CI01000026_17021405_17034147 (MFGE8A)


Basic Information

Item Value
gene id CI01000026_17021405_17034147
gene name MFGE8A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 17020517 ~ 17034147 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_17021405_17034147.mRNA
ATGAAGACCCGGAACCTTACTCGGTCCTGTATAATAGTTTTTGTCAGTTTAGTCATTTGCAGCATTTGTACTGTGAATGGAGATTACTGCAAGGTGAACCTGTGTCACAACGGAGGGACATGTGTGACTGGCATTGGAGAAGATCCCTTCTTCTGCATCTGTGCTGAGGGATTTGCCGGAGATACTTGCAATGCCACAGAGAATGGTCCTTGTAACCCAAACCCATGTAAAAACGATGGCACATGTGAGGTGATCGCTAACTCCAGAAGAGGAGACGTTTTTAATGAGTATGTGTGCAAATGCCAACCTGGGTTCGAAGGTGCTCACTGCCAAATCATGGTAGAACAACTCTTCACCAGACGAATTCTACTGCCGCTGCTACCTGAGCAGCCTCCTAGCGGCTACAACCACACTCTGCAAGTTTCGCGTTCGGGTCGGTACACACAGCCCCGCCCATCCCCTGCCAGCAGAAGAGTGCGACCTGCTTTACGGCATACGTCACATATTTTACTCGTAGCCTGGAGAAGCATCCCATTACATCATGTCCAGCTTACTGTAGAAGTTGGACACGTCACATTGACATTGCTGTATTATTTTTGGTGTTCTTACACAGATGTGAATGACTGTGCAAACCAACCTTGTAAGAATGGAGGCCTGTGTCGTGATCTGGATGGGGACTACACCTGCCAGTGCCCTTCTCCATACGTTGGGAAGCAATGCCTGCTACGCTGTACATCTTTATTGGGGATGGAGGAAGGAGAAATCGTGGAGTCCCAGATCTCGGCTTCGTCTGTACACTCTGGCATTCTAGGGCTGCAGCACTGGGGACCGGAGCTCGCGCGACTCAACAATCGGGGCATTGTCAACGCCTGGAGCTCCGCACCCCAAGACAAGAACCCCTGGATTGAGATTGACATGCAGAAGAAGATGCGTCTCACTGGAATCATCACCCAAGGAGCCAGCCGCATGGGGACAGCTGAGTTTGTCAAGGCTTTCAAGGTGGCGTCCAGCTTTGATGGCAAAACATACACAGTGTACAGAGCGGATGGTCAGAGAAAAGACAAAGTGTTTGTGGGAAATACAGATAATGATGGAACAAAGACAAACATGTTTGACCCACCCATTGTGGCCCAGTATATTCGCATCATTCCTGTGGTGTGCCGTAAAGCTTGTACTCTCCGGATGGAACTTGTGGGCTGTGAGCTAAATGCATTTAGCACTCTTATTTTCCCTAACATGACAGTGCAGTCCAGCACAATCGGTTGCACTGATCCGCTGGGTATGAAGTCCCGTCTCATCTCTGACACGCAGCTTACAGCATCTAGTACTTTCCGTACATGGGGTATAGATGCCTTTACCTGGTACCCCTACTACGCTCGTCTGGACAAGCAAGGCAAGACTAACGCTTGGGCGGCAGCGAACAACAGTCGCTCAGAGTGGCTCCAGCTGGATTTGGAGAAACCTAAAAGAATCACAGGCATCATCACTCAGGGAGCAAAAGATTTTGGAGTTGTACAGTTTGTTTCAGCATTTAAGCTCGCTTACAGTGATGACGGACAAACATGGAGCATTGTGAAGGATCAAACAACAAGAACAGACAAGATTTTCCAAGGCAACAGTGACAACAACACATACAAAAAGAACTTGTTTGAGCCTCCGTTCTTTGCCCGATTTGTGCGGTTTCTGCCCTGGGAGTGGCACGAGCGGATAACTGTACGCATGGAGCTGCTGGGCTGTGATGATTAATGAATGTGCTGAAGGCTGAACGCTGTTTGAAGTCTGTCTGCTTGTTGTAGGTGATGATTTGTTTCAATATACATTAGCTTCAGTTGTTGCTCTGTATTTTATTGAACTGATGTCATTATTTTGATGTACTTTTGAAGGGCTCAGTTGATGTAATTTTCAACACCTTTGGGCACAGTGACAATTTTATGAAACCACCTTTTAAGTAAGTTTCAGAGAATATTACAAAATTTGAAAAACATAAACCTGAAAGGAAAACGGAGACTAATTGTAATGCTTTATTAAAATTATTAGCTTCACAACCAATGACCATTCTTGTATTTCAAAATGTATGTCCTAATTTACAATGAAATATACAAACTCATAAATATCTTTTACTGTTACTCATCTTTGGCCACCAAGGTGAGAAAATCTATTCATGAAGCAGCCTACCTGCTTCAGCCCGTCTTAAATATAACAGCCCACTAGTGCTGATGTCCAATAGTTGCTCTTATTCTGCCTTCTAACACTCAGAGGAAAAAGGTCAACTTGTAACTCTGTGTCTTTTTGCTGTAAGCACACAAAAACTGTCTGCAATTTTTTTTCCTGAACTAATCTTGACTGTCTGGAGTACATTTATATACAGTATGAGTCTGTTAGAAACAGTGCTGTAAATTAGAAATGAATTGAAAACACTCCAGGGAAATTTCTTTGTTGAAATTTCATGTTAAGAGTGGCAAAGCTGCTCAAATCAATTGAATTGTTTGCACTGCAGTTGCTCTACACTTTATACATTTTATAACTCTATTTTATTTGAGTCAATGTAAACAACCAAATTGGAATAGAATTGTACAATTGTGCATATATTGAGTATCTTTTGTAAAACATGTTGTCTTTAACAATATTAATAAA

Function

symbol description
mfge8a Predicted to enable calcium ion binding activity. Is expressed in central nervous system and ventricular zone. Human ortholog(s) of this gene implicated in temporal arteritis. Orthologous to human MFGE8 (milk fat globule EGF and factor V/VIII domain containing).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_17021405_17034147.mRNA True 2634 mRNA 0.44 11 17020517 17034147

Neighbor

gene id symbol gene type direction distance location
CI01000026_16988458_16994714 TRAF6 coding downstream 25413 16987816 ~ 16995104 (-)
CI01000026_16959659_16962519 CDKN1CA coding downstream 57296 16959273 ~ 16963221 (-)
CI01000026_16817010_16832208 SIN3AB coding downstream 188309 16816295 ~ 16832208 (-)
CI01000026_16756776_16760261 RBPMS2A, RBPMS2B, RBPMS2 coding downstream 260256 16756729 ~ 16761341 (-)
CI01000026_16739750_16751270 CPEB1B coding downstream 269247 16739248 ~ 16751465 (-)
G137928 NA non-coding downstream 62222 16958051 ~ 16958295 (-)
G137927 NA non-coding downstream 62962 16956866 ~ 16957555 (-)
G137820 NA non-coding downstream 112804 16907260 ~ 16907713 (-)
G137806 NA non-coding downstream 130439 16889674 ~ 16890078 (-)
G137790 NA non-coding downstream 156193 16864101 ~ 16864324 (-)
G137958 NA non-coding upstream 14121 17048268 ~ 17048478 (-)
G137959 NA non-coding upstream 14867 17049014 ~ 17049217 (-)
G137962 NA non-coding upstream 25722 17059869 ~ 17060072 (-)
G137966 NA non-coding upstream 32868 17067015 ~ 17067519 (-)
G137979 NA non-coding upstream 49878 17084025 ~ 17084219 (-)
G137914 NA other downstream 36165 16983251 ~ 16984352 (-)
G137667 NA other downstream 212145 16806364 ~ 16808372 (-)
G136110 NA other downstream 2465081 14554917 ~ 14555436 (-)
G133802 NA other downstream 5713336 11301915 ~ 11307181 (-)
G137967 NA other upstream 34201 17068348 ~ 17069433 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035059 mfge8a coding NC_007118.7 CM002891.2 48788147 ~ 48805181 (-)