XLOC_008399 (galnt17)


Basic Information

Item Value
gene id XLOC_008399
gene name galnt17
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 16521785 ~ 16546472 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016810
GCAGTTCTTCAATCCCACACACGCGCGCGCATCTGCTCCTCCACTCCGCGTTTTCCAGCCGGCTCAGCAGAGGCGCTATCCAGCATTATGAGGACAAAACCATTTAACAGGGCACATTAACTGCAGAGAACTGTGTGAACGGAACGAGACGCAGGCTACTCGTAGATCAACGGCTGACGTCTGAAATAACAGCAGATCGGAAATATAGCGACTATAATGAACGGTGCGCTGGATGTGGACGAATCCGGctggagatgatgatgatgatggtgatgatgatgttgCGTCTGCGGAGACTCAGAGCTGAAGTAGAGGGATCTTACACACTTCTTCAAGCACACACGTAAAGCCTGACCTCTCGAAACATCTCACATTATTTATTTCCAGGAAGGAGCCGTGTTTGTCACTGAAGACCTCCTGAATTTGACTGACAGACGCCTTATGATGAATGACTGCAGTTTATGACCGTTTGCTGCGACTCTTTGAAGTATGTTAATATATTTCCCATGTGGGTTTCATACAGAAGAACATGTGAATACGGATGAAAGCACACAGGCGGACTCCACTATGTTCAAGAGCAGGATGCGTTTTACCAATCCGAAATGATGCGTTTCACTGGATTCCGAACACCAAAATCGTTCATGGCCTTTGTGATGAGAAGATGGAAAATATTACTGGTGCTGAATGTGTTTACGGTGGCCGGCTTTATCACTTTTTGGGGCAAGTGCAATGTACGCACCACCAAAGGTGTTGGACAACAGATGGCTGTCGATTCAAGAGGACAAACCAATCTGAATGGATCTGTTCAGGAGACCAGCATCACTCATGATGTGCTCTTAAAGAGACTGGGATCACTGGAAGATGTGGTGTACAGGCAACTTAATGGTTTGTCCAAATCTCTTGGACTCATCGAAGGTTTTGGAGGCCGGGGTAGAGGAGGTATACCAGCCACACTTACACCAGCGGAAGAAAAGGAGGCCAAATTCCTGAGGGAGAAATATGGCTATAATGCATTTCTGAGTGACAAAATCTCTCTGGATAGATCACTTCCAGACTACCGTCCCAGCAAatGCAAAAAGGCCTTTTTTCCCCGTGACCTGCCACAGATTTCCATCATTTTTATCTTCGTTAATGAGGCGTTGTCTGTTATACTGCGTTCAGTCCATTCAGCTGTCAACCACACACCAGCACATCTTCTAAAGGAGATCATCTTGGTGGATGACAACAGTGATGATGTGCAACTGAAAGGCCCACTGGAGGAGTACGTCAACAAACGCTACCCGGGTCTTATCAAAATAGTGCGCAATCAGAAGAGAGAGGGGCTCATACGGGCTCGCATCGAGGGCTGGAAAGTGGCCACTGGGGAGGTGACCGGCTTCTTTGATGCCCATGTTGAATTCACGCCTGCATGGGCTGAACCAGTTCTGTCTAGAATCAAGGAGAACCACAAGAGGATCATCTTGCCCTCCATAGATAACATCAAAGATGAGACGTTTGAACTGGAACGCTATGAGAACTCAGGCCACGGCTATAACTGGGAGCTCTGGTGTATGTATATCAGCCCACCCAAACAGTGGTGGGATGAAGGGGACACTTCTGCACCTATCAGgaCGCCTGCAATGATAGGCTGCTCTTTTGTGGTAAACCGGGAATACTTTGGGGATTTGGGCCTACTGGACGCAGGGATGGATGTGTATGGAGGCGAAAATATAGAGCTGGGAATCAGGGTTTGGTTGTGTGGGGGCAGCATGGAAGTCCTGCCTTGTTCCAGAGTGGCTCATATTGCTCGAACAAAGAAGCCCTACCACAGTAACATTGCCTTTCACACAAGACGCAATGCTCTTCGAGTTGCGGAAGTGTGGATGGACCAGTACAAATCTAATGTCTATTTGGCATGGAACCTACCGATGAAGAACCATGGCATTGACTATGGAGATGTATCGGAGAGACTTGCACTCAGGAAAAGACTCCAGTGCAAAAGCTTTGACTGGTACCTCGACAATATCTATCCAGAAATGAGAAGATACAACAACACTGTCTTTTATGGAGAAATTCGCAATACCAATGTGACCCATCTGTGTGTGGACCAGGGCATAAAGGAAAACCACACAGCAACTCTGCACCCGTGCCATGGCTGGGGCCCTCAGCTGGGTCGCTACACTAAGGAGGGTTATCTTTTCCTGGGTCCTCTGGGAAGCACTGGCGAAGATACTCGGTGTGTGGTGGACGATAAAATCAGCAGCTATCCACAGCTCCTCAACTGCGAGAAAGTCTCAAGCGTACGGCAAAAAACTTGGCACTTTGCACAGAATGAATCAATCATCAGCCGAGCTACAGGACGCTGCCTCGAGGTAGTGCCGGCTAATGTCTACTTTGGCTACGCTCTAATCCTGCGCTCATGTACTGGCCAGAAGTGGAACATCAAGAATCTGATGAAACAAGACCAAGGGCAGTGAATCAGAAAGTGGAAGCAGTTTCGAAGAACTCAAGCCGAAGGGGTACTGATCATTTTTGCGTTTGTTGAGTTTCTGTCTTACTACGTTCCATGTTACAAAAACAAGACGCACCATTTAAGATCTGGAGAAGCTCAAGACATCTTTTCAAAATTGACAGTTCCTACAAGAACATTAAAGAAGTTCCTCCAGTAAGCTCATCATATTAACAAGAATTTGGAATATTAACTGTAGGCTGAGTAGGATATTCGGGGTTTAATCGTGTGACTCTTGTGAAGTTTTGAAACCAAAATGACCATTAAACATTGTAGATGATCAGCTGTTGTATTGAAAATATACATTAATGTATCAtcgtattgttctattattattgTGCTTCTATTATTAATTTTAGTtctcaaaaaaaaatgtactgctaaatttactcaccctgaagCCATCAAAGATGTACTGTAGgtgttttattttcctttagtAGAACTTTCACCAGCATGGAACATGCCACACGTTGAGCTGGAC
>TCONS_00016811
ATGTCTTCCAAGATGCGTTTCACTGGATTCCGAACACCAAAATCGTTCATGGCCTTTGTGATGAGAAGATGGAAAATATTACTGGTGCTGAATGTGTTTACGGTGGCCGGCTTTATCACTTTTTGGGGCAAGTGCAATGTACGCACCACCAAAGGTGTTGGACAACAGATGGCTGTCGATTCAAGAGGACAAACCAATCTGAATGGATCTGTTCAGGAGACCAGCATCACTCATGATGTGCTCTTAAAGAGACTGGGATCACTGGAAGATGTGGTGTACAGGCAACTTAATGGTTTGTCCAAATCTCTTGGACTCATCGAAGGTTTTGGAGGCCGGGGTAGAGGAGGTATACCAGCCACACTTACACCAGCGGAAGAAAAGGAGGCCAAATTCCTGAGGGAGAAATATGGCTATAATGCATTTCTGAGTGACAAAATCTCTCTGGATAGATCACTTCCAGACTACCGTCCCAGCAAatGCAAAAAGGCCTTTTTTCCCCGTGACCTGCCACAGATTTCCATCATTTTTATCTTCGTTAATGAGGCGTTGTCTGTTATACTGCGTTCAGTCCATTCAGCTGTCAACCACACACCAGCACATCTTCTAAAGGAGATCATCTTGGTGGATGACAACAGTGATGATGGTGAGAAATGACAAGAGAATTGCATACTTACAATATTTTGCAAGTCTTACACCGTGTATTACAGGGTATCCGCTGAGTCTTAACatttcttaaatctcaaaatcaaaattttaggccttaaaaaagtcctaaatttactgaaatgtggGGTATaggttttaaatcttttttttaaacaggtcttaatttttctttgttcatgtatagctacccaatctggcaattaccacccatacaatcaccaacaatccatctcaataaaatttgaactttttatttaaaaagagcattTAATTACTTAGAGTAACACTTGCTTAAAAGATCTCCATTTTGTTACTGCTGAGAATACtgacctttatttttttattattaaattattattactgtagactgaagtaattgacagctatgtCTTGTTATATTATTGATAAGGGGTGTAGtgtttgtgaatggatatatttgaaaatcttttctaactggtatctttaaaaaaaatccttagcatttagcccagtataagtctaaaatttcatttataatggtcttaaaaaagtttttaatttaacttggtgaaacctgcagaaaccctggttttaATAACTcggcagaaacatttaaataccagagACATTCAAAAGTGCAGAACAGTGCACTGCACTCCCAACAAAATGGtcaggtttataatctaattgatacatattaaacctctctAACATTATTAAAAGCACATGCTGAGTGATTGATATATGTTGTATTGAGTCATTTTCaattacagtagtcaacatttgaagtggatcaaaaaatctttattttaaattagtctAAAGACAAGAATGTGTGTTgctcaatagttttaggacaactttgatgaaaggttttgatccacttcaaacatTGGCTgctgtatacagtatgtgtgctCAGTGCTTAACTTGTAAATAACTAGTTTTTTTTCCAGAACGGAAAAAAAAGTTACTGTTACCGACGTCTGCCACACAATTTCAGTTTTATGGGAACATGACGTCATTAGGCAAATATAGCACAAAAAAGCATCAAATTTAAACAgcctttaattattttgtatatttataatattaggtTAGGGGTCAACaatgggtaaaaaactaaaacaaacaaacattcattcattaatttattcattttcttttcggcttagtccctttattaatcagggatcaccatGGCGAAATGATccccaacttatccaacatatgttttacacagcggatgcccttccaactgcaacccatcactgggaaacatctatgcacatccagtcacactcatacatttTGGACAGTTGACCTTTCTCTAAGCCACACCCAACAACCACCATCTAataatcgtggcttagcaaccgtagctacgcgcaggggctctgtcaagctttcgagtggGGGAAACAGACCAGAGCgctgtgcatatggattgtgcaaatctgacacctgGTATCTGTAAATTTGAATGGGATGGTGGAATTTtatcccttttcaaaaccaaaaacccaagaggagaaatgccagcgtggatcaagctgtgcgaggggcgctaaaggagcggagataagttttttttttttgatattcctgacacattcagtgatagactgACGGCAATAattcacacacctcttaccctaaacagatctaaactgtgttgtCTACagaaatacaaagcaggttatgtttcacagctgtcttttttttgCTCGAAATTATGAgtaatgctccgtttaagccttcgcaATAGTAACGCTAGTCTTATACCGAATAGTGACATGAGTTAGTGATCCGGAAAATACGAATCAGaaaatctgttgctaactttactgaacttcatatttctaTCTATATCAAGCTACGAagatttgaaattacaaatcaacagaacaaaaccaagatacccggaggaaacccacaccaacacaaggagaacatgcaaactccatacagaaatgccaactgacccagctgaggctcgaaccagtgaccttcttgctgtaagatgatcgtgctaaccactgtgccactgcatcgccccaacaaacaaacatgtagctAAAAACATAAATTGTATGAAACATCAATATACTGTTTACTTACATCATTACAACATTCAGttcactattatgtgccaagTGAAAATAACTCAGTCcaatcttcaagaagagcccacagttagCTCTTCCATCATGTTTTCCGGCTGACGTGAGAttgctttgcttctgtctcctgctTTCCTGATCCATTCGCCCAGTTTATCTTCTCaagatctcttttgatcaggctcaATATCAAATTTACTCgtggtttaaaaaaatagtatATGCTTGACTGCctctggatttttaaaaatacaaatataatttatataggtCACTATGCCTTTATTAATTTTCGCTGCTCACAATAATCACCGACCAATGAGAGTAATCATAAACGTAAGAAGCCCATTGGTCACAATTGGTCCTACATGCTCAAAATCCACACAGCTTTGCTCGCTGTTTTACATTCGGACTCattcaaattctctctctctatctctctctctcatacacacacaaacacacacatgcaagtaTTTACCATGCAAAAGTTATGCcggatcaaataaaataaataccggagagcaaaacacaaatatctgacatttcccCGAACAGGATCCAACAAGATCCAcctcaaattaagcactgtgtgtgcaaattattttattttcacaatctGAGGTAAAATATCTACTCATGCTTTCAGTATAGCAAGAAATTTATTCTGAGGTAATCATTTTATGCTGTTGTTCAACCTCAGTGTTGCATAAATAGTTTCTAAAATTAAATTTTGGATGCTGCTGTCACAGATGGTTAAGAGGACATAGTGTAAAGAGTACGTTTATCACCTTATATTACATCGTAGCATTGTGTGCAGCTAGGACCAGGTGTTAGGGTATGTTTACATTGCAACAAATGTACTACAAACAGATGACAGCACTGTTTAAATGATccctgaaatctggactttactagaactatgttaagctgacacaatctacattgtaaaaagtgctatataaataaacatgaatcgaATTGAATTGAATCCCTGTTCAAACGGATCTGAAAAAAATGACTAAACCAAATCCATAGAAAAGCACTGCAAAATCACCCTGAACATATTTGAAACCATTAGCAGACATAGAAACAGTTTCCtagaaacattttttgtaaacCATTCTGACTGAGTCTAATCCGTTGTGTTGCATTCGGCGGGCAGTGTCAACACTGATAATCTGGAGTTGTTTGTCAAGCACCCTTTGCTCACGCTGCACATGACCACGCTTGTCTATTGTATCAAAGTGTGTGCTCAGGCCTTCCCAGAGAGACAGTTCAATTTCCATCGCATTGTTAGCATGAGCTGGTGGCAGAGGGCCAGCCGTCCATCAACGCGGAGGGAAAAGCCTGCGTTTGCTGAGATGAGGCGGCAGGCGAGCAGCACACCCAATTCTGTCCTCATAATGTCAGTGATTCACGGTTTGTCACTTGGAATGCAGATGACAGTGTTTAACGTGGGGAAAGAGATCGCTTTCCAAGAACGTGCTTTCCAGGGGGTTGATGTGGATCCCCATTGCACAGATCAAAGGCACAGGAAGAGTTTTGGCGTAGGAGACACATTCCCTCTGGTGTGGTTTAAACACAGCAACAAACACTCAAGTACCATGAAACAAGATTTCCCCCTCTTTaccatttgtgtgtgcgtgtgtgtgtgtgtgcatgtgtgtgtgtgcgtgtgcatgacAGTGCAACTGAAAGGCCCACTGGAGGAGTACGTCAACAAACGCTACCCGGGTCTTATCAAAATAGTGCGCAATCAGAAGAGAGAGGGGCTCATACGGGCTCGCATCGAGGGCTGGAAAGTGGCCACTGGGGAGGTGACCGGCTTCTTTGATGCCCATGTTGAATTCACGCCTGCATGGTGAGAATTGAGCACTTGCCACAATATGCTGCTGATCTTATAGATGGTCTCATTTTCATCTCGACTCCTCAAGACTGTTTATAACTGGTACTAACATCCATCTTGGGTGATCTAAACTGAAGTGCTTAGCTGAGACAGATATTGTAGATGTTTACAACTAGTAGTAACATGTTCAAGTTTATCCCTTGTGATTGGCTTTTAACTATAACAttttaagtgcattaatcaaGTATGTCAGTGGAAG
>TCONS_00016812
ATGATAGGCTGCTCTTTTGTGGTAAACCGGGAATACTTTGGGGATTTGGGCCTACTGGACGCAGGGATGGATGTGTATGGAGGCGAAAATATAGAGCTGGGAATCAGGGTTTGGTTGTGTGGGGGCAGCATGGAAGTCCTGCCTTGTTCCAGAGTGGCTCATATTGCTCGAACAAAGAAGCCCTACCACAGTAACATTGCCTTTCACACAAGACGCAATGCTCTTCGAGTTGCGGAAGTGTGGATGGACCAGTACAAATCTAATGTCTATTTGGCATGGAACCTACCGATGAAGAACCATGGCATTGACTATGGAGATGTATCGGAGAGACTTGCACTCAGGAAAAGACTCCAGTGCAAAAGCTTTGACTGGTACCTCGACAATATCTATCCAGAAATGAGAAGATACAACAACACTGTCTTTTATGGAGAAATTCGCAATACCAATGTGACCCATCTGTGTGTGGACCAGGGCATAAAGGAAAACCACACAGCAACTCTGCACCCGTGCCATGGCTGGGGCCCTCAGCTGGGTCGCTACACTAAGGAGGGTTATCTTTTCCTGGGTCCTCTGGGAAGCACTGGCGAAGATACTCGGTGTGTGGTGGACGATAAAATCAGCAGCTATCCACAGCTCCTCAACTGCGAGAAAGTCTCAAGCGTACGGCAAAAAACTTGGCACTTTGCACAGAATGAATCAATCATCAGCCGAGCTACAGGACGCTGCCTCGAGGTAGTGCCGGCTAATGTCTACTTTGGCTACGCTCTAATCCTGCGCTCATGTACTGGCCAGAAGTGGAACATCAAGAATCTGATGAAACAAGACCAAGGGCAGTGA

Function

symbol description
galnt17 Predicted to enable carbohydrate binding activity and hexosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in nervous system; optic cup; otic vesicle; and somite. Orthologous to human GALNT17 (polypeptide N-acetylgalactosaminyltransferase 17).

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110419-5 Predicted to enable carbohydrate binding activity and hexosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in nervous system; optic cup; otic vesicle; and somite. Orthologous to human GALNT17 (polypeptide N-acetylgalactosaminyltransferase 17).

Ensembl:

ensembl_id ENSDARG00000042418

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016810 False 2972 mRNA 0.46 12 16521785 16546472
TCONS_00016811 False 4876 mRNA 0.39 3 16525126 16533188
TCONS_00016812 True 837 mRNA 0.49 6 16538434 16545956

Neighbor

gene id symbol gene type direction distance location
XLOC_008398 CR847990.1 coding upstream 2702 16518967 ~ 16519083 (+)
XLOC_008397 flot2b coding upstream 113802 16387088 ~ 16407983 (+)
XLOC_008396 p2rx8 coding upstream 150682 16343073 ~ 16371103 (+)
XLOC_008395 mrm3a coding upstream 329577 16185118 ~ 16192208 (+)
XLOC_008394 BX511308.1 coding upstream 476281 16035869 ~ 16045504 (+)
XLOC_008400 BX649487.2 coding downstream 283290 16829762 ~ 16829876 (+)
XLOC_008401 gdpd1 coding downstream 339724 16886196 ~ 16894875 (+)
XLOC_008402 ypel2b coding downstream 351082 16897554 ~ 16914645 (+)
XLOC_008403 BX571762.2 coding downstream 368259 16914731 ~ 16920987 (+)
XLOC_008404 plin2 coding downstream 484001 17030473 ~ 17048822 (+)
XLOC_008463 BX663520.1 misc downstream 4705719 21252191 ~ 21252282 (+)
XLOC_008393 NA non-coding upstream 502996 15987054 ~ 16018789 (+)
XLOC_008390 NA non-coding upstream 739233 15778988 ~ 15782552 (+)
XLOC_008388 NA non-coding upstream 856099 15629506 ~ 15665686 (+)
XLOC_008411 dre-mir-21-2 non-coding downstream 827317 17373789 ~ 17373915 (+)
XLOC_008412 CR848791.3 non-coding downstream 829895 17376367 ~ 17378063 (+)
XLOC_008419 NA non-coding downstream 1339726 17886198 ~ 17936128 (+)

Expression


Co-expression Network