XLOC_008413 (rps6kb1b)


Basic Information

Item Value
gene id XLOC_008413
gene name rps6kb1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17406920 ~ 17424590 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016837
GCGGAGCGCGAGTATTTTCCCGCATTCCTCCGCGCGGGGGTGTCTGTCAGTCAGTTCAGTTCGCGTCCATGCCGGTCATGGCGACGGTGCGTTCATGTCCATGAGGCGGGAAGCGCGAGACCCACACGCGGTTTGAAGTGATTCCAGGCGCGAAACCAACGATGGCTGGCGTTTTCGACATCGATCTGGACCAGCCAGAGGAGAATGTGTCCGATGACGAGCTGGAGGAGGCTCAGATCAATGAGCTCATGGACCAGTGCAGTGGCTTTGAGTTTAACATGGATGACTGTGAGAAGATTGAGATATCAGAGGACAATGTGAACCAAGGCACAGAGAACATCCGTCCGGAGTGCTTTGAGCTTCTCCGTGTTTTAGGGAAAGGAGGTTATGGAAaggtTTTCCAAGTTCGGAAAGTATCTGGTGCTGCAACAGGAAAAATATTTGCAATGAAAGTCTTGAAGAAGGCTATGATTGTACGCAACGCCAAGGACACAGCGCATACTAAAGCAGAACGGAACATCTTAGAGGAAGTCAAGCATCCTTTCATCGTTGATCTAATCTATGCCTTTCAGACGGGCGGCAAGCTTTACCTCATCCTTGAATACCTAAGTGGTGGGGAGCTTTTCATGCAGCTGGAGCGAGAGGGAATTTTCATGGAAGACACGGCCTGCTTTTACCTGGCTGAAATCTCTATGGCGCTCGGACACCTGCATCAGAAAGGCATCATCTACAGAGATCTCAAACCTGAGAACATCATGCTGAACAACCAAGGACATGTAAAACTGACTGATTTCGGGCTGTGTAAGGAGTCCATTCATGACGGCACAGTGACCCACACTTTCTGCGGCACCATTGAGTACATGGCTCCAGAGATCCTCATGAGGAGCGGACACAATCGCGCTGTCGACTGGTGGAGTCTGGGGGCTTTAATGTATGACATGTTAACCGGAGCACCTCCTTTTACAGGAGAGAACCGGAAAAAAACCATTGACAAAATTCTTAAATGCAAACTGAACCTCCCACCCTACCTCACACAAGAAGCCAGGGACCTTCTCAAAAGGCTACTGAAAAGAAGTGCCTCATCTCGGCTTGGGGCTGGACCTGGAGATGCAACAGAAGTACAGACTCATCCCTTTTTCCGACATGTTAATTGGGATGATCTTCTTGCACGCAAAGTAGAACCACCATTCAAGCCTTTCTTGCAATCTGCTGAGGATGTGAGCCAGTTTGATTCAAAGTTCACCAGCCAGACTCCCGTTGACAGTCCTGATGACTCCACACTGAGCGAAAGTGCAAATCAGGTCTTTTTGGGTTTTACTTATGTAGCTCCATCCGTATTGGAAAATATAAAGGAGAAGTTCTCATTTGAGCCAAAAATCCGTTCACCTCGCCGGTTCTTGGGAAGCCCCCGAACGCCTCTCAGTCCAATTAAGTTCTCAGGAGATTGTTGGCCACGAGGTCCCACCTTACCCGGATCCTCCACCCTCCAGTCCCCCACAGAGCTGGCCATGGAAGTGTCCAGCGTGGATCACATGGATGTCCAGGCCAGTGCCGAAGCCACCGCTCCTCTTCCCATCAGGCAACCCGCTGGCTCCAACATGGGCCAGTTCAAGCAGCAGGCCTACCCAGTCATCTCCAAAAGGCCAGAGCATCTACGTATGAACCTATGACCATTAGTCCAACTTAGAATTTTCCTTTGCTTTCTCCATTTCTTTTATATGGACCTTCGGGGCGAAGAAAAGCCCCTGCTGTCACTACCATCAGCTCTTATATACTGTCCTTCACATCTGATGAGCATGTGTCTTTCACAGAGGAACTGCTTCATTTCCTCACCTCCCGAAACCTCAGCGCGCTTTCTTAGATGATTCCTGTCATTTACATATCAAGTGGATTTTTCAGTATCAGGCCTTCTTTTGGATTATCAACTTTTTTACATGATTTTACCATAAAAGGaacatgaaacaaacaaaaatgtacaaaaaaaagaagagacAATAAAGGACACTGTTTGCAAACGTGCAGATGAGTAAATGCTCCCTGCAAGATGATCAAGTGATGTGGAGGAGTTGCTTCCAGTGGGATGCTTtgagtttttacagtatttccgaGGGGAAGCGGAATGGCTTTCCAACTGTTAATGAATTGTACAAATCATTGCGGATTGCAAAATCAGATGCATTTGGGGGAGTTTCGCCCAGCCAGAGGTTTGCAACCTGAAGtcttatacatatttaaatgagTGTATCCCGCAGTGCTGTACAAATGATGGTTAAATACACGAGcctcaataaaaacaaatacgtTG
>TCONS_00016838
TCAGTTCAGTTCGCGTCCATGCCGGTCATGGCGACGGTGCGTTCATGTCCATGAGGCGGGAAGCGCGAGACCCACACGCGGTTTGAAGTGATTCCAGGCGCGAAACCAACGATGGCTGGCGTTTTCGACATCGATCTGGACCAGCCAGAGGAGAATGTGTCCGATGACGAGCTGGAGGAGTAACATGGATGACTGTGAGAAGATTGAGATATCAGAGGACAATGTGAACCAAGGCACAGAGAACATCCGTCCGGAGTGCTTTGAGCTTCTCCGTGTTTTAGGGAAAGGAGGTTATGGAAaggtTTTCCAAGTTCGGAAAGTATCTGGTGCTGCAACAGGAAAAATATTTGCAATGAAAGTCTTGAAGAAGGCTATGATTGTACGCAACGCCAAGGACACAGCGCATACTAAAGCAGAACGGAACATCTTAGAGGAAGTCAAGCATCCTTTCATCGTTGATCTAATCTATGCCTTTCAGACGGGCGGCAAGCTTTACCTCATCCTTGAATACCTAAGTGGTGGGGAGCTTTTCATGCAGCTGGAGCGAGAGGGAATTTTCATGGAAGACACGGCCTGCTTTTACCTGGCTGAAATCTCTATGGCGCTCGGACACCTGCATCAGAAAGGCATCATCTACAGAGATCTCAAACCTGAGAACATCATGCTGAACAACCAAGGACATGTAAAACTGACTGATTTCGGGCTGTGTAAGGAGTCCATTCATGACGGCACAGTGACCCACACTTTCTGCGGCACCATTGAGTAC
>TCONS_00016839
AGTACACATGAAGTAGGTGACCTGATGTCTTGTATTGGCAGCAATCTGCTGAGGATGTGAGCCAGTTTGATTCAAAGTTCACCAGCCAGACTCCCGTTGACAGTCCTGATGACTCCACACTGAGCGAAAGTGCAAATCAGGTCTTTTTGGGTTTTACTTATGTAGCTCCATCCGTATTGGAAAATATAAAGGAGAAGTTCTCATTTGAGCCAAAAATCCGTTCACCTCGCCGGTTCTTGGGAAGCCCCCGAACGCCTCTCAG

Function

symbol description
rps6kb1b Predicted to enable ribosomal protein S6 kinase activity. Predicted to be involved in TOR signaling and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation and signal transduction. Predicted to be located in ribosome. Predicted to be active in cytoplasm and nucleus. Orthologous to human RPS6KB1 (ribosomal protein S6 kinase B1).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005840 ribosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2038 Predicted to enable ribosomal protein S6 kinase activity. Predicted to be involved in TOR signaling and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation and signal transduction. Predicted to be located in ribosome. Predicted to be active in cytoplasm and nucleus. Orthologous to human RPS6KB1 (ribosomal protein S6 kinase B1).

Ensembl:

ensembl_id ENSDARG00000058230

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016837 False 2305 mRNA 0.48 15 17406920 17424590
TCONS_00016838 False 766 processed_transcript 0.49 7 17406970 17416607
TCONS_00016839 True 262 lncRNA 0.47 2 17420113 17423619

Neighbor

gene id symbol gene type direction distance location
XLOC_008412 CR848791.3 coding upstream 28857 17376367 ~ 17378063 (+)
XLOC_008411 dre-mir-21-2 coding upstream 33005 17373789 ~ 17373915 (+)
XLOC_008410 vmp1 coding upstream 33568 17343319 ~ 17373352 (+)
XLOC_008409 cltcb coding upstream 66722 17285989 ~ 17340198 (+)
XLOC_008408 dhx40 coding upstream 121732 17258246 ~ 17285188 (+)
XLOC_008414 snx19b coding downstream 17144 17441734 ~ 17489726 (+)
XLOC_008415 adamts15b coding downstream 196785 17621375 ~ 17652807 (+)
XLOC_008416 si:ch211-213d14.1 coding downstream 297464 17722054 ~ 17748319 (+)
XLOC_008417 si:ch211-213d14.2 coding downstream 328325 17752915 ~ 17757994 (+)
XLOC_008418 zgc:113279 coding downstream 424000 17848590 ~ 17856878 (+)
XLOC_008463 BX663520.1 misc downstream 3827601 21252191 ~ 21252282 (+)
XLOC_008403 BX571762.2 non-coding upstream 485933 16914731 ~ 16920987 (+)
XLOC_008400 BX649487.2 non-coding upstream 577044 16829762 ~ 16829876 (+)
XLOC_008398 CR847990.1 non-coding upstream 887837 16518967 ~ 16519083 (+)
XLOC_008419 NA non-coding downstream 461608 17886198 ~ 17936128 (+)
XLOC_008420 CR385077.2 non-coding downstream 662112 18086702 ~ 18086816 (+)
XLOC_008422 NA non-coding downstream 961000 18385590 ~ 18401208 (+)
XLOC_008423 NA non-coding downstream 1363826 18788416 ~ 18792858 (+)
XLOC_008425 NA non-coding downstream 1731300 19155890 ~ 19157908 (+)

Expression


Co-expression Network