XLOC_008407 (si:ch73-223p23.2)


Basic Information

Item Value
gene id XLOC_008407
gene name si:ch73-223p23.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17251191 ~ 17255307 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016827
TACACATTCCTCTCCATTTCTGTCTTGGTCTTTCAGTCTAGACATCTTGAATGACATGCATCATGAACATTTTATGCCTTTGGATATTTGTTGGTGCTCTGGTGTCTTCTAATGCTTTGGGCTGCGGGAGAGTAAGATATACAGAAGTCAGCATCAATGCCTCTCTGAAATCTCAAGTCTTTCTCCCGTGTCACTTTAATACAAGCTTGAACAATGAAACAGTGATATGGAGTCACAATAAAGACACTCTTGTAAAGATCATAGCTGATGGCAGAATCTACTTTGAAAATCCTAGAGAAGGACGAGTGACTGCTTTTCCACTTTTAGTTGAGGAAGGAAACTTCTCCATCCTCATCCATGATCTGGATTCTTCAGAGGTTGGTGTGTACTTTTGTGAGTGGAACAGTGAATGCTGGAGAGTGAGGATCACAGAAATACAGAATCATTCATCGCAGGaaatttattatttaagtcCCTGGTTCTACTTTGCTGCTGGAGCTGGGTTGTTTATCATGCTTTTCATTGTATTCAGCATGATTTCAAAACTATTTGGAAAGGATAAATCATCCGAGTCTAACTCTGTTAATGTAATACATAGTGAAGGCAACTATCCCGTCGAACAAAGCAGAAGTCACAGAAACAACCGGGGTGAGAAACATCACTTTTTATTACAATCACACAACATACAATAAACTGACTCACAT

Function

symbol description
si:ch73-223p23.2 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097065

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016827 True 704 mRNA 0.39 5 17251191 17255307

Neighbor

gene id symbol gene type direction distance location
XLOC_008406 relb coding upstream 125974 17100412 ~ 17125217 (+)
XLOC_008405 clptm1 coding upstream 155536 17074185 ~ 17095655 (+)
XLOC_008404 plin2 coding upstream 202369 17030473 ~ 17048822 (+)
XLOC_008403 BX571762.2 coding upstream 330204 16914731 ~ 16920987 (+)
XLOC_008402 ypel2b coding upstream 336546 16897554 ~ 16914645 (+)
XLOC_008408 dhx40 coding downstream 2939 17258246 ~ 17285188 (+)
XLOC_008409 cltcb coding downstream 30682 17285989 ~ 17340198 (+)
XLOC_008410 vmp1 coding downstream 88012 17343319 ~ 17373352 (+)
XLOC_008411 dre-mir-21-2 coding downstream 118482 17373789 ~ 17373915 (+)
XLOC_008412 CR848791.3 coding downstream 121060 17376367 ~ 17378063 (+)
XLOC_008463 BX663520.1 misc downstream 3996884 21252191 ~ 21252282 (+)
XLOC_008400 BX649487.2 non-coding upstream 421315 16829762 ~ 16829876 (+)
XLOC_008398 CR847990.1 non-coding upstream 732108 16518967 ~ 16519083 (+)
XLOC_008394 BX511308.1 non-coding upstream 1205687 16035869 ~ 16045504 (+)
XLOC_008393 NA non-coding upstream 1232402 15987054 ~ 16018789 (+)
XLOC_008419 NA non-coding downstream 630891 17886198 ~ 17936128 (+)
XLOC_008420 CR385077.2 non-coding downstream 831395 18086702 ~ 18086816 (+)
XLOC_008422 NA non-coding downstream 1130283 18385590 ~ 18401208 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_02041737_02066520 NA coding CI01000053 null 2041690 ~ 2066658 (-)