CI01000026_12653232_12657339 (CHPF2)


Basic Information

Item Value
gene id CI01000026_12653232_12657339
gene name CHPF2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12653072 ~ 12657836 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_12653232_12657339.mRNA
TTATATAGTGCCAGGAATTCAAATACTTACCTTCACAGTATCACTGTCAAATGCCTCTACTGTAATTAAGACTTTGCTGTTACTTGAACTGCTCTCTAAGGAGACCTATCAAGACTTGACGCCCATTGACTGGCACGCAGAAGACTCTGTCTGCTCCACCATGCGTCTGTCTTCTTTCCTGGCTGTTTTTCGGCCTGCCCTGCCTCTCATTCTGGGCCTCTCTTTGGGCTGTAGTCTCAGTCTCCTGATGGTGTCCTGGACACAGGGGGAAACCGATGAGGCTTGTGGAGATGAACTGGGAAATGGGAGACTCATACACAGTGGTCATATCAGGGATCACCAGGATAGCCAAGATGGGAATGAGGACTTCCAACCTCGCATTGTGCCCTATCACAAGGACCCCAACAAACCACACAAGAAAGTTCTCAGGACTCGCTACATCCACACAGAGCTGGGCATCCGAGAACGGCTCCTGGTGGGCATCCTGAGCTCACGCGCCACTCTGAACACGCTAGGGGTGGCAGTCAATAAAACGGTAGCTCACCGTTTTCACCGTACCTTCTTTTTCACTGGCTTACGGAGTACAAAGGCACCACACGGCATGACTGTTGTTGCTCATGGTGATGATCGACCCGTCTGGCTGATGTATGAAACTATACGGCACCTTCACCAACACCACGGCAATGAGTACGACTGGTTTTACCTTGCGCAAGATGATACGTACACACAAGCTGAAAGGGTCATGGAGCTGGTTAATCATCTTAGTGCAGGACAGGATATGTACATGGGACGAGCAGAGGAGTTTATCGGGGGTGAAGAACGTGCACGATATTGCCATGGTGGATATGGGTATCTGTTGTCGCGCAGCCTTCTAGCCCGACTGCAGCCCCACCTGGACTCTTGTCGAAATGACATCCTCAGCGTCAGGCCAGATGAGTGGCTTGGTCGCTGCATCATCGATTACCTGGGTCTTAGCTGTGTGGAGAAGCATCAGGAGATGACCTACCGTTACTTTGAGCTGCAGAAGAACGTGGACCCTGAGCGTGAGGACAGTGCACAGTTTAAAAATGCCTTCACTGTCCACCCCGTCTCTGAACCTGTCCTGATGTATCGCCTACACAAACGCTATAACCAGATTGAACTGGACTGGACCTATGCACAAATTCAGCAGTTACAGAACCAGATCAGTAACATAAGTGAGCTCACTCCAGAGGGCAAAGCCGGAGCCACGTGGCCCATCGGAATCAACCCACCCTTCCGACCCAAAACCCGCTTTGAGGTGATCAACTGGGAATACTTCACCGAAGAGCACATTTATTCATGTGCGGACAGCTCTCCGAAGTGTGAGCTTCGAGGTGCGGACCGAGCAGATGTCAGCTCAGTCCTGGAGACTGCAGTGGGCCGTCTGAACGAGCGCTATCAGCCCCAGTTACGCTTCCGTAAGCGGCGTCTGCTGAACGGGTACCGACGCTTCGATCCCACACGAGGCATGGAGTATGTGCTGGATTTGGCCCTGGAAGCTTTTACTCAGAAGGGCCACAGTCAGGTCATAGCCAAACGGGTGAGTCTGCTGAAGCCGCTTAGTGCTGTCGAGATCATCCCTATGCCATATGTAACAGAAGCGACACGGGTACAGGTGATCCTCCCTGTGACGGCACACGATCAAGACTTTGTGGGTAACTTCCTTGACATGTATGTCATGAATGCTCTGGATACCCATGACAATGCTCTGCTCACCTTCTTGTTTGTGTATGATCCCTTCGATGCCCAGCGAGTCAGCCAGACGGACGTCTTTGCCGGTGTCAAAGCCATGATTGGTGAGGTAGAGAAACGTTACGGTGATGTAAAGATTCCTTGGATTAGTGTAAAGACTGAAGTTCCTTCACAGGTCAAGCTGATGGACATCATCTCCAAGAAGCACCCAGTAGACACCCTGTTCTTCCTGGCCAGCGTATGGACCGAGGTCAACGCTGACTTCCTCAACCGCTGCCGTATGAACGCTATCAGCAATTGGCAGGTCTTCTTCCCAATCCACTTTCAAGAGTACAGTCCAGCTCTGGTCTACCGCGACCAACAACCTTCTGCCGCTTCATCCTTTGCGTCCGAGACGCTGCGTGATGGCCACTTTGACCGCCACATCTTTGAAGAAGCCTGCTTTTACAATGCAGATTACATGGCTGCCCGCACAAAGATGGCCGCTGACATCTTGGACAATGATGAATTGCTTGAGAGCATGGACGTCTACGAGATCTTTGTACGTTACTCTGGGTTGCACGTGTTTCGGGCTGTCGAGCCGGCACTAGTTCAGAAGTATGTGCACAGGGAATGTAACCCACGGTTCAGTGAGGACATCTATCACCGCTGTGTTCTCAGTAACCTCGAGGGGCTGGCCTCTCGATCACACCTAGCAATGGCTTTGTTTGAACAGGAGCAGGCTAACAGCACCTGAACTGACTACTACTGCAACATTAAGATGGCTTTAACTTCTTGATTCTCATTTAGGTGGCCTTTAATGACCTACTGATAGTGATTGAATGAATTTCACCCTGATGCTATGAACTTCTCTGAACAGATCATCCAGTGACTCAATTTAACTAAACACAGTGAAGTTGCCTTGTCAAAGGGATAGTTCACATAAAAAATGATAATTCTGTCATCATTTACTCACCCTCTCGTCGTTCTTTGGATCATAAAAAGAGATTTTGATATCCGTACAATGAATGTCAAAGGTGACCAATTCATCAAAATCTCTTCTTTTGTGTTCTGCAGAGAAAAGAGTGTAATTCAGGTTTGAACTAACTTTTAAGTTGAGCAAACAATGACAAAATTTCCATTTTCTGGGTGAACTATCCCTGTAAGGATCTACATATGGTGGAATTGACTTATAAAAGTGTGACTAATATAACCAGAGAACAATACTGATGAAGTCTTCATAACTCGCTTTAA

Function

symbol description
chpf2 Predicted to enable glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity. Predicted to be involved in chondroitin sulfate biosynthetic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cranial cartilage; nervous system; notochord; optic cup; and tail bud. Orthologous to human CHPF2 (chondroitin polymerizing factor 2).

GO:

id name namespace
GO:0008376 acetylgalactosaminyltransferase activity molecular_function

KEGG:

id description
K03419 CHPF2; chondroitin polymerizing factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_12653232_12657339.mRNA True 2946 mRNA 0.49 4 12653072 12657836

Neighbor

gene id symbol gene type direction distance location
CI01000026_12582462_12589223 GAREM, GAREM1 coding upstream 63515 12582304 ~ 12589557 (+)
CI01000026_12562467_12570436 DPH2 coding upstream 82298 12562467 ~ 12570774 (+)
CI01000026_12558237_12560933 RGS9BP coding upstream 91454 12558237 ~ 12561618 (+)
CI01000026_12551009_12554565 NA coding upstream 98507 12551009 ~ 12554565 (+)
CI01000026_12486292_12534245 SCRIB coding upstream 118745 12485886 ~ 12534327 (+)
CI01000026_12706512_12707086 NA coding downstream 47457 12705293 ~ 12707152 (+)
CI01000026_12867260_12871481 NA coding downstream 209375 12867211 ~ 12871720 (+)
CI01000026_12929788_12932668 HRH3 coding downstream 271803 12929639 ~ 12933391 (+)
CI01000026_12966022_12977066 ORC6 coding downstream 307760 12965596 ~ 12977588 (+)
CI01000026_13019100_13028307 GPT2 coding downstream 360284 13018120 ~ 13029368 (+)
G134332 NA non-coding upstream 19644 12633109 ~ 12633428 (+)
G134326 NA non-coding upstream 24698 12628018 ~ 12628374 (+)
G134319 NA non-coding upstream 25344 12625829 ~ 12627728 (+)
G134359 NA non-coding upstream 30357 12621919 ~ 12622715 (+)
G134357 NA non-coding upstream 31524 12619441 ~ 12621548 (+)
G134325 NA non-coding downstream 51130 12708966 ~ 12709598 (+)
G134317 NA non-coding downstream 60985 12718821 ~ 12736010 (+)
G134301 NA non-coding downstream 66543 12724379 ~ 12728852 (+)
G134686 NA non-coding downstream 130357 12788193 ~ 12788401 (+)
G134688 NA non-coding downstream 131374 12789210 ~ 12789624 (+)
G133542 NA other upstream 1176165 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 1397999 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 1573992 11075784 ~ 11079080 (+)
G133192 NA other upstream 2491111 10159819 ~ 10161961 (+)
G132667 NA other upstream 3083912 9568739 ~ 9569160 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033974 chpf2 coding NC_007118.7 CM002891.2 41421998 ~ 41433786 (+)
bowfin (Amia calva) AMCG00019082 chpf2,LOC106590171 coding CM030124.1 CM030124.1 2391707 ~ 2402129 (+)