CI01000026_12562467_12570436 (DPH2)


Basic Information

Item Value
gene id CI01000026_12562467_12570436
gene name DPH2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12562467 ~ 12570774 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_12562467_12570436.mRNA
GAACTTAATAAGTTTTGTTCAATGTTAGAAGACGAATACAGAGGAGAAAAGCAAGATCATGCGGTCAAAGCAGGCTTCCGCAGAATGTGTTCTCCACAAAGCAGACATCTGATCTCTGTGATCAGAAGTGGATTTAGCAGGTCTGTCTCGGGGTCTCTTCTGCTGTTGAGAGGTTCATGCACGTTGGTCAGAGAGTTGAGCACCTCTGTCAGAACTCTACAGTATGACCTGAAAAAATCAGACATTTCTAAGTCTGGCAGTAGAAAGTTATTCTTTGACACTCATGCAATGGTCCAACTGCTTGAGGAAAGCGGTTTCATGACCCAGCAGGCAGAGGTCATTGTCAATATGATGGTGAACATCACAAATTCAAACATGGACGTTATGTACTGTGACATGGCTACCAAGACACAGCAGGAAATCATGTTACAGAAAGTCATGTCTCATATCACTGCCGTGAAAAAGGACATGATCATTCTTGAGAAGAGTGAATTCTCTGCATTATTGGCAGAGAATGAGAAAATCAAGGTTGAGCTTTCACAGCTAAAGTTACAACTCACTGATGTGATAAACAAAAGGCGCGCAGATGCCATGTTGGATTTGAACATAGAGAAAAGCCGTGTGAAGGAGATGACGGCAGACTTTGACAGAAAACTTATTGGGACCAGTAATGAATTGATGGAAATGCATTCTGAGCAGGATCGGCATATGACACAGACCAACATGAAAATAGACACAGAAGTAGCTGGCCTGAAGACTATGCTGGAGGCGCATAAACTAGATACTATCAAATATCTTGCAGAGGTCAATGTGAAAGTTGTCACCGTCACTGACATCTCTCCAGTAGCCTTGCAGTTTCCAGATGAACTCCTTCCTGATGCCGTCCGGGTCTCTACCGAAATAGAGAATGAAACCAAAGCAAAGACATTCATTTTAGGTGATACATCCTATGGCAGCTGTTGTGTGGATGAGGTAGCAGCAGAACATGTAAGAGCAGACTGTATAGTGCATTATGGGCCATCTTGTCTCAGCCCATGCAGACGACTACCTCTTCTGCATGTGTTTGGGAAAAGACCTATAGATGTCCAGCAGTGTGCTGCAGCCTTTAAAGAGCTTTACCCTGACTGCCAAAGTCATGTCATCATACTGTATGATGTCACCTATTCACATGCTATAGGTGACCTCAGGACGCTTTTGTGTGATATGTACCCCAATGTTGCAGTATCTCTTCTAAAAACGGATCATTCCTGCGGTGCTGAACTGATACAGGAAAGCTGTGTGGACAGTGATCACTTGGATTCACAGGATGATAGAGTCATTTTTAAATTTGGCAGACAGTTTAGTGTAAAAAAGGGGCAGAGTATTGATGATTACAGTATGTTTTACATTGGCCACGAAGGCTTGACTTTGACAAACTTCATGATGACCTGGAACCATTGTGCCTTCAGCTCATTCAATCCAGAAACGTGCACAGGGCGTGTGGAATCGGTTAAAATCAACAAAGCACTGATGAAACGATATTATGCTATTGAGCGGGCTAAAGATGCCAGTGTGGTCGGCATTTTGGTGGGCACCTTGGGTGTCGCCAATTACCTGACCATCATAGAGCAGCTGAAAGACATTATTCACAAAGCAGGCAAGAAGAGTTATATGTTTGCAATGGGAAAGATCAATGTTCCCAAGCTTGCCAACTTCTTGGAAATTGATGTTTATGTGCTAGTTGCCTGTCCAGAGAACTCACTGCTGGATTCAAGTGAATTCTACAGACCTGTGGTGACTCCCTTTGAGATGGAGTTGGCTTGCAATAAGCAAAGAGAGTGGACTGGAGAATATGTCACAGACTTCAGAGATTTACTGCCTGGAGCTCTGCGAGCCTGTTCCACCTCCTCATCTGAGATCATAAATGGCACATCAGAGTCTTCTTCACTTGTGCCCAGGAATCAGACTCTCACTGTGGCCAATACTAACACTGCAGCATCATTTTTGGCTGGCCGTAGTTGGCAGGGGCTGGAGCCCAATCTGGGGCAGACGCCAGTGGTGAAAGCTGCGGAGGGACGGAGAGGCATTGCAATCGCTTATGAGGAGGAGGGTGTGGGTAATAAAGATGCTTTAACATCTCCTCAAAAATCATAACACTCATTTACTATTGGACTGTCACATAAATCAAAGGACTACTTTCACACTCACATCACATGAATCACATCAGTATATTGAAGAGGATTTAATTGTCGGTAATAATACATCTTTTGGGGACATGTTTTAAGTCTCTTGATAATGGTGTTTCTTTTGCTGCTGGTCAAATATCAAGGAAGGTAAATATAATAATATTGGTTAAATATATGAATGTGAAGTTCTATTGTGCTACCAATACGGTAACAAGCTATAGAAAGCAAGTTGAATAATAGAAGAAAAATCTAACAGATGTCAAATGTGCTTTAATGTTGTCTTGTTTTTAATATTATTCAAACAGA

Function

symbol description
dph2 Predicted to enable transferase activity. Predicted to be involved in peptidyl-diphthamide biosynthetic process from peptidyl-histidine. Is expressed in brain; immature eye; somite; and tail bud. Orthologous to human DPH2 (diphthamide biosynthesis 2).

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_12562467_12570436.mRNA True 2471 mRNA 0.43 15 12562467 12570774

Neighbor

gene id symbol gene type direction distance location
CI01000026_12558237_12560933 RGS9BP coding upstream 849 12558237 ~ 12561618 (+)
CI01000026_12551009_12554565 NA coding upstream 7902 12551009 ~ 12554565 (+)
CI01000026_12486292_12534245 SCRIB coding upstream 28140 12485886 ~ 12534327 (+)
CI01000026_12425699_12438163 NA coding upstream 123846 12424079 ~ 12438621 (+)
CI01000026_12203244_12209526 SHH, SHHA coding upstream 352769 12201358 ~ 12209698 (+)
CI01000026_12582462_12589223 GAREM, GAREM1 coding downstream 11530 12582304 ~ 12589557 (+)
CI01000026_12653232_12657339 CHPF2 coding downstream 82298 12653072 ~ 12657836 (+)
CI01000026_12706512_12707086 NA coding downstream 134519 12705293 ~ 12707152 (+)
CI01000026_12867260_12871481 NA coding downstream 296437 12867211 ~ 12871720 (+)
CI01000026_12929788_12932668 HRH3 coding downstream 358865 12929639 ~ 12933391 (+)
G134314 NA non-coding upstream 80997 12456629 ~ 12481470 (+)
G134329 NA non-coding upstream 106005 12451916 ~ 12456462 (+)
G134282 NA non-coding upstream 152731 12409380 ~ 12409736 (+)
G134271 NA non-coding upstream 166177 12395063 ~ 12396290 (+)
G134306 NA non-coding downstream 25022 12595796 ~ 12597699 (+)
G134348 NA non-coding downstream 33826 12604600 ~ 12605365 (+)
G134350 NA non-coding downstream 38492 12609266 ~ 12609676 (+)
G134356 NA non-coding downstream 46181 12616955 ~ 12617540 (+)
G134357 NA non-coding downstream 48667 12619441 ~ 12621548 (+)
G133542 NA other upstream 1085560 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 1307394 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 1483387 11075784 ~ 11079080 (+)
G133192 NA other upstream 2400506 10159819 ~ 10161961 (+)
G132667 NA other upstream 2993307 9568739 ~ 9569160 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location