CI01000026_15217144_15334733


Basic Information

Item Value
gene id CI01000026_15217144_15334733
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 15216946 ~ 15335175 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_15217144_15334733.mRNA
AGTGATTGCAGGAAGATCTTGAGTGTGGTGATGCCATGGCAGCTCTCATTGTTCTGTATCTCCGAAGAAAAGACAGGAAGCAGCTGATGGGGCTCTTTGGGTGCTTTTGTGGCCATTGAGTCTAAACTCATTGAGTCCCTGGCTCTGTAAATCAACCTCAGGTGAGCAGACAGTAATGTGACCTGAAGGAGAGATCAATGCATCTCCAAGCTTTGGCACAATGGATCTCGCTCTTTCAACAGACGCTTACTGCTGCTTTTGGCCTTTAGTGACCAACATCTCTTTCCACTCTTGTGCTTAACCTCTCTGACCATCAGTGCTGATGATGGGTTAAATGAGAATGTAAGCCAATGTACATACCAGGCCTCCATATCACCTTTCTGAGCAATGAAGTGAACCAAAGATGAAGTGAAGGAATGATTCTAGAAGCTCTGCATGCTCAATGAGCTTTCCAGTAGATGCTATGATTCTTCTTCAGCGAGCAGAGGGGCAGCTCAGAGGGGCAGGAAAGTGTCAGCAATTCATTGTCCTGCCAAAGCCTGTCTGGCCCTTGGGCTCTGCTTGCTGCTTATTGGTCTATACCAAGGGGATAGTGCCAAAGGTCCTGTGTAATATAGAAAGGGTCTGGCGAACCTCCCTTCCTCACTTGGCCTCTGCAGCAGAAAGGGCTAAAAGGCTAAAATGGTTCAGTGTGGCTTTGGCCTATTCAGATTGCTCTGTTTTCTACAGAAAAGGCCCTGGAGCCATTGATGTCAGTTATGGAGATCGAGAAAACAGTGATTTTTCTCCGACAAAGAAAAGCAGTGGAACTGGCTCAGTGGGGTATTTTGTGTCTGAATTCTATGTGGACAGAATGAAATCCCTGTGGTCCGTGCTTGCTTCCAAAACATATGAGAATCATCCCAGGAAATTCAGATGTCTGGGCGATGCTCCAGTAGCCCGTCAGCAGAACGGCAGAAGGCTAATGAATATTTTTTGGCAGATTAGCAGTTTAATGAAAACAGACTGTGTTTGGAGAAAGTGCTCTGCTGCTATCACTCTATCAAAGGCACTGTCTTGGAGGGAGCCAAATCACTCTGTGCTCCCATTAGACAAGGCAAAGAGAAGTGTAACCGAGTCAGTGATTCCAGTCACACGCGCACTGACTGTGGTGCTACCCAGGGCAAGAATTACACTAATAATCACAAATCAAACTTCAATCCTGTTCGACAAGTGCACCTGTTGGCCACAATTTCAGATAATGCTCTGTGCACATGGTTCAATGCGATGCATGTTCCTCTATCAGTCTGTACTTGAAAGTACAAAAACCTATGTTATTTCAGAACAATCCGTTCAGTCTCATATGGTGTTTCTACTTGGCAGATGCAATATTACGTTAAAAAGTCTGGGACAACCTCCAGGTGACAATACGATACATACAATACTTTACACACCGCAACCTCCATTTGCTAATACAAATGATGTGACAGCATCCCATCTTGAAATTACTATCACTACCCCAATTCACAGTCTGAGTCATCGTGTCGTGCTGTTCCGGTTCCAGTCTCGTTTGGATTACTCACCTGGTGTTCTTCTTTCACTCCGGGTACTCTACACACGGTCTTCTCTCTTCTGTTCAGGATTGCCCATCGAAGTCCCTGTGTCACCACTCTCCTGCTGGCTGCAACGTGTTGGACTCTACTGTTTTCTCAATAAAGAGATTTTTACTTGCAACTTGCATCCGCGGAGAGTCAGCGCCATGGGGGCAGGTGTGGGGACAGAAAAGATTGATGGATTTAAAAAGGAAAGAGGAGGAATGGGGCCTGATATTTGCAATTGTTTTGTTCCACCCAGCAATGGCAAGGCTGTCATAGCCATTGCCTGCGGTGTACTAGCAGTTGTCATAGCATACTGTGAGTGCGCTGAGAACAAACCATGTTTCCATATTATCATGACCATATCCAAGTCTATGACCATCCCAGGAGTCTCAGAACAGGAGGCAGCGCTAGAGGCCATTTTTCCCACAGCAGTCAATTCTCCAATGAATCCAGAGATGAAGCCTTCACCTTCTTTCAAGTAGGAAACCTTTTTTTTTTTTTTTTTTTTTTTCTAATATAAAACTCTGTCTTGTTTCTTATTTGGGTGGCCCTTAGGACAGGGACCTTTGTTTTGACTTTTCATATTGTGTTTTTATTTTATTTTCAGTTGTGTGTGAGTCACACTGTCACATGAAGTGCAGAGAATGCTGATAAATTATTTAAGTAGGATTATTAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_15217144_15334733.mRNA True 2257 mRNA 0.44 13 15216946 15335175

Neighbor

gene id symbol gene type direction distance location
CI01000026_15189520_15194928 NA coding downstream 21975 15189321 ~ 15194971 (-)
CI01000026_15050306_15051326 NA coding downstream 163660 15049040 ~ 15053286 (-)
CI01000026_14914431_14918358 VSTM2B coding downstream 297751 14913882 ~ 14919195 (-)
CI01000026_14904913_14906047 NA coding downstream 310852 14904746 ~ 14906094 (-)
CI01000026_14867079_14869821 FAM96B.S, FA96B, FAM96B coding downstream 345627 14866594 ~ 14871319 (-)
CI01000026_15410940_15426472 SHCBP1 coding upstream 75625 15410800 ~ 15426472 (-)
CI01000026_15444272_15445552 NA coding upstream 108877 15444052 ~ 15445552 (-)
CI01000026_15457228_15461956 NA coding upstream 122023 15457198 ~ 15461956 (-)
CI01000026_15604078_15614242 NA coding upstream 268789 15603964 ~ 15614655 (-)
CI01000026_15617263_15620665 NA coding upstream 281745 15616920 ~ 15620947 (-)
G136377 NA non-coding downstream 139107 15076811 ~ 15077839 (-)
G136344 NA non-coding downstream 156772 15059950 ~ 15060174 (-)
G136214 NA non-coding downstream 364846 14851767 ~ 14852100 (-)
G136170 NA non-coding downstream 550369 14666345 ~ 14666577 (-)
G136156 NA non-coding downstream 578966 14637520 ~ 14637980 (-)
G136609 NA non-coding upstream 8035 15343210 ~ 15343413 (-)
G136845 NA non-coding upstream 72337 15407512 ~ 15407792 (-)
G136846 NA non-coding upstream 74833 15410008 ~ 15410383 (-)
G136860 NA non-coding upstream 101569 15436744 ~ 15437063 (-)
G136865 NA non-coding upstream 139329 15474504 ~ 15474708 (-)
G136110 NA other downstream 661510 14554917 ~ 14555436 (-)
G133802 NA other downstream 3909765 11301915 ~ 11307181 (-)
G133790 NA other downstream 4379341 10834015 ~ 10859589 (-)
CI01000026_10788054_10788652 CD59 other downstream 4426792 10787339 ~ 10789709 (-)
CI01000026_10347872_10351783 CEBPA other downstream 4867989 10347746 ~ 10351783 (-)
CI01000026_16756776_16760261 RBPMS2A, RBPMS2B, RBPMS2 other upstream 1421554 16756729 ~ 16761341 (-)
G137667 NA other upstream 1471189 16806364 ~ 16808372 (-)
G137914 NA other upstream 1648076 16983251 ~ 16984352 (-)
G137967 NA other upstream 1733173 17068348 ~ 17069433 (-)

Expression


Co-expression Network