CI01000026_16645459_16698069 (MTSS1L)


Basic Information

Item Value
gene id CI01000026_16645459_16698069
gene name MTSS1L
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 16645264 ~ 16698069 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_16645459_16698069.mRNA
TGTTCATATCCTGTCTGGGAAGACTTCAGTGCCAAGGCCACCAAGCTGCACTCTCAACTCCGAACCACCGTGCTAGCAGCAGTGGCCTTTCTGGATGCCTTTCAGAAGGTGGCAGACATGGCAACCAACACAAGAGTGCTTTGATGGAGAGCCTGATCACTCCTCTACAGGACCGCATTGAAGACTGGAAGAAGACAGCCAATCAACTGGACAAGGACCATGCCAAAGAGTACAAACGGTCTCGTCATGAAATAAAGAAAAAATCTTCGGACACCATGAAATTACAGAAAAAAGCCAAGAAAGGCCGGGGGGACCTTCAGCCTCAGCTGGACAGTGCCATGCAGGATGTGAATGACATGTACCTGCTGATGGAGGAGACAGAGAAGCAGGCGGTGCGGCGTGCTCTAGTGGAGGAGAGAGGACGCTTCTGTACCTTCATCAGCTTCCTGCAGCCTGTAGTGAATGGAGAGATTGCCATGTTGGGAGAGATCACTCATCTCCAGGCCATTATTGATGACCTCACCGTGTTAACCTCAGACCCCCACAAACTGCCCCCAGCCAGCGAGCAGGTAATAAAAGACCTTAAGGGTTCTGATTACTCTTGGTCCTACCAGACTCCCCCCTCCTCTCCCAGCAGCTCCGGCTCCAGGAAAAGCAGCATGTGCAGCAGTGTAAACAGCGCCCATAGTAGTGCCTCTCGATCCTCTGGTGGCTCTCAGACTCACTCACCCAGTTCGTCCTGTCGCTACCGCAGCCTGGCCCAACCGCTAACAACCGCTGCACACCGCCTCAGCAGCGTCTCCTCCCACGACTCTGGCTTCATCTCCCAGGACGCCAACGTCTACTCCAAACCCCCATCACCCATGCCCTCCGATATAACCAGTCAGAAGTCATCAAGTTCAGCGTCCTCAGAAGCATCTGAGACCTGCCAGTCAGTTAGTGAGTGTAGCTCTCCAACCACATTTGGCTCGTCCTTCGCTACCTTCCGCCCTGCTCTCTCTCACACTGGCTCCATCAGGCCTTTCTCTGTCATACTTCCTGCGTCCCCACCCTATAACCGCTCCCCTGGATCCAACACACCCTCTCCCACATCCAAGGTTCCTTGCTGGAAGGACTGGTCCAAGGTAGGTTCCAGTGAGCAACCGCTGGCCAGCACGCTTCAGAGGAGGAAGGAGCCTCTTGATAGGCTGAGGGAGGCAGAAACCTCTCCTCAGTCACAGGGGTATTCTGGGATGCATCCAGAAGACCCCCAGAGGCCAAGGATGACCCCGGCTACTATAGCTGCCAAGCATGGTGAGGAGGTCTCTCCAGCTGCTAGTGACCTAGCTATGGTGCTGACACGAGGCCTCAGCATGGAGCAGCAGAAGAGCAGCCGAGACTCCCTTCAGTACTCTAGTGGATACAGCACTCAAACAACCACTCCCTCCTGCTCAGAAGATACCATCCCCTCACAGGGCTCCGATTACGATGGTTACTCAGTGAATGGAGACACTGAGGCTGACGGTCAGGCTGAATTCGATAAATCTTCCACAATTCCCCGCCACAGTAATATTGCCCAGAACTACCGCCGCATGATACAGACTAAGCGTCCCGCTAGCACAGCAGGCCTGCCCAGCGGAGTGGGCGCTCTGGGTGGACCACCGGGCGGAGGGGGCGGCACGGCCACCATCCGCCGAACACCATCTACAAAGCCTGGGGTGAGGCGCACCCTCTCCAACGCTGGCCCTATTCCTATACGCCCACCCATCGTGCCAGTCAAGACCCCCACTGTGCCTGACTCACCTGGCGGGAACGCCGGCCCTCCCGCCCGAGTGGGCAGCGAAGAATGTGTCTTTTATGTGCCGGATGACGCCTCCCCAGGAGCGCTGGAGTACGTAAAGGCCTCTCCAAAGCGGCTGAGCCTGCCTAACACAGCCTGGGGTTCAGGGGGCGTGGGCGGCTTAGAGATGAGTGTGTACGGCCAACCGGGCGAAGAAGATCATCTGCTGGCTGCCAATCGCCACAGTCTGGTGGAGAAGATCGGGGAGCTGGTGGCCAGCGCTCACGCCTTAGGCGAGGGCCAGTTCCCTTTCCCCTCGCTTCCGAACCAGCCCCCGCCGGGCCCTGAGGCCGAGCCAGTGCCCCAGGAGGGTGAGGACATGCTGAGGTCTATTCGTCGAGGGAGGGAAGAAAGGGATGATAAAGGAGGTGGAGAGAATGAACTCTGGGAAGAAACTCATCCAGTTGTTTATGATAAAAGCATTCCACTGCCTGTTATAGATGATATAGGAGTACATACCTATGACACGAAAGGTCGCTGGTTACCCCGGTTCACCCGACGTGAAGAAAAACAATGCTCTGTGATGATACTGGATGTGGAAGTGATATGTAGGAGTATGAACGAGTGTGCCGATCTCTCGCCGAAAATAGTGCCGTTCTGGAACTCCAAGGCCGTATTGAGAGCAGGCCGGAATGAAAGAACAGGGTTACGGCAATTCAAAGCCCACACTGCCATCCGATGAAAGAGCAGGTCAGAACTTTGTATATATTCATATACATATATATACATGCATATAGATGGTGAACAGTACTAGTTGCTTCACTAAAAACAAATGTCCCACATAAATGTTGTCTTGCAATGGGGTGGCTGAAGAATCAAAGACAAGTGCATTGATTTGGCAGCAATATAGTGAAGTTTGCTGGGCGAAGAGAAAAAA

Function

GO: NA

KEGG:

id description
K20128 MTSS1; metastasis suppressor protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_16645459_16698069.mRNA False 2696 mRNA 0.54 15 16645264 16698069

Neighbor

gene id symbol gene type direction distance location
CI01000026_16553812_16554906 NA coding downstream 89381 16553382 ~ 16555883 (-)
CI01000026_16432592_16456842 NA coding downstream 188422 16432527 ~ 16456842 (-)
CI01000026_16297047_16419596 NA coding downstream 225525 16296642 ~ 16419739 (-)
CI01000026_15930136_15933539 TSHZ3B, TSHZ3 coding downstream 711725 15929803 ~ 15933539 (-)
CI01000026_15780006_15782114 NA coding downstream 862989 15779650 ~ 15782275 (-)
CI01000026_16739750_16751270 CPEB1B coding upstream 41179 16739248 ~ 16751465 (-)
CI01000026_16756776_16760261 RBPMS2A, RBPMS2B, RBPMS2 coding upstream 58707 16756729 ~ 16761341 (-)
CI01000026_16817010_16832208 SIN3AB coding upstream 118226 16816295 ~ 16832208 (-)
CI01000026_16959659_16962519 CDKN1CA coding upstream 261204 16959273 ~ 16963221 (-)
CI01000026_16988458_16994714 TRAF6 coding upstream 289747 16987816 ~ 16995104 (-)
G137751 NA non-coding downstream 10856 16634181 ~ 16634408 (-)
G137739 NA non-coding downstream 20136 16624848 ~ 16625128 (-)
G137723 NA non-coding downstream 36564 16608495 ~ 16608700 (-)
G137715 NA non-coding downstream 46762 16598264 ~ 16598502 (-)
G137682 NA non-coding downstream 298923 16337879 ~ 16346341 (-)
G137678 NA non-coding upstream 85335 16783404 ~ 16784247 (-)
G137674 NA non-coding upstream 86256 16784325 ~ 16787020 (-)
G137771 NA non-coding upstream 94350 16792419 ~ 16792637 (-)
G136110 NA other downstream 2089828 14554917 ~ 14555436 (-)
G133802 NA other downstream 5338083 11301915 ~ 11307181 (-)
G133790 NA other downstream 5807659 10834015 ~ 10859589 (-)
CI01000026_10788054_10788652 CD59 other downstream 5855110 10787339 ~ 10789709 (-)
CI01000026_10347872_10351783 CEBPA other downstream 6296307 10347746 ~ 10351783 (-)
G137667 NA other upstream 108295 16806364 ~ 16808372 (-)
G137914 NA other upstream 285182 16983251 ~ 16984352 (-)
G137967 NA other upstream 370279 17068348 ~ 17069433 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035048 mtss1lb coding NC_007118.7 CM002891.2 48041790 ~ 48173440 (-)
bowfin (Amia calva) AMCG00020429 LOC106562044,LOC106587150 coding CM030127.1 CM030127.1 18707806 ~ 18727969 (+)