XLOC_008403 (BX571762.2)


Basic Information

Item Value
gene id XLOC_008403
gene name BX571762.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 16914731 ~ 16920987 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016818
GGTGTACAGACATACGTGTGTAAAAACAACAGTATACCGCATGTCATGCTCATCTCAGCCAGACTGTTTATACTACAAGCGGCTCTATTCATATGCGTACATGACATAAGGCAGGGCTCAGAGGGAATGTGGTGCTTGGCAGGATCAGGGTCACGAGTTCTCCGAGCTGATGGGGCTTTCTCCACTTTATGTCAGTGAGAAACTACCAGGCTGACCTCTGCCAATTCAGCTGAGGTTAGCACCATCTGCGCCCGTGAGGAGGCCTGGCATGAAGAGATCTCTGAATGGAGCTCTGACAGACCAATAtcattcgttcatcaaaTAAAAGACAGAAGCCAGTCATATGCGTTTAGAGATgcaaaaagatttgatccgtttaTCTTTCGAGTCCTCGAGTTTAAATCATCGCACTTTACATGAAGTCACAAAAGTCCCTTCACACTTGCTAAATGATTTGACCACTTGATTTGGACTGACAGTCTGAGTAGGGCTTTAGGTAACAGTTCCTGTGTGAGCATTCATTCTTTCATCCCTACACTGTTGACTGTTTTGATAGTGAAATTTGGCTGAAATAATGCTAATGTGCACCTTCAGAGGCTTAAAGTGAAGTTAACCATCAAGCTTTTCACATGAAGCAACCATCTAACTGATTTTGGATGAAACATACGCATAGTTGAATATGTGAATGTAAAGCTTTGTGTATAACCGTTTACAAGGTGTTGTATCTGGACATCTTTGTGTCTGTGTTCCATGTTCCAACAGTTTGTGCTGATCCCAGTCGCACTGTGTTCATTTGTACTGACTGTTCTTGCTCGTTAGCGGACTCTTGGGGGAATAAGTACATAAGATGAGACTGTACACTGCCTATCTGTTAGGTTCTTTAAA

Function

GO:

id name namespace
GO:0042737 drug catabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0009074 aromatic amino acid family catabolic process biological_process
GO:0043101 purine-containing compound salvage biological_process
GO:0017144 drug metabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process biological_process
GO:1902222 erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process biological_process
GO:0006558 L-phenylalanine metabolic process biological_process
GO:0006559 L-phenylalanine catabolic process biological_process
GO:0006570 tyrosine metabolic process biological_process
GO:0006572 tyrosine catabolic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097962

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016818 True 885 lncRNA 0.43 3 16914731 16920987

Neighbor

gene id symbol gene type direction distance location
XLOC_008402 ypel2b coding upstream 86 16897554 ~ 16914645 (+)
XLOC_008401 gdpd1 coding upstream 19856 16886196 ~ 16894875 (+)
XLOC_008400 BX649487.2 coding upstream 84855 16829762 ~ 16829876 (+)
XLOC_008399 galnt17 coding upstream 368259 16521785 ~ 16546472 (+)
XLOC_008398 CR847990.1 coding upstream 395648 16518967 ~ 16519083 (+)
XLOC_008404 plin2 coding downstream 109486 17030473 ~ 17048822 (+)
XLOC_008405 clptm1 coding downstream 153198 17074185 ~ 17095655 (+)
XLOC_008406 relb coding downstream 179425 17100412 ~ 17125217 (+)
XLOC_008407 si:ch73-223p23.2 coding downstream 330204 17251191 ~ 17255307 (+)
XLOC_008408 dhx40 coding downstream 337259 17258246 ~ 17285188 (+)
XLOC_008463 BX663520.1 misc downstream 4331204 21252191 ~ 21252282 (+)
XLOC_008394 BX511308.1 non-coding upstream 869227 16035869 ~ 16045504 (+)
XLOC_008393 NA non-coding upstream 895942 15987054 ~ 16018789 (+)
XLOC_008390 NA non-coding upstream 1132179 15778988 ~ 15782552 (+)
XLOC_008411 dre-mir-21-2 non-coding downstream 452802 17373789 ~ 17373915 (+)
XLOC_008412 CR848791.3 non-coding downstream 455380 17376367 ~ 17378063 (+)
XLOC_008419 NA non-coding downstream 965211 17886198 ~ 17936128 (+)
XLOC_008420 CR385077.2 non-coding downstream 1165715 18086702 ~ 18086816 (+)
XLOC_008422 NA non-coding downstream 1464603 18385590 ~ 18401208 (+)

Expression


Co-expression Network