XLOC_008404 (plin2)


Basic Information

Item Value
gene id XLOC_008404
gene name plin2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17030473 ~ 17048822 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016819
caacattttcaaaatgacaaAGTCCTTGTGACGATGGCCGATGACTTTTAACCTATATGTTATGCCCTGATACAACATATTCGccttaattcacctgtacagaCACTATGTGTGAACTTCAACCTAGATTACACAATAATTAGGTCAATAAAACCGGAAGTTGCTACAGTATGTCAGCTGCTAACGTTACGTAGTTTTTGTAAAACATGTTTCTGTTGTCAAACTGCACCTTAAACTCAAACCGTGTTATGTTTTTAATTGTGTATTATAAACGTTTGAGAACTAATGCTTAACCGTCAAATGAACCTCACAAACACCGGTTTATGCCATTTTCATGGTCTCAGCGTGAAATCCCCGACCTTTGGACTACATCGCTCGTCGTGACGTCATCTTTAGTCTATCGCCACAGCTCCTTCCTATAAAATCTAAAGCAGTCGATCAATCCTCATTACAGCAACTGAGAAGCACTTCATGAGCTTTCTTCTGTACTTGAAACTGCACAACAGATTTTCTGCTAACATGGGTTCTATGGAGGATGTAAATAACCAGAATGTGGTTGCCCGAATTGTTCACCTTCCCCTGGTTGTTTCCACCTATGACATGATGTCGAACGTGTACGTCAACACCAAGAACAACCACCCATACCTGAAGTCTGTGTGCGAGGTTGCTGAGAATGGTGTCAAATCCATAACCTCAGCTGCCTTTCACAGGTCTTTACCAATCATTGGCAAACTGGAGCCTCAGAtctctATGGCAAATGACCTGGCGTGCAAAGGACTGGATAAGATAGAAAAGACTCTGCCCATCCTACACAAGCCATCTGAACAGATTATGGCCAATGCTAAAGATGCAGTGACAGGAGCCAAGGAGGCTGTCAGCGGGACTGTGAGCGGTGCCAAGGATTCTGTCTCCTTCACCCTAAATGATGTGATGGACCGAACACGCGGGGCAGTGCAGGGCAGCGTGGAGAAGACCAAGACTGTGGTCAGCGGTGGAGTCCAGACAGTGATGGACAGCAGGATGCTCAAACTGGTGTCCAGCAGAGTGGACAATGCACTGAGCACATCTGAGACGCTGCTGGAGCACTACTTGCCTGAAAATGAGGAGGAAAAAGAAGGTGAAGAGAGGAATACTGAAGGATTGGAAAATGACAGCGATTTGGCCAATTATTATGTCCGACTGGGCTCTCTGTCCATTAAAGTCAGAGACAGGACTTATCAGAGAGCCGTGGAGAAAGTTCGTCATGCCGTGCAGCGCGGACAGGAGTCCATTTCACAGCTTAACCACACAATGGATATAATCGAATTTACCAGGAAGAATATTGATGGGTCTAACCAGAAGCTGCAGGAGAAACTGGGTTCACTAATGGGCTGGAAGAGCGTTTCTCAAAGCCAAGAAACAGAGAGCGAAACAGACAGTGAAGCTGAGCAAATTGAGTCGCGCACACTGACCATCGCCCACAGCCTCAGCCAGCAGCTTCAGAGCACATGTGTGGTGCTGGTGTCCAGTCTCAGGGGTCTCCCTCAGCACGTCCAGCTCCAGGTGGGCTCCGTCAGCCGCTCCGCATTGGAGATCTACAGCAGCTTCAGTAAAGCGGCCGTGCTGGGGGATCTGTCCAGCACCGTCCTGTCCTCCAGCCGCTCACAGCTCAGCAGAATCACAGAGTCCATGGACAACGTGATGGACTACCTGCTCAACAACACTCCTCTCAACTGGCTGGTCGGACCGTTTTACCCACGTGTGGAGCGCGCCGTTGAAAACGAGGCCAAATGTAGCAAACAGAGGACCCTTCAAGTCACTGAATGAAGCTTAATCGAATATTAAAATCCTGTCATTATTGAGTCACCTGATTTGTtttctgaacacaaaagacgttattttaataatgttgtaaacCGGTAGACATTGACCTCCATTTTGTTTCCCTACACACAAAGTCATGACAGcaaatgtttctatgttcctttaACTTATCTTAATACGTTAATCAAGttgtgacacagtggctcagtggttagcactgtcgccttacagcaagaaggtcactgatttga
>TCONS_00016820
TTCATGAGCTTTCTTCTGTACTTGAAACTGCACAACAGATTTTCTGCTAACATGGGTTCTATGGAGGATGTAAATAACCAGAATGTGGTTGCCCGAATTGTTCACCTTCCCCTGGTTGTTTCCACCTATGACATGATGTCGAACGTGTACGTCAACACCAAGAACAACCACCCATACCTGAAGTCTGTGTGCGAGGTTGCTGAGAATGGTGTCAAATCCATAACCTCAGCTGCCTTTCACAGGTCTTTACCAATCATTGGCAAACTGGAGCCTCAGAGACTGGATAAGATAGAAAAGACTCTGCCCATCCTACACAAGCCATCTGAACAGATTATGGCCAATGCTAAAGATGCAGTGACAGGAGCCAAGGAGGCTGTCAGCGGGACTGTGAGCGGTGCCAAGGATTCTGTCTCCTTCACCCTAAATGATGTGATGGACCGAACACGCGGGGCAGTGCAGGGCAGCGTGGAGAAGACCAAGACTGTGGTCAGCGGTGGAGTCCAGACAGTGATGGACAGCAGGATGCTCAAACTGGTGTCCAGCAGAGTGGACAATGCACTGAGCACATCTGAGACGCTGCTGGAGCACTACTTGCCTGAAAATGAGGAGGAAAAAGAAGGTGAAGAGAGGAATACTGAAGGATTGGAAAATGACAGCGATTTGGCCAATTATTATGTCCGACTGGGCTCTCTGTCCATTAAAGTCAGAGACAGGACTTATCAGAGAGCCGTGGAGAAAGTTCGTCATGCCGTGCAGCGCGGACAGGAGTCCATTTCACAGCTTAACCACACAATGGATATA
>TCONS_00016821
TTGCAGATTTTCTGCTAACATGGGTTCTATGGAGGATGTAAATAACCAGAATGTGGTTGCCCGAATTGTTCACCTTCCCCTGGTTGTTTCCACCTATGACATGATGTCGAACGTGTACGTCAACACCAAGAACAACCACCCATACCTGAAGTCTGTGTGCGAGGTTGCTGAGAATGGTGTCAAATCCATAACCTCAGCTGCCTTTCACAGGTCTTTACCAATCATTGGCAAACTGGAGCCTCAGAtctctATGGCAAATGACCTGGCGTGCAAAGGACTGGATAAGATAGAAAAGACTCTGCCCATCCTACACAAGCCATCTGAACAGATTATGGCCAATGCTAAAGATGCAGTGACAGGAGCCAAGGAGGCTGTCAGCGGGACTGTGAGCGGTGCCAAGGATTCTGTCTCCTTCACCCTAAATGATGTGATGGACCGAACACGCGGGGCAGTGCAGGGCAGCGTGGAGAAGACCAAGACTGTGGTCAGCGGTGGAGTCCAGACAGTGATGGACAGCAGGATGCTCAAACTGGTGTCCAGCAGAGTGGACAATGCACTGAGCACATCTGAGACGCTGCTGGAGCACTACTTGCCTGAAAATGAGGAGGAAAAAGAAGGTGAAGAGAGGAATACTGAAGGATTGGAAAATGACAGCGATTTGGCCAATTATTATGTCCGACTGGGCTCTCTGTCCATTAAAGTCAGAGACAGGACTTATCAGAGAGCCGTGGAGAAAGTTCGTCATGCCGTGCAGCGCGGACAGGAGTCCATTTCACAGCTTAACCACACAATGGATATAATCGAATTTACCAGGAAGAATATTGATGGGTCTAACCAGAAGCTGCAGGAGAAACTGGGTTCACTAATGGGCTGGAAGAGCGTTTCTCAAAGCCAAGAAACAGAGAGCGAAACAGACAGTGAAGCTGAGCAAATTGAGTCGCGCACACTGACCATCGCCCACAGCCTCAGCCAGCAGCTTCAGAGCACATGTGTGGTGCTGGTGTCCAGTCTCAGGGGTCTCCCTCAGCACGTCCAGCTCCAGGTGGGCTCCGTCAGCCGCTCCGCATTGGAGATCTACAGCAGCTTCAGTAAAGCGGCCGTGCTGGGGGATCTGTCCAGCACCGTCCTGTCCTCCAGCCGCTCACAGCTCAGCAGAATCACAGAGTCCATGGACAACGTGATGGACTACCTGCTCAACAACACTCCTCTCAACTGGCTGGTCGGACCGTTTTACCCACGTGTGGAGCGCGCCGTTGAAAACGAGGCCAAATGTAGCAAACAGAGGACCCTTCAAGTCACTGAATGA

Function

symbol description
plin2 Predicted to be involved in lipid storage and positive regulation of sequestering of triglyceride. Predicted to be active in cytosol and lipid droplet. Is expressed in digestive system. Orthologous to human PLIN2 (perilipin 2).

GO:

id name namespace
GO:0010890 positive regulation of sequestering of triglyceride biological_process
GO:0019915 lipid storage biological_process
GO:0005811 lipid droplet cellular_component
GO:0005829 cytosol cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03320 PPAR signaling pathway
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-050913-12 Predicted to be involved in lipid storage and positive regulation of sequestering of triglyceride. Predicted to be active in cytosol and lipid droplet. Is expressed in digestive system. Orthologous to human PLIN2 (perilipin 2).

Ensembl:

ensembl_id ENSDARG00000042332

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016819 False 2054 mRNA 0.47 8 17030473 17048822
TCONS_00016820 False 801 mRNA 0.49 6 17030941 17043649
TCONS_00016821 True 1306 mRNA 0.51 7 17031111 17048574

Neighbor

gene id symbol gene type direction distance location
XLOC_008403 BX571762.2 coding upstream 109486 16914731 ~ 16920987 (+)
XLOC_008402 ypel2b coding upstream 115828 16897554 ~ 16914645 (+)
XLOC_008401 gdpd1 coding upstream 135598 16886196 ~ 16894875 (+)
XLOC_008400 BX649487.2 coding upstream 200597 16829762 ~ 16829876 (+)
XLOC_008399 galnt17 coding upstream 484001 16521785 ~ 16546472 (+)
XLOC_008405 clptm1 coding downstream 25363 17074185 ~ 17095655 (+)
XLOC_008406 relb coding downstream 51590 17100412 ~ 17125217 (+)
XLOC_008407 si:ch73-223p23.2 coding downstream 202369 17251191 ~ 17255307 (+)
XLOC_008408 dhx40 coding downstream 209424 17258246 ~ 17285188 (+)
XLOC_008409 cltcb coding downstream 237167 17285989 ~ 17340198 (+)
XLOC_008463 BX663520.1 misc downstream 4203369 21252191 ~ 21252282 (+)
XLOC_008398 CR847990.1 non-coding upstream 511390 16518967 ~ 16519083 (+)
XLOC_008394 BX511308.1 non-coding upstream 984969 16035869 ~ 16045504 (+)
XLOC_008393 NA non-coding upstream 1011684 15987054 ~ 16018789 (+)
XLOC_008411 dre-mir-21-2 non-coding downstream 324967 17373789 ~ 17373915 (+)
XLOC_008412 CR848791.3 non-coding downstream 327545 17376367 ~ 17378063 (+)
XLOC_008419 NA non-coding downstream 837376 17886198 ~ 17936128 (+)
XLOC_008420 CR385077.2 non-coding downstream 1037880 18086702 ~ 18086816 (+)
XLOC_008422 NA non-coding downstream 1336768 18385590 ~ 18401208 (+)

Expression


Co-expression Network