XLOC_008409 (cltcb)


Basic Information

Item Value
gene id XLOC_008409
gene name cltcb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17285989 ~ 17340198 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016829
AGTCTGAGCTGTTTCCGCCGCCATTGCGGGTCTGAGTGAGTCCCATCCGTGCAGAGAGGGAAGAAAAAACATCAACCATCTGGCGGATTGGCTTGACACGACGAAAACGCGACACTTGCATTCTCCGCGTATTAAAAGCAACATTCCTACATTTGAGCTGTTTTGAATCGGGCTGTCCGCGGAGAGGAGGTCGTCGCTCGCTAAAGCTAGGCAGAATTTTTGCGAGGAGTCCGGCCGGGAGGATTGAGAACACAAAGCCCAAACCATGGCTCAGATCCTGCCTATCCGCTTCCAGGAGCACCTGCAGCTCCAGAACCTGGGCATAAACCCAGCGAACATTGGGTTTAGCACCCTCACCATGGAGTCAGACAAGTTCATCTGTATCCGGGAGAAGGTGGGCGAGCAGGCCCAGGTGGTGATCATTGACATGAGTGATCCCAATACACCCATCCGCAGGCCCATCTCTGCAGATAGCGCCATCATGAACCCGGCCAGCAAAGTCATTGCACTTAAAGGTAAGACTAAGTGCTGTTGAAGATATTTAGAATGTGGGGGGATGCATTAAAGCATGGATTTTTGAAAAGTAATGATAATTTTTGGAATGAATATAGAGCCTCTTTTTCTGCAAACCCCTCCCAACATTATATACATTGCTACTGCAGTTAATGATACACATTTGGCTGATCGAGACACTTTAGTGTAACATAGTGCATTACCTTTGTGTTGTGTCAAATGACTTAAAATACCATCCATATTTCCAAGACATGAATGTTCATATTCTAATTAATCTTTGTCTCGTTATGTATCAATTTGATTAAGTATAGCTTTAAAAATGCTCATTGGAAATGTCCTGCCGTCACAAATGCTTTGTCTGTTCttgcttgtttttgttcttttttttattttttgtttcttactGCTTTCTTATGTTTGCAGACGGTGAGTTCAATTTCATCACTCCTGAGTTGTGGGCTTTTGAATTGTGAAATGTGGGGTCAATCTGAATGCCTTTTGAAGTTGAATGATAGGTTAGCCATGTAAGGAGGGGATCGGGATGGTGTCACATGCATGTAACTTGGCAGTAGTTTGTTTTCTTGTTTAGCCTCAAATTAGATCTGTTTatctatttgttgttgttgtttttgttagtcAAAACAACAATAttcaactttttgatttatttttctgtgtgTATTGGCAGTTAATGCAAGGCCTGATGTCTGTAAAGTGTTAGATTTGCAAAGCGAATGGAGATCTATATCACTCTGCAAGTCTATTGTGAGATTTGGATTATGATCTAGAAAAACAGGGCaatcaaataaatattgaatattgtATTATCATCTT
>TCONS_00016830
CGCCGCCATTGCGGGTCTGAGTGAGTCCCATCCGTGCAGAGAGGGAAGAAAAAACATCAACCATCTGGCGGATTGGCTTGACACGACGAAAACGCGACACTTGCATTCTCCGCGTATTAAAAGCAACATTCCTACATTTGAGCTGTTTTGAATCGGGCTGTCCGCGGAGAGGAGGTCGTCGCTCGCTAAAGCTAGGCAGAATTTTTGCGAGGAGTCCGGCCGGGAGGATTGAGAACACAAAGCCCAAACCATGGCTCAGATCCTGCCTATCCGCTTCCAGGAGCACCTGCAGCTCCAGAACCTGGGCATAAACCCAGCGAACATTGGGTTTAGCACCCTCACCATGGAGTCAGACAAGTTCATCTGTATCCGGGAGAAGGTGGGCGAGCAGGCCCAGGTGGTGATCATTGACATGAGTGATCCCAATACACCCATCCGCAGGCCCATCTCTGCAGATAGCGCCATCATGAACCCGGCCAGCAAAGTCATTGCACTTAAAGCGGCAAAAACCCTTCAGATTTTCAACATCGAAATGAAGAGCAAGATGAAGGCCCACACCATGACCGAGGACGTTTCATTTTGGAAGTGGATCTCGCTCAATACCATAGCACTTGTTACAGACAACGCGGTCTATCACTGGAGTATGGAAGGAGACTCGCAACCCATCAAAGTCTTTGACCGACATTCCAGTTTAGCGGGCTGTCAAATTATTAACTACCGCACTGACGCCAAACAGAAATGGCTGCTTCTGATCGGAATTTCAGCACAGCAAAACCGTGTTGTGGGCGCAATGCAACTTTACTCGGTGGACAGAAAGGTGTCACAGCCGATCGAAGGCCATGCTGCTGGATTTGCTCAGTTTAAAATGGAGGGAAATGCTGAGGAATCCACACTTTTCTGCTTTGCTGTTCGGGGGCAAGCAGGAGGAAAGTTGCACATTATTGAGGTTGGAACACCTCCAACAGGGAATCAAGCTTTTCCAAAGAAAGCAGTCGATGTGTTTTTCCCTCCAGAGGCCCAGAATGATTTCCCAGTTGCCATGCAGATAAGCTCTAAACACGATGTTGTGTTTCTCATCACCAAATATGGCTACATCCACCTGTATGACCTTGAGACGGGCACCTGCATCTACATGAACAGGATCAGCGGAGAGACCATATTTGTCACAGCCCCTCACGAAGCCACATCTGGAATCATTGGCGTGAACCGCAAGGGACAGGTTCTGTCTGTGTGCGTGGAGGAAGAAAACATCATCCCTTATATCACTAATGTACTGCAGAACCCAGATCTGGCCCTCAGGATGGCTGTCCGCAACAACCTGGCAGGTGCAGAGGAGCTCTTTGCTCGCAAATTCAACAACCTCTTTGCTGGTGGAAACTACTCTGAAGCTGCCAAAGTGGCTGCCAATGCACCAAAGGGCATCCTGCGCACCCCAGACACCATCCGTCGGTTCCAGAGTGTTCCTGCACAGCCCGGTCAGACTTCACCCCTGCTGCAGTACTTCGGGATTCTGCTGGATCAGGGCCAGCTGAACAAGTTTGAGTCATTGGAACTTTGCAGGCCCGTCCTGCAGCAGGGCCGCAAGCAGCTCCTGGAGAAATGGCTGAAAGAAGATAAGttGGAGTGTTCTGAAGAGTTGGGGGATCTGGTGAAGTCTGTGGATCCGACTCTTGCTCTTAGTGTTTATCTGAGAGCCAACGTTCCAAACAAAGTCATCCAGTGTTTTGCAGAAACCGGGCAGTTCCAGAAAATTGTACTGTATGCAAAGAAGGTTGGCTACACTCCAGACTGGATCTTCCTGTTGAGGAACGTCATGCGGATCAGTCCAGAACAAGGCCTGCAGTTCTCCCAAATGCTCGTTCAAGATGAGGAACCTCTGGCTGACATTACTCAGATCGTGGACGTGTTTATGGAGTATAATCTGATCCAGCAGTGCACTTCTTTCCTACTGGATGCCCTGAAGAACAACCGGCCCACCGAGGGTCCTTTGCAGACTCGTCTGTTGGAGATGAACCTGATGCATGCTCCACAGgtggcAGATGCCATCCTGGGCAATCAGATGTTCACTCACTATGATCGGGCTCATGTGGCACAGCTGTGTGAAAAGGCTGGTCTTCTTCAGAGGGCTCTGGAGCACTATACTGACCTTTATGACATCAAACGAGCGGTGGTCCACACACACCTGCTCAACCCAGAGTGGCTGGTGAATTTCTTTGGCTCTCTCTCGGTTGAAGACTCTATGGAGTGTTTGAGAGCCATGCTGTCTGCCAACATACGGCAGAACCTGCAGATCTGTGTCCAGGTGGCCTCCAAGTATCACGAGCAGCTCTCCACACAGTCCCTCACAGAGCTCTTCGAGTCCTTCAAGAGCTTTGAGGGTCTGTTTTACTTCCTGGGCTCCATTGTGAACTTTAGCCAGGATCCAGAGGTTCACTTTAAATACATTCAGGCTGCCTGTAAGACTGGTCAAATCAAAGAGGTGGAGAGAATCTGCAGGGAGAGCAACTGTTATGATCCTGAGCGAGTGAAGAACTTCCTCAAGGAAGCAAAACTGACTGACCAGCTGCCCCTCATCATTGTGTGTGACCGCTTTGATTTTGTCCATGACCTTGTGCTCTACTTGTACCGCAACAACCTCCAGAAGTACATTGAGATTTATGTTCAGAAGGTCAACCCCAGCCGTTTGCCTGTGGTGATTGGAGGGCTACTGGATGTGGATTGCTCTGAGGACGTCATTAAGAACCTCATTCTGGTGGTCAGAGGACAGTTCTCCACTGATGAGCTTGTGGCGGAGGTGGAGAAAAGAAACAGACTGAAGCTGCTTCTGCCATGGCTGGAGGCCCGTATCCACGAGGGCTGTGAGGAACCTGCCACCCATAATGCCCTGGCTAAGATCTACATTGACAGCAACAACAACCCAGAGCGCTTCCTCCGTGAGAACCCCTACTACGATAGCCGCGTTGTGGGCAAGTACTGCGAGAAGAGGGACCCCCATCTGGCCTGTGTGGCTTATGAAAGGGGACAGTGTGACCAAGAGCTCATCCATGTTTGCAATGAGAACTCACTCTTCAAGAGTCTGTCCCGATACCTTGTGCGTCGTAAAGACCCCGAGCTGTGGGCTAGTGTGCTTCTGGAAGTCAACCCTTACAGGAGACCCCTTATCGACCAGGTTGTGCAGACTGCTCTTTCTGAGACTCAGGATCCTGAGGAAGTTTCTGTTACTGTCAAAGCTTTCATGACTGCTGACCTGCCTAATGAACTCATCGAGCTACTGGAGAAGATTGTCCTGGACAACTCCGTTTTTAGTGAACACAGGAATCTGCAGAACCTCCTCATCCTGACAGCCATCAAAGCTGACCGCACTCGTGTCATGGAGTACATCAACCGCCTCGACAACTACGATGCCCCTGACATCGCTAACATCGCCATTAGCAATGAGCTCTTCGAGGAGGCTTTTGCCATCTTCAGGAAGTTTGATGTAAACACATCTGCAGTGCAGGTTCTCATCGAGCACATTGGGAATCTGGACCGGGCTTATGAGTTTGCCGAGCGCTGCAATGAGCCAGCTGTGTGGAGTCAGTTGGCTAAAGCACAACTGCAGAAGGGGCTGGTGAAAGAGGCTATTGACTCTTACATCAAAGCTGATGACCCTTCAGCCTACATGGAAGTGGGACAAGCTGCAGCCCAAAGCGGAAACTGGGAGGATTTGGTCAAGTTTTTGCAGATGGCTCGTAAGAAGGCCCGTGAATCATATGTGGAGACTGAGCTGATCTTTGCCCTGGCCAAGACTAACCGTCTAGCTGAACTGGAGGAGTTTATCAACGGGCCAAACAACGCACACATTCAACAAGTTGGTGACCGATGCTATGATGAGAAGATGTACGAGGCAGCTAAACTACTTTATAACAATGTATCCAACTTTGGTCGTCTGGCCTCCACTCTAGTGCATCTTGGGGAATATCAGGCAGCTGTCGATGGGGCCCGTAAAGCCAACAGCACACGGACCTGGAAAGAGGTTTGCTTTGCCTGTGTTGATGGGAAGGAGTTTCGCCTGGCTCAGATGTGTGGATTACATATTGTCGTTCATGCTGATGAACTTGAGGAGCTCATCAACTATTACCAGGACCGTGGCTATTTCGAGGAGCTGATCACCATGCTGGAGGCGGCTCTGGGCTTGGAGCGCGCTCATATGGGCATGTTCACAGAACTGGCCATCCTCTACTCCAAATTTAAGCCACAGAAGATGAGGGAGCACCTGGAGCTCTTCTGGTCCAGAGTCAACATTCCCAAGGTTTTAAGGGCAGCAGAACAGGCTCATCTGTGGGGGGAGCTAGTCTTCCTGTATGATAAATATGAGGAGTACGACAACGCCATCATCACCATGATGAACCATCCTGCAGATGCCTGGAAAGAGAGCCAGTTTAAAGACATCATAACTAAGGTGGCTAATGTTGAGCTGTATTACAGAGCCGTCCAGTTCTACCTGGAGTTCAAACCGCTGTTACTGAATGACCTGCTGATCGTATTGTCTCCTCGTCTTGACCACACTCGTGCTGTCAACTTCTTCAGCAAGgtcAAGCAATTGCCATTGGTGAAACCATACCTGAGATCAGTACAGAACCACAACAACAAGTCTGTAAATGAGGCACTAAATAATCTCTTCATCACAGAGGAGGATTTTCAGGCTCTGCGCACATCCATCGATGCCTACGACAACTTCGACAACATATCTCTGGCTCAGAGCCTGGAGAAGCACGAGCTCATCGAGTTCAGGCGAATCGCTGCATACCTGTTCAAAGGCAACAACCGCTGGAAGCAGAGTGTGGAGCTCTGCAAGAAAGACAAACTTTACAAGGATGCTATGCAGTACGCTTCAGAGTCGAAGGACACAGAGCTGGCAGAGGAGCTGCTGCAGTGGTTCTTGGAAGATGACAAGAAAGAGTGTTTTGCCGCCTGCCTGTTCACCTGCTACGACTTGCTGAGGCCTGACGTGGTGCTGGAGACGGCGTGGAGGCACAACCTCATGGACTTTTCCATGCCCTACTTCATTCAGGTCATGAGGGAGTACCTCTCCAAGGTTGATAAGTTGGATGCTTCTGAGTCTTTGAGGAAAGAGGAAGAGCAGCTCACGGAGGCACAACCCATTGTCTATGgCACACCCCAGCTGATGCTCACTGCAGGTCCCAATGTGGCAGTTCCCCCACAGCAGCCTTACGGCTATGGCTACCCCACAGCGACCGGCTACACCCAACCCGCACAGCCCGGCTTCGGCTATGGCATGTAAAGCCCTCCTGCCCACAGCTGTCCATCCATCTCTCCTTAAGTTCCTCACAAAGCTTATCGTGGTCTACTCACAAGGTtatataaagtaaaacaaacaaacaaacaaaaaaaagttacatgttttaaattattttcctgCAATGAAggacttcatttttatttgtgttgtcaAAGAAAAAAATCGGACCACACTTTTGTTATTTCACATTCCATATTTAAGGCTACTTATATCactagttcttttttttttgtgagctgATTTTTTTTAAGGGGGCATGGGTTGTGTATGTAAGTGGAGTGTTGAGAAGAGCAATTAACCTTAAAATATGTTGTGAAGCATCTGATTTGCACTCTGTCGTGAGAGGAAACTAATGTAGAATCTCTTAATTTTGATGTATTGTATGTGAAGAGCTTACACTGTCAGTCTGTTTAATGCATTTCATTATTGTATATTCTGGAAAAAAAAGGTTAAAGACGATATTTGAACATGAACGTATGCATCCATGGGTACATTTAGCTAACACTAAGTAATAATCTGATATTCTACACAAATATGTAGCTGTATGGGAATTTTAAGCGCATACAGATATGAATATAGTAAACGATTTTAATCCCTTAGCATAAACAGGTTTCCCCCCCGATCGACCTCGTAGTTGTTAACATCTCATCATCCACTCCATGTGTAACAGGTGACCTTTCCTTGTATTGAATACAGTGCTCTTTCTTGTGTGAATCCATTTCCATAAATGAGCAAGGGATACATTGATTCTTCTGACTTCTGTGTTTACTCATCCGATACTTTGtattaaggtgtgtgtgtgtgtgtgagtgccaGGTGTCGTGCTGTTCTAGCTCACTATTCGGAGTGTACAGAAGAATGAATACACAGAATGGATACCGATGCTTGTCCACCTGTAAGATTTTGTGTGTGATCTGCAGaatctgaaaaataataataataattatgaggGGAGGGTGAGGAAGAAATACACAGGATTGTAATTTTTTTGGTGGCTTGATTGTAAATTGGCAAAGATTAAAATGAAACTCATCCATTCTCCATCAAA
>TCONS_00016831
ATATGAGGAGTACGACAACGCCATCATCACCATGATGAACCATCCTGCAGATGCCTGGAAAGAGAGCCAGTTTAAAGACATCATAACTAAGGTGGCTAATGTTGAGCTGTATTACAGAGCCGTCCAGTTCTACCTGGAGTTCAAACCGCTGTTACTGAATGACCTGCTGATCGTATTGTCTCCTCGTCTTGACCACACTCGTGCTGTCAACTTCTTCAGCAAGgtcAAGCAATTGCCATTGGTGAAACCATACCTGAGATCAGTACAGAACCACAACAACAAGTCTGTAAATGAGGCACTAAATAATCTCTTCATCACAGAGGAGGATTTTCAGGCTCTGCGCACATCCATCGATGCCTACGACAACTTCGACAACATATCTCTGGCTCAGAGCCTGGAGAAGCACGAGCTCATCGAGTTCAGGCGAATCGCTGCATACCTGTTCAAAGGCAACAACCGCTGGAAGCAGAGTGTGGAGCTCTGCAAGAAAGACAAACTTTACAAGGATGCTATGCAGTACGCTTCAGAGTCGAAGGACACAGAGCTGGCAGAGGAGCTGCTGCAGTGGTTCTTGGAAGATGACAAGAAAGAGTGTTTTGCCGCCTGCCTGTTCACCTGCTACGACTTGCTGAGGCCTGACGTGGTGCTGGAGACGGCGTGGAGGCACAACCTCATGGACTTTTCCATGCCCTACTTCATTCAGGTCATGAGGGAGTACCTCTCCAAGGTTGATGCAATTAAGGAAAAGGTTGATAAGTTGGATGCTTCTGAGTCTTTGAGGAAAGAGGAAGAGCAGCTCACGGAGGCACAACCCATTGTCTATGgCACACCCCAGCTGATGCTCACTGCAGGTCCCAATGTGGCAGTTCCCCCACAGCAGCCTTACGGCTATGGCTACCCCACAGCGACCGGCTACACCCAACCCGCACAGCCCGGCTTCGGCTATGGCATGTAAAGCCCTCCTGCCCACAGCTGTCCATCCATCTCTCCTTAAGTTCCTCACAAAGCTTATCGTGGTCTACTCACAAGGTtatataaagtaaaacaaacaaacaaacaaaaaaaagttacatgttttaaattattttcctgCAATGAAggacttcatttttatttgtgttgtcaAAGAAAAAAATCGGACCACACTTTTGTTATTTCACATTCCATATTTAAGGCTACTTATATCactagttcttttttttttgtgagctgATTTTTTTTAAGGGGGCATGGGTTGTGTATGTAAGTGGAGTGTTGAGAAGAGCAATTAACCTTAAAATATGTTGTGAAGCATCTGATTTGCACTCT

Function

symbol description
cltcb Predicted to enable clathrin light chain binding activity and structural molecule activity. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in clathrin-coated pit and cytoplasmic vesicle. Predicted to be part of clathrin coat of coated pit; clathrin coat of trans-Golgi network vesicle; and clathrin complex. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 56. Orthologous to human CLTC (clathrin heavy chain).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030130 clathrin coat of trans-Golgi network vesicle cellular_component
GO:0030132 clathrin coat of coated pit cellular_component
GO:0005905 clathrin-coated pit cellular_component
GO:0071439 clathrin complex cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0032051 clathrin light chain binding molecular_function
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050227-12 Predicted to enable clathrin light chain binding activity and structural molecule activity. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in clathrin-coated pit and cytoplasmic vesicle. Predicted to be part of clathrin coat of coated pit; clathrin coat of trans-Golgi network vesicle; and clathrin complex. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 56. Orthologous to human CLTC (clathrin heavy chain).

Ensembl:

ensembl_id ENSDARG00000090716

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016829 False 1347 mRNA 0.41 2 17285989 17294009
TCONS_00016830 False 6350 mRNA 0.48 32 17286004 17340198
TCONS_00016831 True 1308 mRNA 0.46 8 17321218 17339485

Neighbor

gene id symbol gene type direction distance location
XLOC_008408 dhx40 coding upstream 801 17258246 ~ 17285188 (+)
XLOC_008407 si:ch73-223p23.2 coding upstream 30682 17251191 ~ 17255307 (+)
XLOC_008406 relb coding upstream 160772 17100412 ~ 17125217 (+)
XLOC_008405 clptm1 coding upstream 190334 17074185 ~ 17095655 (+)
XLOC_008404 plin2 coding upstream 237167 17030473 ~ 17048822 (+)
XLOC_008410 vmp1 coding downstream 3121 17343319 ~ 17373352 (+)
XLOC_008411 dre-mir-21-2 coding downstream 33591 17373789 ~ 17373915 (+)
XLOC_008412 CR848791.3 coding downstream 36169 17376367 ~ 17378063 (+)
XLOC_008413 rps6kb1b coding downstream 66722 17406920 ~ 17424590 (+)
XLOC_008414 snx19b coding downstream 101536 17441734 ~ 17489726 (+)
XLOC_008463 BX663520.1 misc downstream 3911993 21252191 ~ 21252282 (+)
XLOC_008403 BX571762.2 non-coding upstream 365002 16914731 ~ 16920987 (+)
XLOC_008400 BX649487.2 non-coding upstream 456113 16829762 ~ 16829876 (+)
XLOC_008398 CR847990.1 non-coding upstream 766906 16518967 ~ 16519083 (+)
XLOC_008394 BX511308.1 non-coding upstream 1240485 16035869 ~ 16045504 (+)
XLOC_008393 NA non-coding upstream 1267200 15987054 ~ 16018789 (+)
XLOC_008419 NA non-coding downstream 546000 17886198 ~ 17936128 (+)
XLOC_008420 CR385077.2 non-coding downstream 746504 18086702 ~ 18086816 (+)
XLOC_008422 NA non-coding downstream 1045392 18385590 ~ 18401208 (+)

Expression


Co-expression Network