CI01000026_12867260_12871481


Basic Information

Item Value
gene id CI01000026_12867260_12871481
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12867211 ~ 12871720 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_12867260_12871481.mRNA
CTATAAAAGATGCAATTCCAATGATTTTTACCCCGCAAACCAGACAGTCATGGAGTCGAGAGCCTTCTGTCTGCTGTTACTCTGCTGTTGCATCAATATCTGCAACCTTTATCCACTCATTCATCCTAGTAATGGGCTCAATGCATGCCTGAAAAACCCATCTTCAATAGCGCTGGAGGTTCTACCAGGTGGAGGCTGGGATAACCTGCGCAACATAGACATGGGACGGGTGATGAATTTGAGCTATTCCCAGTGTCAGACCACAGAAGATGGTGTCTATATCATTCCAGATGAAGTCTTTGTCATTCCACAAAAAGTGAGCGGAGTGGAAACAAACTCTGAGATTATCATGTCATGGATGGACCAGACAAGCTCCACTTCAAGCTCCATAAATGCAGATGCTTCCTTTCTTGTGGTGCTCAATGGAAAATTCTCTAAAGAAAGCCAACGTATTAAAACTCACCAAGTGAAAGAGAGTGCTGTAACAGCACGAGTTCAAGTCCGTAACCATCTGTACACAGTAAAGGCATATCCCAACTTCCCTCTGGACTCCCGCTTTGCTCAACAGGCAGAGGAAATCACAGACGCTATTAAGAACAATCAAACACGTCTAGCAACATATCTGTCAGAGAAACTCATACTTGATTATGGTACTCATGTCATCACAAGTGTTGATGCTGGTGCTACTTTGGTGCAAGAGGAATATCTAAAAACATCTTATATCCAGAGGAATCTGTTAGAATTGTCTTCTATTTCTGCTTCAGCAGGCGGTTCCTTCTTTGAAAAAGTTAAATTTGATATTGGTGCCAGTACATCCCAGGGAACCTCTAAAACCAGTGGTTATCAGGGTAACATCACATATTCTTTCATCCAGAGCCATGGTGGAGCTTTATTCTACCCAGGCATCACTCTGCAGAAGTGGCAAGAGAGTACGCTCAATAATCTGGTGGCTATTGACCGCTCTGGCCTGCCGCTGCACTATTTTCTTAATCCATCCACACTCCCAGACCTCCCAGCACCAACAGTAAATGAATTAGCATTGTTAGTTTCTCAGGCTGCAGAGAAATACTATAAAGTAAATACCATTCCAGGGTGTATAAATCCAGATTCCAAAAACTTCAACTTCCAGGCAAATGTAGATGATGCTTCCTGTGAAGGACCAGTCACCAATCTTAGCTTTGGTGGCATTTACCAACGATGCACTCCATTGACATCAGATGGAAATACCATCTGTGATGAGACAGCACAAAAAAACCCAGCCACTGGTGATTATTCTTGCCCTGTGCAGTACAACACCACCCTGTTACGCTCTGAGACAGTAGAAAAAGGTTATACTCGTAATGAGTGCCAAAAGTCCTGTAAATCATGTGGTTTCTTATGGTTGTCTACTTGTTGTGACCAAACATGTAATGATGTTTATTATGTCCGTCGTGCAAAAGTGGACACCTACTGGTGTCCCACAACTCAGAAAACACCTCTGAACTCTGGATACCTCTTTGGAGGTCTATATGGATCATCTTTGCAAAACCCATTTACCAAATCTTACAGCTGTCCTTCAAATTTCTTTGTCCAAAAATTTTTGTCTAGTGGCATGACAGTTTGTCTGAGCAATGACTATGCGACAGCAACAAAATACTCTGTGCCTTTTGGTGGCTTCTTCAGCTGCCAGTCTGGCAATCCTTTTGCAATGGGTCAATCTCGCTGCCCACCTCAGTTCAGCCAAAATCTTGCTGCCATCAGTGATGGCTGTCAGATTTTATACTGTGTCCAGTCCGGTGTGTTCAGTGGTGGTCAGATAAAACCTGTCCGCCTCCCACCATTCACAAGCCCACCACTTGTTGGCATGACTGCGACAAACTCTGTAGCTATAATGACAGAAGGTAATCTTTCCTGGGTGAGAGTTGGACAAACAAAGACTTGGCAACTGGCAAATCCTGTCGAAATAAATCAAATGTTTGCGACATCTGGAGGAGAAAAGGAGGGTGTAACCTGTGGTCTGATAGCTTTGATTGCTCTTGTGGTGTCAGGAACTCTTTATTAAAACAAAGAGGTGATCTTACTTCGAGATTTCATTAATTACATTACATATAATTGATTTCTTTAGCATACGCTTTTATTCAAAGCTACTTACGAATGAGGAAATTGTGTACTGTAACAGTAATCACATTGATTGGCATGTGGTGATGGGTATGAGGAATGTGCAGCTTTTTCCCCCTTCTCATTATTATCATTATCCTAAGCAATACAGATTTATATTTCATGAATGAAAAACACAAATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_12867260_12871481.mRNA True 2280 mRNA 0.42 2 12867211 12871720

Neighbor

gene id symbol gene type direction distance location
CI01000026_12706512_12707086 NA coding upstream 160059 12705293 ~ 12707152 (+)
CI01000026_12653232_12657339 CHPF2 coding upstream 209375 12653072 ~ 12657836 (+)
CI01000026_12582462_12589223 GAREM, GAREM1 coding upstream 277654 12582304 ~ 12589557 (+)
CI01000026_12562467_12570436 DPH2 coding upstream 296437 12562467 ~ 12570774 (+)
CI01000026_12558237_12560933 RGS9BP coding upstream 305593 12558237 ~ 12561618 (+)
CI01000026_12929788_12932668 HRH3 coding downstream 57919 12929639 ~ 12933391 (+)
CI01000026_12966022_12977066 ORC6 coding downstream 93876 12965596 ~ 12977588 (+)
CI01000026_13019100_13028307 GPT2 coding downstream 146400 13018120 ~ 13029368 (+)
CI01000026_13218786_13290069 PHKB coding downstream 347066 13218786 ~ 13290154 (+)
CI01000026_13318769_13335447 NA coding downstream 446363 13318083 ~ 13336525 (+)
G134699 NA non-coding upstream 17431 12849287 ~ 12849780 (+)
G134691 NA non-coding upstream 56498 12803819 ~ 12810713 (+)
G134689 NA non-coding upstream 65604 12789703 ~ 12801607 (+)
G134688 NA non-coding upstream 77587 12789210 ~ 12789624 (+)
G134686 NA non-coding upstream 78810 12788193 ~ 12788401 (+)
G134694 NA non-coding downstream 9538 12881258 ~ 12883309 (+)
G134753 NA non-coding downstream 113127 12984847 ~ 12997454 (+)
G134759 NA non-coding downstream 133045 13004765 ~ 13004965 (+)
G134761 NA non-coding downstream 133722 13005442 ~ 13005669 (+)
G134762 NA non-coding downstream 134252 13005972 ~ 13006174 (+)
G133542 NA other upstream 1390304 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 1612138 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 1788131 11075784 ~ 11079080 (+)
G133192 NA other upstream 2705250 10159819 ~ 10161961 (+)
G132667 NA other upstream 3298051 9568739 ~ 9569160 (+)

Expression


Co-expression Network