CI01000026_16756776_16760261 (RBPMS2A, RBPMS2B, RBPMS2)


Basic Information

Item Value
gene id CI01000026_16756776_16760261
gene name RBPMS2A, RBPMS2B, RBPMS2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 16756729 ~ 16761341 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_16756776_16760261.mRNA
GCCTTTTTGATCCATTCATGAATGCCATCTGTGCATTGGCAGAAAAAGACAATACAAACACATCGCACAACTTCAAAAAATACCACTTTGGATTGTGGTTTCTTGATACGTTGCCTGTTGGGTTTGTAACCTTTGATAGCCGTTCCGGCGCTGAAGCGGCAAAAAATGCATTAAACGGGGTTCGATTTGACCCTGAAAACCCGCAGACCCTCCGGTTAGAGTTTGCTAAGGCCAACACGAAGATGGCAAAGAGTAAGCTGATGGGCACTCCGAATCCCACAAATATCCACCCAGCTCTAGGAGCACACTTCATAGCACGGGACCCATATGACTTGACAGGGGCTACGTTGATCCCAGCGTCTCCAGAGGCCTGGTCTCCTTACCCACTCTATACTCCGGAGCTCAGCCCCGGCCTGCCCCACACGGCTTTCACCTACCCGGCAGCAGCCGCTGCCGCAGCAGCCGCACTTCATGCTCAG
>TU156370
ATTGTTGGATAATACAGCTGACCAGGTTTGCAGTATATTAAAACATGCATGTTTGCACTTGTGCAGCAGACATGGCTTTTTTTTTTTTTTTTGTCAACTGCAAAGTGATCAGTCACATTATGAAAGCTATTTTTATAGCTATAAAAATAACATTTAAAAATTATGTTTTTGATAAGTGACATTGTTCTTTTGGCCATTGATTCTTTCTTTCTTTTCCAGCCTGTTGGGTTTGTAACCTTTGATAGCCGTTCCGGCGCTGAAGCGGCAAAAAATGCATTAAACGGGGTTCGATTTGACCCTGAAAACCCGCAGACCCTCCGGTTAGAGTTTGCTAAGGCCAACACGAAGATGGCAAAGAGTAAGCTGATGGGCACTCCGAATCCCACAAATATCCACCCAGCTCTAGGAGCACACTTCATAGCACGGGACCCATATGACTTGACAGGGGCTACGTTGATCCCAGCGTCTCCAGAGGCCTGGTCTCCTTACCCACTCTATACTCCGGAGCTCAGCCCCGGCCTGCCCCACACGGCTTTCACCTACCCGGCAGCAGCCGCTGCCGCAGCAGCCGCACTTCATGCTCAGGTGAGGCCATCTTTTCCTTTCCTTTTTTTTTTTTTTTTTTTTTTTTA
>TU156380
AACGCCACTCTCGAGCCTGCCCCATCTCACTTGATGACCTAATTGGCGAACAGGTCAACTATGGAACAGGTTTTACCCATGAGCTCTGCTTTCTTTGAAATTTAACATTTAAAACGAGGTAAATGTGAGGTGGCACCGCCATTTCTCTTTTTTTTCTCTTCCCCACACAACGCACTGCACTTCTTTTCACCGAGTCACCTTCGCGTCTTCAGTTCACCTGCCACTTTTGACACGACCTCGGTGTTCCCGCACAAGTTCTGCTGAATCCCGCACGGATCGCCATCAGGATCCAGTCGCACTGTAGGACGCGGAAAAAAAACCCCTAAACTTCTGCCAGTCCTTCTGGGTGTCTCAAGTTTACGCACAAGATGAGTATCAAGTCTGACTCCGAGCCAAACAACAACGTCTCTATTGAAGAGGAGGTGAGAGTTCTGCGTGATTGAGGTGTTGTGAAGAGTAAATCTTTTTATGTCGATGTAAATTGTTTCAAACTTTTGAAGTGTTTACGGTAGTCTTGGCGCATCTCCGCGAAGTTTTTGCTGTGAGGCTAAAGTAAGGAAATAATCACTCAAGAGAATTAAGTGACGGTGGTCTTCATATTCAAAATGAAAGTAATGTAAATTAATGACCACCTATAATTTTTTTTTTTTTTTTTTTTTAATAGAGCGCTGTTGCGTTTCCTTCATGCATGTTTTGGGGAGTTAAAATGCTTTAAAGTTTTTAAAAAATTTTTTTTTTTTTTTTTTCATTTTTGGCAGAGTTCCTAATAGAATTAAAATACGTGTGCTTATTCAATTCCTTGTCTGCAAGCTAAATCTAGTGATTTAGTTTGTCTTAAAATGTACACAGGCGCAAATCACTGAATTGTTTGAAATTGGCTTCAGCGTCACTGAATGATTGGTTTAATAATTTGGAATAATTGTAATGCAGTAGAACCGTTACTGATTCAGCGGTTTCTTCATAAATTACACTTTTAAAATGGCACAGTTTGTTAACGCTAACTGAAATGTATCAGAGGTTTCTTGTTGTTCATTTTCTTTGTATAAATTTAAATGGACACTGTTGATCATATGCATGCAGGCCTTTTTGATCCATTCATGAATGCCATCTGTGCATTGGCAGAAAAAGACAATACAAACACATCGCACAACTTCAAAAAATACCACTTTGGATTGTGGTTTCTTGATACGTTGGTTAGTAAAATACTTGTTGAGAAAAAAAGTCTTGCACCACTTGCAGCTGTTAGAATAGAACTAAATAAACTTGTGTGTGTGTGTGTGTGTGTGTATATATATATATATGTATATGTGTGTGTATATATATATATATATATCTCCATATATATATATATATATCTCCATTAGAATATAAATGCATAGTATTAAAGTGTAAAGATAATGGGTTATGGGGCTGTGGTTGAGGGCCAAGGAATAGTGTTGCGCTGTTGGGGTTGTTGCTGTGGGTCAGAGGAAGGAAGTGCTGTCATGCTGTGCAATGTTGTCCATTGCTGTTCCACTGGCAGTCCATTGTGGCTTTGAACCTCCCACCAAGTCAAAGCGAGTGGATGCACGTTTGTGATTTCTATAGCCATTTATTTGAATGTGGTGATACAAAACACATTTGTCTTCTGAATCTTTATACTGTATACTTTTTCATAGGAGTATTTCCATTGTGCCACAACACCATTCCTGTCTTTTTGTATTTGTGTTCAGCTGATTACAAACCATGAGCTTTTTTATTAAATTCATGCTGACTTTGTGGCATGTGTGTTAACTAGTCATTTTTCCC

Function

symbol description
rbpms2b Enables mRNA binding activity. Acts upstream of or within female sex differentiation; neuron projection morphogenesis; and regulation of retinal ganglion cell axon guidance. Predicted to be located in cytoplasm. Is expressed in several structures, including cardiovascular system; gonad; optic vesicle; retina; and ventral mesoderm. Orthologous to human RBPMS2 (RNA binding protein, mRNA processing factor 2).
rbpms2a Predicted to enable mRNA binding activity. Acts upstream of or within female sex differentiation; neuron projection morphogenesis; and regulation of retinal ganglion cell axon guidance. Predicted to be located in cytoplasm. Is expressed in cardiovascular system; gut; pleuroperitoneal region; retina; and ventral mesoderm. Orthologous to human RBPMS2 (RNA binding protein, mRNA processing factor 2).
rbpms2 Enables mRNA binding activity and protein homodimerization activity. Involved in negative regulation of smooth muscle cell differentiation. Located in cytoplasm.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_16756776_16760261.mRNA False 479 mRNA 0.52 4 16756776 16760261
TU156370 False 632 TUCP 0.45 3 16756729 16758327
TU156380 True 1788 lncRNA 0.38 1 16759554 16761341

Neighbor

gene id symbol gene type direction distance location
CI01000026_16739750_16751270 CPEB1B coding downstream 5506 16739248 ~ 16751465 (-)
CI01000026_16645459_16698069 MTSS1L coding downstream 58707 16645264 ~ 16698069 (-)
CI01000026_16553812_16554906 NA coding downstream 200893 16553382 ~ 16555883 (-)
CI01000026_16432592_16456842 NA coding downstream 299934 16432527 ~ 16456842 (-)
CI01000026_16297047_16419596 NA coding downstream 337037 16296642 ~ 16419739 (-)
CI01000026_16817010_16832208 SIN3AB coding upstream 56034 16816295 ~ 16832208 (-)
CI01000026_16959659_16962519 CDKN1CA coding upstream 199012 16959273 ~ 16963221 (-)
CI01000026_16988458_16994714 TRAF6 coding upstream 227555 16987816 ~ 16995104 (-)
CI01000026_17021405_17034147 MFGE8A coding upstream 260256 17020517 ~ 17034147 (-)
G137751 NA non-coding downstream 122368 16634181 ~ 16634408 (-)
G137739 NA non-coding downstream 131648 16624848 ~ 16625128 (-)
G137723 NA non-coding downstream 148076 16608495 ~ 16608700 (-)
G137678 NA non-coding upstream 23143 16783404 ~ 16784247 (-)
G137674 NA non-coding upstream 24064 16784325 ~ 16787020 (-)
G137771 NA non-coding upstream 32158 16792419 ~ 16792637 (-)
G137669 NA non-coding upstream 51250 16811511 ~ 16813504 (-)
G137776 NA non-coding upstream 84786 16845047 ~ 16845250 (-)
G136110 NA other downstream 2201340 14554917 ~ 14555436 (-)
G133802 NA other downstream 5449595 11301915 ~ 11307181 (-)
G133790 NA other downstream 5919171 10834015 ~ 10859589 (-)
CI01000026_10788054_10788652 CD59 other downstream 5966622 10787339 ~ 10789709 (-)
CI01000026_10347872_10351783 CEBPA other downstream 6407819 10347746 ~ 10351783 (-)
G137667 NA other upstream 46103 16806364 ~ 16808372 (-)
G137914 NA other upstream 222990 16983251 ~ 16984352 (-)
G137967 NA other upstream 308087 17068348 ~ 17069433 (-)
CI01000026_16756776_16760261 RBPMS2A, RBPMS2B, RBPMS2 other downstream 1227 16756729 ~ 16761341 (-)

Expression


Co-expression Network