CI01000026_13082079_13210565 (ITFG1)


Basic Information

Item Value
gene id CI01000026_13082079_13210565
gene name ITFG1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 13082079 ~ 13210565 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_13082079_13210565.mRNA
ATGTTGTTGTCATGGGCTTGTTTTTTGTCGTTATCATTAAGTTTTATCGGACAACATGTCACGTTTGCATTGCAGGACGTTACTAGGGATTTATTTGCCTCGGAGAACTATGGTACAGTAGCGGCTTTCGGTGACTTCAACTCTGATAAACAGACTGACATTTTCATCATCAGGAAGCGATCTGAGCTGTTGATTTTCTTGGCTGATCTTAAAGCTCCTTATTTCAAACCTAAAGTCCATCTGACTAAAGAGGTTTTCCCAAGTGACTTCAGCATAAGCAGTGTGGTCCCGGGTGATTACGATGGAGACTCTCAGATGGATGTGCTTCTCACTGGCCACTCAAAGGGCCCTTCACAGACAATTGCCATCATCTTCTGGGGACATAACCAAACTTTGGACCAGAGTGAAAAGGTGGAGCTTAACAGGACTTTTGGTGATCAGCCCCTCGTCATGGACTTTAATGGGGACATGATTCCAGACATTTTTGGATCTGTTGGTGGTTCATCAGAGGTTTGCTATCTCAGGAACAGAGAACAGAAATGTGAGAAGGCTCTTGGATCTGATGTCAAAATGCGCATCCCTCATTCCAATGCTTTCATTGACCTTAACAAGGACTTCACTGCCGATTTGTTCCTCACCACCGAATCAAATACATTTGAGACCTGGATCAATAAGGATGGGAACTTCACCAGAACCCTTTCTGGAAATGCACCGGAAAATGCAATGCAAGTGGGTCAATCTGCATTTGTAGACTTCGACGGTGACGGCACCCAAGACCACCTCTTGCCAGTCTGTATGGATGATTCATGTGGCAAAAGTGCAATTTACCTGGCCAAGACTGGAGGGACAGAGTGGGTGCCGGTGCTGACAGACTTCAGATGGAAGGATTCAGTGTGGGGCTTTGTGCCCTTTCAAGGCAGTTCCACTTCGGAAGAACTGCAAATTCCCATCACCCTGCACTTAGGAGACTATAACTTAGATGGCTTTCCCGATGCCCTCGTCATCCTCCGTAACACCAGCAGCGGCAGCACGCAGCAGCAGGCATTCCTGCTGGAGAATGTGCCGTGTAATAACGCGAGCTGTCGGGATGTGGGCCGCATGTTCCGTGTGCACTGGGAACAGTCAGATATCAGTGCCATCCCCAGGGCTGTTGTGGCCACTTTTTTTGACATCTATGAGGACGGAATATTAGATATGATTGTGCTCAGCAAGGTGGAAAAGGAAGACCTCGTCATCCACGCTTTGAAGAACAATTATGAGGCTGATGCATATTTCGTAAAAGTGATCGTGCTCAGTGGCCTGTGCTCCAATGACTGTCCAGAGAATGTTAAGCCCTTCGGTGTGAATCAGCCTGGCCCGTATGTCATGTACACATCAGTGGACTCCAACGGTTATCTAAAGAACGCGTCTGCGGGGCAGCTCAGCCAGTCGGCTCATCTCGCACTCCAGCTGCCCTACACCGTGCTCGGTCTGGGGCGCAGCGCCAACTTCCTGGATCACCTGTTTGTGGGCATCCCCCGGCCCCCTGGAGGGAAGGATGTGAGGAAACAGGAGTGGACCGCTATCATTCCTAACTCCCAGCTCATCGTTATACCATACCCACAGAATGACCCTCGCAGCTGGAGTGCGAAGCTCTACCTAACCCCAAGTAATATAGTCTTATTGACAGCGATAGCACTGATTGGCGTGTGCGTCTTTATTCTCGTCATCATCGGGATACTGCACTGGCAGGAGAAGGTGAGAACAAACATCTCAGCCTTTTATTTTCATCCTTTC

Function

symbol description
itfg1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ITFG1 (integrin alpha FG-GAP repeat containing 1).

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG:

id description
K17257 ITFG1; integrin alpha FG-GAP repeat containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_13082079_13210565.mRNA True 1776 mRNA 0.49 17 13082079 13210565

Neighbor

gene id symbol gene type direction distance location
CI01000026_13053390_13065531 NETO2 coding downstream 16548 13051213 ~ 13065531 (-)
CI01000026_13039331_13039570 NA coding downstream 42509 13039271 ~ 13039570 (-)
CI01000026_13033698_13034704 NA coding downstream 46459 13033625 ~ 13035620 (-)
CI01000026_13010221_13016325 CLG3H16ORF87, C5H16ORF87 coding downstream 65754 13009857 ~ 13016325 (-)
CI01000026_12985635_12997297 NA coding downstream 84782 12985362 ~ 12997297 (-)
CI01000026_13299234_13300178 NA coding upstream 87917 13298482 ~ 13300940 (-)
CI01000026_13744060_13791879 CDH8 coding upstream 533495 13744060 ~ 13791879 (-)
CI01000026_14156809_14170720 CDH11 coding upstream 945784 14156349 ~ 14170720 (-)
CI01000026_14376741_14381102 NA coding upstream 1166005 14376570 ~ 14382093 (-)
CI01000026_14680424_14682203 TK2 coding upstream 1469794 14680359 ~ 14682203 (-)
G134986 NA non-coding downstream 64001 13017868 ~ 13018078 (-)
G134931 NA non-coding downstream 210340 12867251 ~ 12871739 (-)
G134921 NA non-coding downstream 232299 12849353 ~ 12849780 (-)
G134916 NA non-coding downstream 248647 12833186 ~ 12833432 (-)
G134680 NA non-coding downstream 299086 12782715 ~ 12782993 (-)
G135043 NA non-coding upstream 93730 13304295 ~ 13304578 (-)
G135053 NA non-coding upstream 114626 13325191 ~ 13325401 (-)
G135223 NA non-coding upstream 409542 13620107 ~ 13620327 (-)
G135241 NA non-coding upstream 434215 13644780 ~ 13645099 (-)
G133802 NA other downstream 1774898 11301915 ~ 11307181 (-)
G133790 NA other downstream 2244474 10834015 ~ 10859589 (-)
CI01000026_10788054_10788652 CD59 other downstream 2291925 10787339 ~ 10789709 (-)
CI01000026_10347872_10351783 CEBPA other downstream 2733122 10347746 ~ 10351783 (-)
G132721 NA other downstream 3531435 9550030 ~ 9550644 (-)
G136110 NA other upstream 1344352 14554917 ~ 14555436 (-)
CI01000026_16756776_16760261 RBPMS2A, RBPMS2B, RBPMS2 other upstream 3546164 16756729 ~ 16761341 (-)
G137667 NA other upstream 3595799 16806364 ~ 16808372 (-)
G137914 NA other upstream 3772686 16983251 ~ 16984352 (-)
G137967 NA other upstream 3857783 17068348 ~ 17069433 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034996 itfg1 coding NC_007118.7 CM002891.2 41981366 ~ 42206720 (-)