CI01000026_12425699_12438163


Basic Information

Item Value
gene id CI01000026_12425699_12438163
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12424079 ~ 12438621 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_12425699_12438163.mRNA
ATATATATAGCCTGCAGGGGGCGTGTCATGGCTCAAATACACTAATTAGTCTCGGCTCGTACGACATTTTCCACATAAATAAACTACAAAAAAACGTAAATAATTTTAGACTTACATTTTTTTTTAAATGTGACAAGCTTAAAAATACATTCATAAAATGTGGCATTATTCGCCATGACCACGCAACGCCGCCATCTGTCCGTCTCGGTCCGCTTGCGACTACCGTTTTCGATCATGTGATCAGCAGCAGCTAGCGGAAGCCGCGGGAGCCTCTAGGTTCCGCCGTGTTTCTGTGGGGCTGCAGCGTCTTCAATGTGGATCACTACATGGCGGTAACGCGGAGCACTGCGGTAATGATGATTACCTAACGCGTTTTCTTCAGTATAAAAATAGTTTTAACATTTTCATGGTTATAGTTAGTACAGGTGAAATTAGTCGCAATAAGCCACATACTGTTTTAATATATCTTCAGTCGTGTATACACGAGGCCTGCATGAAAGCTCGTTAGCCTAGGCTAGGCTAGCAGCATATTGCTATGGCGCTTATTTCTGAATTCGGTAGTATTTACCATATATTGCGAAGCGGTTACAATTTGTTTGAGACGCATATAGATGAATCCTGCATCGCTTTACTAAATCTCTGTATTTAAAAGCTGTAAGTCAACTAGCATATTTGCTGCTGTAATGTCCCAGCACAAGCGCGCCACTGCCGTGTCTTTAACCCCCTCTTTGTTGATACATAGCCGGTCTGACGGTTCTAAAACTGTCAGTTCATTTTAATGATCGTTGTGTGTTTAAGTTAAGCCAAGAATGACAGAAAGACTCTTAACAAAACCAATGCAAATGAAGGTTCCTATGCGTGGTCCAATTTTGTAGTATTTCTTATAAGATACTATTAAATACTATTGGCTCGTGAATTAGGTTTATGATTGATTCTTACCAGTTTGCATCTTGCAGAAGAAATGATCTAGTAGTAAGTTGTATTGAACATTAAGAAAGTGCATGTTTCTGTCAGGAAAGACAATTTGTACTGTATTATAATAACTAGCAGTTTTTTAAAGGGATAGTTCCCCCCCAAAATTAAAAAAAAACCTGTCACTGATATTTTTTTTAATGTTGCTACTAACTGTTTCACAGACTTTCTCCTTTGGAACACAAAATTAGATTAATAAATGGTGACTGAGGCTGTCATTCTGCCTTAACCTTTTGTGTTCCATGGAAGAAAGTAAGTCATCTATCCCTTTAATAGCTTCTTCTCATTGCATTTGAGTGATTTTAAATTATTATGCTATATGCGTTTTCATGAACCACAGATCATTGTAAAATTGTGAGTGCTTTGCCAGCAACTCTACACGGGCTTCCCGATCCTGGTTGGCACAGTAAGGTTCGCCTCATAGGTAAGCTGCAGAATCTGTCCTTTGCCTAATTGTATAACTTGCATACATTGTGTTTTGATTTTCTTTATTTCTTTGTCTGTTCTAAGATTGAAGAAGTCATAAGTTAACATATGCAGATGCTAAGTAGACTCAATATCTAGTCTTGCAGTAAGTTACTGTTTGAAAATGTGCTTTTTCATTCCATGTCCTCCGGATTGCTTTCTCAGTGAGGCAAAGGTCTGATAATGGAGAATGGACAAGGCACAGGTGCAAAGCTTGGATTACCACCTCTTACTCCAGAGCAGCAGGAGGCGCTACAGAAGGCTAAGAAGTATGCAATGGAACAGAGCATCAAGAGTGTTTTAGTGAAACAGACCATCGCCCACCAGCAGCAGCAGCTCACAAACTTACAGGTGGCAGCACAAAGGCAGCGAGCTCTGGCCATCATGTGTCGTGTGTATGTGGGCTCCATTTATTATGAGCTGGGGGAGGATACCATCCGGCAGGCCTTCGCCCCCTTTGGTCCCATTAAGAGCATCGATATGTCCTGGGACTCTGTCACCATGAAACACAAGGGTTTTGCCTTTGTGGAGTATGAAGTTCCTGAAGCAGCTCAGCTGGCTTTGGAGCAGATGAACTCAGTCATGCTGGGTGGGAGGAACATTAAGGTGGGGCGGCCAAGTAACATTGGACAGGCGCAGCCCATCATCGACCAACTGGCAGAGGAGGCACGTGCCTACAACCGAATCTATGTAGCCTCTATCCACCCTGATCTATCTGACGAGGACATCAAGAGCGTCTTTGAGGCCTTCGGAAAAATTAAAAGTTGCATGCTGGCACGGGAACCCACCACGGGAAAGCACAAGGGCTACGGATTTATTGAATATGAAAAGCCTCAGTCAGCGCTGGATGCCGTCTCGTCTATGAACCTGTTTGACCTTGGAGGTCAGTACCTAAGAGTGGGAAAGGCTGTTACCCCTCCCATGCCTCTCTTGACACCTATGACCCCAGGAGGTCTGCCCCCTGCCGCAGCTGTGGCGGCTGCTGCTGCCACCGCCAAGATCACTGCCCAGGAGGCTGTTGCTGGAGCGACAGTGCTGGGCTCTCTTGCTTCACCAGCACACATTCTCAGTCAGCAAATGGGACTTCCACAGGCAGTACTGGCTGCCCAGGCCCCTGGCATCATCACAGGTCTGCAAAAATCAATGAACAGTGATCTTTGACTACTTTTATTGGTCTAACACAGTTTGAATTGAATTCTTAACCCCCCTGATGGCCTGTTCACACCTAGATGAATGTTTAGTGCAATAAACACTTTATTATGTTCAGACCAACGCTTGCATGTCGCCAATGCAACATTTTGTGATTTTGAGTGTGCTAATCTCTTTTCCATTGCACTGAGAATAATGCTGGCTAACCAATAATATTCCTGCTTGTAGTCGCATGCCCAAGAGCTGCTGTTGCTGTTACATAAAACTACTACTTGGTGGCACTCAAGAACAGAGTATTTGGCTAAGTGACAGTAAGTAGCAGAGGAAGAACCCAGAACCATCTTTCTTGTCTCTGTACACTTGTATTTGGTGTTGTTTAACACCATAGAAGAATTTGCACAGCGCTTTTAAAAGTGCCACCTACTGTCTGTGTGAATTGGCATTTTCATTCAGCCCATCTGCCCCCCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_12425699_12438163.mRNA True 3056 mRNA 0.44 7 12424079 12438621

Neighbor

gene id symbol gene type direction distance location
CI01000026_12203244_12209526 SHH, SHHA coding upstream 214381 12201358 ~ 12209698 (+)
CI01000026_12192269_12200366 NA coding upstream 223345 12191652 ~ 12200734 (+)
CI01000026_12094316_12125431 NA coding upstream 297815 12094316 ~ 12126264 (+)
CI01000026_12074163_12076475 MNX1 coding upstream 346539 12073813 ~ 12077540 (+)
CI01000026_11862091_11976290 PTPRN2 coding upstream 447789 11862091 ~ 11976290 (+)
CI01000026_12486292_12534245 SCRIB coding downstream 47265 12485886 ~ 12534327 (+)
CI01000026_12551009_12554565 NA coding downstream 112388 12551009 ~ 12554565 (+)
CI01000026_12558237_12560933 RGS9BP coding downstream 119616 12558237 ~ 12561618 (+)
CI01000026_12562467_12570436 DPH2 coding downstream 123846 12562467 ~ 12570774 (+)
CI01000026_12582462_12589223 GAREM, GAREM1 coding downstream 143683 12582304 ~ 12589557 (+)
G134282 NA non-coding upstream 14343 12409380 ~ 12409736 (+)
G134271 NA non-coding upstream 27789 12395063 ~ 12396290 (+)
G134262 NA non-coding upstream 45386 12378426 ~ 12378693 (+)
G134258 NA non-coding upstream 48412 12375434 ~ 12375667 (+)
G134256 NA non-coding upstream 49841 12373578 ~ 12374238 (+)
G134329 NA non-coding downstream 13295 12451916 ~ 12456462 (+)
G134314 NA non-coding downstream 18008 12456629 ~ 12481470 (+)
G134345 NA non-coding downstream 64641 12503262 ~ 12604181 (+)
G134306 NA non-coding downstream 157175 12595796 ~ 12597699 (+)
G133542 NA other upstream 947172 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 1169006 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 1344999 11075784 ~ 11079080 (+)
G133192 NA other upstream 2262118 10159819 ~ 10161961 (+)
G132667 NA other upstream 2854919 9568739 ~ 9569160 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00019051 LOC106568618 coding CM030124.1 CM030124.1 1745722 ~ 1758318 (+)