XLOC_008401 (gdpd1)


Basic Information

Item Value
gene id XLOC_008401
gene name gdpd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 16886196 ~ 16894875 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016814
ATATGTAAACTGCGCAGGGGGATGGCCTGTCAAGAAACATTGGACTGCAAGCCCATGGGATTCGCTCGGGTTTCTTCTGATCGCGGATACAGTGCGGCGGCGGCTGGCCAGCGGTGCTGGATGAAACCGGCCGGTGCGGTGACacttacttttcaatgaatttTTCATCAAACAAGTGATTTTACAGGACTTACTCGCTTGTCCGACTGAATAAAGTGAAAATGAGCGCCGTGGTTTACGTTTTATCCACGGTCACCGGATATGTGCTAACCTCGGCGTTTCTGCTGAAGTGTCCGTCTCTGCTTCACCGGCGAAAGAGAGAAGCCTTCCGGAGCAGACACATCTCTCACCGCGGCGGGGCTGGTGAGAACTTGGAGAACACAATGGCAGCCTTCAAGCAtGCTGTTAAACTAGGCACGGACATGTTGGAGCTGGACTGTCATTTGACCAAGGATGAGCAGGTGGTGGTATTGCATGACTCCAGCCTGAAGAGGTCGACTGGCATTAATGCATACGTTGCTGA
>TCONS_00016815
GTAAACTGCGCAGGGGGATGGCCTGTCAAGAAACATTGGACTGCAAGCCCATGGGGTGGGTTTTCAAAGAAATGCATGAAGGTGGAACTAAAGCAGGGTCTAATCTTACTGATACTATATGTTCTGTCTTGAAGATTCGCTCGGGTTTCTTCTGATCGCGGATACAGTGCGGCGGCGGCTGGCCAGCGGTGCTGGATGAAACCGGCCGGTGCGGTGACacttacttttcaatgaatttTTCATCAAACAAGTGATTTTACAGGACTTACTCGCTTGTCCGACTGAATAAAGTGAAAATGAGCGCCGTGGTTTACGTTTTATCCACGGTCACCGGATATGTGCTAACCTCGGCGTTTCTGCTGAAGTGTCCGTCTCTGCTTCACCGGCGAAAGAGAGAAGCCTTCCGGAGCAGACACATCTCTCACCGCGGCGGGGCTGGTGAGAACTTGGAGAACACAATGGCAGCCTTCAAGCAtGCTGTTAAACTAGGCACGGACATGTTGGAGCTGGACTGTCATTTGACCAAGGATGAGCAGGTGGTGGTATTGCATGACTCCAGCCTGAAGAGGTCGACTGGCATTAATGCATACGTTGCTGATGTGGCTTATGCTGATCTTCCTCCTTACCTCTGTAAGCTTGGGGTCAGTTTCAAACGAGACTGCTACTGTGAAGGAGGAGAAGACAAACGCATCCCCCTGCTGAGAGACGTGTTCGAAGCTTTCCCAAGCACCCCGGTAAACATCGACATCAAGGTCAACAATGACACCCTCATCAAGAAGgtgTCTGAGCTGGTCATTCAGTATAAAAGGCAGGATCTGACCGTCTGGGGAAACTCCAGCAATGAAATTGTTAAGAAATGTCACAAAGAGAATCCACAAATCCCAATCTTGTTCAGTTTGCCTAGGGTGCTTCTGTTACTAGGTCTATTCTACACTGGCCTTCTGCCCTTCGTCCCAATAAAAGAACAATTCCTGGAGATTCCCATGCCTTCAATTGTTTCCAAGCTCAAAGATCCTCAGCGCCAGACACGGAGTCAGCGCTTCATAACATGGTTGGCTGACAAGGTCCTCATGAGGAAATCTCTGTTCGATCATCTGACAGGCAGAGGAATACAGGTGTACATCTGGGTGTTGAACGACGAGGAGGACTTTCAACGTGCCTTTGACCTTGGAGCTACAGGAGTTATGACAGACTATCCCACCAAGCTAAAGGAGTTTATGGAGAAAAACAACTACACTACCACCATTAAATAGGACTTGCTGGCCAAAGTAAATGATCAATATGGTTTTCCATTGATCTTTGGCCTCTAAATGGGTCTTTTAATTACCCCAAAGTCTGTGATGTTTATGTCTGTGCGTGTAGAAGTGGCTGCTATCAGTTCTGGATTCAACGAAGCCTTCTCAAAGCCAATCATATGTCATGAATCCTTCTAAAGCAATACATGTTATCAATAAGAGACTGAAGATTAATTATCAAATATGTTGAAGTGACGTCATGATTATCATGACATTTCTGTGAGGTTTACTCTACTTCAGGCAccttcattgttttattaaaatgtagttTAGTTTCATTACATTGTAAGGATGTAAATCCTGCTggtatattgttgttgttgttttcatcagTTTCCACAATAACACTGAACTCACTGAAGAAATACTGTCTAAATGGCAAGACCGAAGCTACTGACGTTTTTTTCCAAGGCACTGAGAGTAAAGACTGGTATCAAGGGTTACTTTTGGGATTGTTGAGGGACCAATATTAAGAGTGCATtaggtatttaaatgtttactgCAGTACTTTGGTGTTTGATTGACATGTAATTTGTACAGTAAGAGATTACAGGGTTATGTGATATTTTATCTGTGACCAGTCAGAAATTTTGACACACCAACTCAGTCttcgttatttttattttttacttgtgaCAATGTTAACGTGATCAAAGTATCTAAAACTGCAGTCAAAACATTTTATACAAgcaaaaaacttgtatctgtgctACTTAAAAATCTTTTAATATCCACTCCAACGTGGCCATACATACTAatacaataatttaaattataacaaTGCATACAAAAACCAATTTCAAGTATTCACAGAGTAGACTTTAGCATAGAAGGGTTTCTGATCACGAAAAAAATAAAGTCGTTCTAGTGTGTCCAAGCTTTTGACTGgttgtgtttgttttacttttttgaaaGAAGTTTGTGTGTAATTGGTTCATAAACAAGTGTTACTTTTTCCAGGATAggtaaagatttaaaatgttgGTCCTTCTACAGTTTTGCTGTATTGCAATGGTGTGGAAATGTTTTGTTTCCCTCTTTTAAGGAACGTCTGTGAAAAGCAAAACCCATTTAGAATCGACATGATAGTAACGCACATCTGAATGGAGATTATCTGAGAACTTGGCATAGCTGAGTATTTGTGGAGTTCAATGCTTTCCCCTTTTTGTGTGGTGTTCATGGGTGTAGTAACTCCTGGATTTGTGTTGTGTTCAGTTTTCTGATTCGCATTTGCTCCAAGCCACTTTCATTGGTTGTGTATATTTAGTGCACTGTTTAATTTAcgataataatattgtaattaaaaaaataggtTATTATAAATGGTATTTGGATTTGTAAATATCTggtcaataaatatgttttataaa

Function

symbol description
gdpd1 Predicted to enable lysophospholipase activity and phosphoric diester hydrolase activity. Predicted to be involved in N-acylethanolamine metabolic process and glycerophospholipid catabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human GDPD1 (glycerophosphodiester phosphodiesterase domain containing 1).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006644 phospholipid metabolic process biological_process
GO:0070291 N-acylethanolamine metabolic process biological_process
GO:0046475 glycerophospholipid catabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004622 lysophospholipase activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040822-22 Predicted to enable lysophospholipase activity and phosphoric diester hydrolase activity. Predicted to be involved in N-acylethanolamine metabolic process and glycerophospholipid catabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human GDPD1 (glycerophosphodiester phosphodiesterase domain containing 1).

Ensembl:

ensembl_id ENSDARG00000017261

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016814 False 523 mRNA 0.52 4 16886196 16888072
TCONS_00016815 True 2665 mRNA 0.41 10 16886200 16894875

Neighbor

gene id symbol gene type direction distance location
XLOC_008400 BX649487.2 coding upstream 56320 16829762 ~ 16829876 (+)
XLOC_008399 galnt17 coding upstream 339724 16521785 ~ 16546472 (+)
XLOC_008398 CR847990.1 coding upstream 367113 16518967 ~ 16519083 (+)
XLOC_008397 flot2b coding upstream 478213 16387088 ~ 16407983 (+)
XLOC_008396 p2rx8 coding upstream 515093 16343073 ~ 16371103 (+)
XLOC_008402 ypel2b coding downstream 2679 16897554 ~ 16914645 (+)
XLOC_008403 BX571762.2 coding downstream 19856 16914731 ~ 16920987 (+)
XLOC_008404 plin2 coding downstream 135598 17030473 ~ 17048822 (+)
XLOC_008405 clptm1 coding downstream 179310 17074185 ~ 17095655 (+)
XLOC_008406 relb coding downstream 205537 17100412 ~ 17125217 (+)
XLOC_008463 BX663520.1 misc downstream 4357316 21252191 ~ 21252282 (+)
XLOC_008394 BX511308.1 non-coding upstream 840692 16035869 ~ 16045504 (+)
XLOC_008393 NA non-coding upstream 867407 15987054 ~ 16018789 (+)
XLOC_008390 NA non-coding upstream 1103644 15778988 ~ 15782552 (+)
XLOC_008411 dre-mir-21-2 non-coding downstream 478914 17373789 ~ 17373915 (+)
XLOC_008412 CR848791.3 non-coding downstream 481492 17376367 ~ 17378063 (+)
XLOC_008419 NA non-coding downstream 991323 17886198 ~ 17936128 (+)
XLOC_008420 CR385077.2 non-coding downstream 1191827 18086702 ~ 18086816 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_02241056_02246083 GDPD1 coding CI01000053 null 2240563 ~ 2246301 (-)