CI01000026_16959659_16962519 (CDKN1CA)


Basic Information

Item Value
gene id CI01000026_16959659_16962519
gene name CDKN1CA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 16959273 ~ 16963221 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_16959659_16962519.mRNA
TAAGCCTTGAAACTGAAAAACACACCATTTTAAATATTTAGTCAAACTAAATGTAGCATTTAGTCCTATGCTCCTTAACATTCGGCGCCCCGGAGGATTCAACTGAATCAAAACTAGGCTATAATTTGCATAGAACAAATAGTACAATAGTAACAAATACCTCAGACTAGTTAAATCCTGGGCGACCAAATATTCAGAATAATCAAATGTATAATTGTATTATATTAATTTCATATCATAATATAATTTTATATTGTTGTAATATTTATGTTGCATATACTTTTATCGTATTGTTATTATATATGCCTATTATAAATAATATAGAGAGACTATTATATTTTTCATTTATTTATTAGGACTATATAATTTTATAACACATTGGTAGAAATTACTACGTTTTTAACATTGTAACATTCTTCTTTTTCTTTTTCTTTGTTTTCAGAAAAAAAAAAAAAAATCACTTATTTCATGGTCTTCATGCATGGGCCATAATTTTCGGACTGTGGTTTTCTAAATGAGGGGGGAAGGTGACTTTGCTAAAACTGGTGGGGGGTTTATTACACAGGGCGTGGTGTCCATCTAGCCAATAGGAGGCCTTTGCTCGTACAAACGCTGGCCTTTAACCACCGGCACGGATATAAACAGACTACAAACAACAAGAACTAAACAAGCGTCAGTTCACGGCATTGACTTTTAGGCATCATGGCAAACGTGGACGTATCAAGCAATCTGGAGCGTCATGTTGCACGGAGAACGTTTCCTCTTCTCGCTCGCACGAAGGTCTGCCGTAACCTTTTCGGACCCGTAGACCACGAGGAGCTGCACTGTGAAATGAAACGCAAACTCCAGGAGATCTCCGAGCGAGACCAGAGCCGGTGGAATTTTAACTTTGAGACCAGCTCGCCTCTGCCTGGAGATTACGAGTGGGAGGCGATTTCAGAGGAAACTATGCCATTTTTCTACAAGGATAAAGTGCAAAATAAGAAAGCTCGCGCCGCGGCGTCTGTTAATGCAACAGGGGACTCATCCAGCACTGTTGACTGTGGGTTACACGGGATTTCCAGGAGTCCGGTAGTTCAAGAATCCGCGGACGTCCCAAGTCGACCCACCGAGCTTAACCAGGAGAACCTCTCTAGTGCACTCAACTCAAAACCAGCTCGCGCTTCAGTCCTCAGAAACAGACGAAAGAGGTCACTCTTCCCAGAGACCACGAGAAACAGCACGCCACAAATTACAGACTTCTTCCCGAAAAGAAAAAGGACCCTGGAGTCCAAACAGGATGAACGCAGCTCCCTTCAAGCCGGCACATCCACCAGCATTGAAGTAACGCCACGTAAAACAATAAGATGTCCGTATCTAGTCGTGTGCAAGAAAACAGAGATACTCCAGTCCGTCATGCCAACGACTGACCATCATTCAAATGAAGAAACGAATAATGTTCGGAGACGTGAAATGCAACTGCATAAAGATTGTTTGGGAACACTTTAAATTAATGTGTAAATGTGCAAGTTAACAAAAATAATAATGCAAACAATAATAGGCTACTAATAATTAACAATTAGCTGCTGTTTTATTTTATTTACAAGCAGGCCAAAATTAGGCCTACCTATATGAGGTAGCCTGCTAATTTGTATTACTCAGTACCGATGTAGGTTTTTTGAATGAAGGTTTATGCAGTAATAAGCATCATGATCAAATTGTTCTATTTTACTGAACGAATTTTTATCTTTCGCGTGTTAAAATATGATATAGGCTACCACTGAAAGCTGAATATGCAGGCTATCTCTAAAACATCTAGCCTAACAGACATGAAATTGTCTTAATATTGTTACACCACCGTGCTTCAAAATTTTTAATTTGATGATTTTAATAAA

Function

symbol description
cdkn1ca Predicted to enable cyclin-dependent protein serine/threonine kinase inhibitor activity and kinase activity. Acts upstream of or within cell fate specification; glial cell differentiation; and negative regulation of mitotic cell cycle. Predicted to be located in nucleus. Is expressed in several structures, including mesoderm; muscle; nervous system; neural tube; and notochord. Human ortholog(s) of this gene implicated in Beckwith-Wiedemann syndrome; IMAGe syndrome; and hyperinsulinism. Orthologous to human CDKN1C (cyclin dependent kinase inhibitor 1C).

NR:

description
Cyclin-dependent kinase inhibitor 1C

GO:

id name namespace
GO:0045930 negative regulation of mitotic cell cycle biological_process

KEGG:

id description
K09993 CDKN1C, P57, KIP2; cyclin-dependent kinase inhibitor 1C

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_16959659_16962519.mRNA True 1874 mRNA 0.39 3 16959273 16963221

Neighbor

gene id symbol gene type direction distance location
CI01000026_16817010_16832208 SIN3AB coding downstream 127065 16816295 ~ 16832208 (-)
CI01000026_16756776_16760261 RBPMS2A, RBPMS2B, RBPMS2 coding downstream 199012 16756729 ~ 16761341 (-)
CI01000026_16739750_16751270 CPEB1B coding downstream 208003 16739248 ~ 16751465 (-)
CI01000026_16645459_16698069 MTSS1L coding downstream 261204 16645264 ~ 16698069 (-)
CI01000026_16553812_16554906 NA coding downstream 403390 16553382 ~ 16555883 (-)
CI01000026_16988458_16994714 TRAF6 coding upstream 24595 16987816 ~ 16995104 (-)
CI01000026_17021405_17034147 MFGE8A coding upstream 57296 17020517 ~ 17034147 (-)
G137928 NA non-coding downstream 978 16958051 ~ 16958295 (-)
G137927 NA non-coding downstream 1718 16956866 ~ 16957555 (-)
G137820 NA non-coding downstream 51560 16907260 ~ 16907713 (-)
G137806 NA non-coding downstream 69195 16889674 ~ 16890078 (-)
G137790 NA non-coding downstream 94949 16864101 ~ 16864324 (-)
G137958 NA non-coding upstream 85047 17048268 ~ 17048478 (-)
G137959 NA non-coding upstream 85793 17049014 ~ 17049217 (-)
G137962 NA non-coding upstream 96648 17059869 ~ 17060072 (-)
G137966 NA non-coding upstream 103794 17067015 ~ 17067519 (-)
G137979 NA non-coding upstream 120804 17084025 ~ 17084219 (-)
G137667 NA other downstream 150901 16806364 ~ 16808372 (-)
G136110 NA other downstream 2403837 14554917 ~ 14555436 (-)
G133802 NA other downstream 5652092 11301915 ~ 11307181 (-)
G133790 NA other downstream 6121668 10834015 ~ 10859589 (-)
G137914 NA other upstream 20030 16983251 ~ 16984352 (-)
G137967 NA other upstream 105127 17068348 ~ 17069433 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035056 cdkn1ca coding NC_007118.7 CM002891.2 48663031 ~ 48667056 (-)