding upstream 182088 11265084 ~ 11265312 (-)
G133802 NA non-coding upstream 218919 11301915 ~ 11307181 (-)
G133828 NA non-coding upstream 266316 11349312 ~ 11349588 (-)
G133790 NA other downstream 242807 10834015 ~ 10859589 (-)
CI01000026_10347872_10351783 CEBPA other downstream 731455 10347746 ~ 10351783 (-)
G132721 NA other downstream 1529768 9550030 ~ 9550644 (-)
G132575 NA other downstream 1692696 9387151 ~ 9387716 (-)
G136110 NA other upstream 3471921 14554917 ~ 14555436 (-)
CI01000026_16756776_16760261 RBPMS2A, RBPMS2B, RBPMS2 other upstream 5673733 16756729 ~ 16761341 (-)
G137667 NA other upstream 5723368 16806364 ~ 16808372 (-)
G137914 NA other upstream 5900255 16983251 ~ 16984352 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034954 chrm4a coding NC_007118.7 CM002891.2 39180876 ~ 39203799 (-)
bowfin (Amia calva) AMCG00007135 NA coding CM030123.1 CM030123.1 5106046 ~ 5107518 (+)