XLOC_008412 (CR848791.3)


Basic Information

Item Value
gene id XLOC_008412
gene name CR848791.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17376367 ~ 17378063 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016836
CCCAGCCACCGAACTAAGAGGTAGCTGGTTATTTAGCACCTCTACCGTCTGAGTTGGCTGCTTCTGTGACAACAGATCTGGCTCAAAGGAAGAGGACGCAGTAGAATAAAATCCAGCAAAATCCAGAATATGAACAACTGATACCTCATATGAAAGACCTGCCAAGCCATCGGGAAGAGAATTATATGCAAAAGGCCGATTGCTTGGACGAGGCggattcggctctgtgtttgctgggacccgcaggtctgatggacttCCAGTCACCATCAAGTATGTCTCTAAAAACAGAACACTCTGGTTGGAAGTTGTGAATTCATAAGATTATTAGTCTTGAGGTGGCTTTGATGACTCGGGTCAATACAGCTACTCACTGCCCTAATGTCGTGCAGCTCGTAGAGTGGTTTGACCGTCGCACTCGATGCATCTTGATCCTGGAGCGTCCGGTTCCCTCCaggatcagcagtttctgcaaAGACTGGATGAAATACTGGCCAAGAAAGTTCTGGTGCAGCTCATCAGCACGCCAAAACACTGCGAGAGCTGTTGggtcctgcaccgggacgtcacACCAGAGAACCTGCTGACCTAAAGCTGCTGGAGTTCGGCTGTGGAGATCTCCTAAAGCACTCAGCCTTCAGATATTTTCAGGCACTCCTCAGTACGGCCCTGATGAGTGGTTTCAGCAGCATCTGCTGGACCATCTACTGTCTGGTCAGTCGGGGTGACACTCTACTACAACATCCTCTGCGGTTGTTTTTTAGCGTCAGAGCCGCATGCAGGGTCACCTGCTAAAGCAGACTGCACTTCCCTCGAGAGCTGTCTACAGagtgccgtcagGTGATTagctggtgtctcagtgcagcgTTGGCTGATCTCACCCCAGCTTGCATGACATTGAGCACCATCCTTGGTT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097320

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016836 True 916 lncRNA 0.51 6 17376367 17378063

Neighbor

gene id symbol gene type direction distance location
XLOC_008411 dre-mir-21-2 coding upstream 2452 17373789 ~ 17373915 (+)
XLOC_008410 vmp1 coding upstream 3015 17343319 ~ 17373352 (+)
XLOC_008409 cltcb coding upstream 36169 17285989 ~ 17340198 (+)
XLOC_008408 dhx40 coding upstream 91179 17258246 ~ 17285188 (+)
XLOC_008407 si:ch73-223p23.2 coding upstream 121060 17251191 ~ 17255307 (+)
XLOC_008413 rps6kb1b coding downstream 28857 17406920 ~ 17424590 (+)
XLOC_008414 snx19b coding downstream 63671 17441734 ~ 17489726 (+)
XLOC_008415 adamts15b coding downstream 243312 17621375 ~ 17652807 (+)
XLOC_008416 si:ch211-213d14.1 coding downstream 343991 17722054 ~ 17748319 (+)
XLOC_008417 si:ch211-213d14.2 coding downstream 374852 17752915 ~ 17757994 (+)
XLOC_008463 BX663520.1 misc downstream 3874128 21252191 ~ 21252282 (+)
XLOC_008403 BX571762.2 non-coding upstream 455380 16914731 ~ 16920987 (+)
XLOC_008400 BX649487.2 non-coding upstream 546491 16829762 ~ 16829876 (+)
XLOC_008398 CR847990.1 non-coding upstream 857284 16518967 ~ 16519083 (+)
XLOC_008394 BX511308.1 non-coding upstream 1330863 16035869 ~ 16045504 (+)
XLOC_008419 NA non-coding downstream 508135 17886198 ~ 17936128 (+)
XLOC_008420 CR385077.2 non-coding downstream 708639 18086702 ~ 18086816 (+)
XLOC_008422 NA non-coding downstream 1007527 18385590 ~ 18401208 (+)
XLOC_008423 NA non-coding downstream 1410353 18788416 ~ 18792858 (+)
XLOC_008425 NA non-coding downstream 1777827 19155890 ~ 19157908 (+)

Expression


Co-expression Network