XLOC_008414 (snx19b)


Basic Information

Item Value
gene id XLOC_008414
gene name snx19b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17441734 ~ 17489726 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016840
CTGAGACCTGCAGTATAGTGTTGGGGCTGCGGGTTTGGGCGTATGGCCTCCAGAGGGCGACAAAACCCCGAGTTCATCAACTCATCATCAGAGGCGGAGATGCAGAGGAAGAAGCTGTCAAAACATTGCGAGGCCGTGTGAGAGTCGGCTTTTCAACATGAATTGGTTTGGCTCCAAATTTGCACATTATTTCCAGCACCCATGTTGTTAAGGAGAATGTAAACATCTGCAATGTCTCAGCCTGAGCATCTCAATGCAAGTCCCTGGGGCTTGTCTGAGTTATTGGTCCAGAAGAGGCTGCTTGGTTTTGGGGCGCTGTTGGCCTGGATGGTCTTGTTCCACCTTCTGGTCAACGTTTGGCTCCTCTGTGTTTTCACAAGCCTCTTAGTGGTCTTAGGTGGTTGGCTGGGTTCTCAGGCTGTCCTAGTCTCAGACAGTGTTGTTCATCTGGAGCGCTTTATTAAGCTGGAGGAGATCCAAGATAGTGCTGAGAGTGAACAACAATTGGAAGATGAAATCCAAAAGACAGTCGATAAAATCGTACGCGACTTTGTCACATCATGGTACAGTACTGTTTCCGATGAGCAAGAGTTTGAGGATGAGGTTCACAATGCCATGATCTCTATGGCCATGGAGCTGAAGGGTCGAGCATCAAGGGTTGACAGGAAAACTTTGTCCCAGAGGGTGCTTGATCTCTCTGGATGCCATCTTCAGGGCTTCTTGAGTGCCAGTGGAAAACAAGAGGTTGACAAAGATGGAGATCTCTGGGGGACATACAGCAAACTCTGTCCTCCTCATCCCGCTCTTCAGAGCGCTGCTGTCGAAGTAAACTATGTACGGGCCATTGTAGATCTCCTTCTACATGTTCTTGTACCTCCTCCACATTTAGAAACACGAACAGGTCGATTTGTGGTGGGCGAACTTATAACATGCAATGTTATTCTGCCTTTAATTGCAAAACTATCTGATCCAGATTGGCTAAATCTTTTAATTGTAAGCATTTTCACCCAATCCAGTGAACCTGGTTCAGAACCAGAACCAGTAGAAATTCAATCTCCACCACAGGTTGTATCTGCTCAAGAAAATGCACAGCAAGAACTTGCGGTTCCTTGCGTTCTGACCCTAAAAGTTACCCCAGACACACCCAACATAACAGAGGCCTCAACGCCAGAACTTGCGGCTTATGATGTCATTGATTCCGCAGAACTTTTTTCTCCACACAACCTGGAAGAAGATGAATCTCGGACAACCAAACCATTCCCGTTGGGTTTTAGTCCCAGGGATTACCTGCGACTAAGCAAGCCAAATCCATTCTACCAAGAAACCGACTCCGATTTGGAATCTCCTCTGACGGACTTCAAGCGGGGCTCCTTGGAATCATTGGTTCTAATTGGTACAGAGGAAACCCTTTCAGAAAGACTCACCGAATGCGTCACTCCAGTTGACCCTTTGTTAGACCTTGAGGATGACCTTCCAACTTACACCAATACAGCAGAGAAGGAGCCATCAGCAGCACATTCTGCCAGTGTCCCAGAGGAAGAGGCATCAAGTTTTTGTACTCTCCAGCCATCGGAGAAGTGCAACTCGAGTATAGACCAGCCAGGCCTGTTAAATCCTGGTGACCTGGCTTTGAATACACCCATCCAGGTCACTTCACCAGGTGGGATGGCGTCTCTGGCACCTTTCAACTTTGAGCCCCTCAGTAGTCCAGAGGGTCCGGTTATTATCCAGAACCTCCGCATCACTGGTACCATCACTGCCAAGGAACACAGAGGCACTGGATCCCATCCCTACACTCTCTACACTGTAAAGTATGAAACAGCCATGGACTCAGAGAATCCAGAATCGTTGCAGCCTTTGGCTTATCACACTGTGAACCGACGCTACAGCGAATTCCTCAACCTTCAGACCCGTTTGGAGGAGAAACCAGAATTACGCAAAATTCTTAAAAATGTGAAAGGGCCAAAGAAAATCTTTCCTGAACTTCCTTTTGGAAACATGGACAGTGACAAAGTGGAGGCCAGGAAAGGTCTATTAGAAACATTCCTCAGACAACTTTGTGCCATTCCTGAAACAGCCAACAGTGAAGAAATGCAAGAGTTCCTCGCTCTTAACACGGATGCAAGAATTGCGTTTGTTAAGAAACCTTTCATTGTCTCACGCATAGACAAGATTGTGGTGAATGCTATAGTGGACACTCTGAAGACAGCCTTCCCTCGCTCAGAACCACAAAGCCCTACTGACGACATTGACGGAGAGCCTGATGGAAAACTGTCCACTGACAAGAAGTCCAAGTCTAGAATGAGGTTCTCTAGTAAAATCGCACCTGCTCTCAGCGTGTCTGACATGAAACCCAACGTGGTTTACTGCTTTGATGAAAGCAGCACTgttttcaATGGCTTCTTGTTGAACGAGCTGGAGAGCTTCATCTCAGAGAAGGAGCGTTCTGAAGGTAAAGCTCCAGGGTTTGATGCTGATGCCGAGAAAAGTGTAGGCTCCGGACCTAAATTGGATTTGAAAACCTGTATGTGTGCCAGACCACAGCTGGAGAATGCACCTTCCTTCAGTGAATCTGCTGAGGAGACGGCTCTATCTAACCAGACTCTGAATATCCTGTGCATGCTAATGAAGAATCAGTGGAGCTGGCTTTGCACAGAAAACATCCAGAAGACCATCAGAATGCTGTTTGGGACCCTCCTAGAAAGGTGGCTGGAGGTGGGTGTCGGGAACCTGACCTGTACACCGTATTGGGTGGTGTACCTGCAGGTGCTGCAGGAGGCCATTTGGCCTGGAGGGAATCTGCCGGCTCAACCGCGACCACAGCGCAGCCAGCAGCAGAAAGAGCACAGCAGAAAGCAGGCTCTGCAGTGCCTTATGAAGCTCATGCCAGATCTGATCTCCGATATGCTCGGCTCTGAGAAGTACAAGGTTTTTTGGCAGACGGTTGTGGATTCTTTTCAGGACCCCACTGTAAACAGGCATCTTGTATACTGCCTCTGGGATCTGCTAATCGAGTTTCTCGTCCCCGAGGCCTCAGATGAGGACTTTCAAAAAACACTTCTTCACAGCCTGTCCAAAAACGCAGAGAGGCTTCCACCATAAGTGTGCTGGGCTGGATGGACACAAACACACGTGCATACACGCCCACATTCATAGCATATCCAGATTTGTGGCCAGTGCTAAATGTAAATACAGGAATGTGTGATCAAGTAAGTGTAGATTTGGATTCAGTCAGTGCCTGGCTCCAATTTGGTTTCTATGTTTCTGGGACACACTTCCGGGCAAACACTGATAAATAGCCACCTGTTTTGTGTTTTATCAAACCACAAGTCCAATCTCTAAAGCTCAACATACCGGATCTGAATTAGTTGCAAGTTCTCTAACTTTTATCCACCTTGTTCCTACTTGAGCTCTGGGCAAAGCTCTTACATATGGAGACGTTTCCGTGGCGTCCATTCACGTGTTTCCGGCCTTTCAGTCTCGATGTGCTTTGAGTTTACACACATTCCCTCCTTAATCACATTGATACACTTGATCATTTTGCTTCAGGTCTTCTTTAGAGATTCTGTAAACACTCTCTCAGTCTTATCTCTCCTGCCTTCCAAGAAGGAACGCCAATCTTTTCATCATATTCCTCTTAAAGAATGAAAGTTTTTTTCACATCTGCTTCTGGTGTCACAGGAATGCTGTACGTGCTTTGTGTGCTTTCAAAGTCTTTAAACTTGATGTCTCTCTTCACAAACACTGATTAAATGGTTAGATGACCACATAAAGCCTACGAGGAAAACAAGGTTATGTTGATTAACCAAAAATGGCCAGTTTTCAGAATCCTTGTCTTAATATTTATGAAGTATGTGTACATGTTAtctgaaagggatagttctcaCAAGAgtgacaaatatttttttttcgttttgttCCAGACATGTGTTGTTTTTTCTGAGAAAGATGAAAAAATTCTAAAGGAACACtccttttttggaaataggcttattttacaagtcccctactattaaactgttgagttttaccagtTTTAAATCCTTTCTGGCGATCTTCGGGTCACAGGAGCACTttcagcttagcataaatcattaagtCAAACTTTTCATATTTTGTCTGTCTTAGTTCATGTCCTAGAATCAAGCTTTACACAAGCAAATCATAGAAActcttatttgattttttttttgtaagatgctaatggtctaatctgattttgtgatttatgctaagctaaactaaaagtacTTCAGCTGAATGGACTAGTAAAACTCAGCTGTTAAACTCCAGGGGATTTGTAAAATTAGCAATAATGTTGCAATTGTGAAATTAGTattgaatattcttttaaaatgccTTATAAATTGCGGAAAGGCATACTGGCTTGGAACAACATGCGGGTAAATAATGGCATTAAACTATCCATTTATTAAAACGTACatctttttaaatgtacaaaacaatGCCGCAGACTGAGTTCTAACAACAAATAGAAGAGAATAAGAGTACACTTGGTTTGTGGTTTACATAATTTCTTAGAAGTCTAGCACAAAAAAGATGTCTTAATCACCTTAAAGTGTTAATgatttttagtaaaaaaacaaaaaacccagTAACAAATGGATGCTTGTGAAACTTTTTTGTCAGTCTGAAAAACCCTTTTAAATGGATTGTTCTCCAAAAATGGTAAGTTACtcaatatatagttttttttcttttaaagaacaTGTGCTGAAACTGTGTAGACCACAGTCACTTATGAAAATCCAAACTGTAGCTGGATTTTGAGGGTCAAAAAACTAAGACAGGCAAAATAAATACCTTTTTTTCCTGAGGATACATTTAAGATCTTAAGACCAAGGAAACATTAAGACCAagactttgttgttttttgtagtaaatcaccaaggaccaagtcttctttaattttcttctaaaaaaacTCAACGACTTCATTGATTTCCTTAAGATGAGTAAATTTAcagctattgtttgtttttaaggcaTATTGTCCAATTAATGTGTTACTAATCTTTTCATAACTTAAAAGTATTTCtgtcagtttttgttttattagcaCTGTGTCATCTAGTCAACATTCTGTTTGCACTACCTGGTGTGAGCCTGGATTCGATGCATGCAGATTTAGTTTCTGCACTGTGAGCCCTGTTACACTAAGTATGCACTGCAATGGCTTCATAGTGTTGTCATTACACTGTACTTTTGCTTAATGCGCTGAATGTTGCactatttgtaattttgtaagtgatatatatatatctattgtTGGCCTTATGTTGTTCTGATGTCTGTTGAAATTAGAGAGTAAAGCAGTCAATGTCATTGAATTAAGTGGAGATGTATTGCAGAGACAATATCACTTCTTTATAAAATGCTTTCAGGTTTGGTTAGCATGTTACATTTGTTAGTAGTAGCGTATTCAGACTTAATTGTGATCCAGGTTATATTTAAAACCGTAAAACAGCTGGAACCAAAAACAAAGATATATtaaattagggctgggcaatatggcaaaagTGCAATCTCcataattaatttccatattaaatgaTAACAATATAGATTTTGATATaagttaatgcttccagattttaaAGAGTATCCCAAcgatgactgaagccacaaaaattagagcaTCCATTAAATGGCTTAACATTTTCGGCTGATAAATTTTCTTTGGCCGAAAATTTGAAACATCTTGAATGTATCAAATTCGATACATCTCAAAAATTCGATACATCTTGAATCATACATCTCGGTGGGCGAAAATTCGATATCAACTCATTCAAtgtcccattgttgcacatttctgctgattaattggctcttagatcaatatagagtaaaaaagtccagagcttatcgttgttattgacataaattttattgcaattataatatcgtttatcggcccagccctatatTAAATGATGCAAACAAATCTaccaaaacatgaaaaaaaaaactattctcacTTGTTAACATAGACCCGAATATAATGTTTAGCTCACAATTAGTGCAAAATAGAAAATAATGCTTTGACAGAATGATTGAATGAGAAGAAGCCTAATACTATTGACAACGTGGATACTTTTGGTTTACAAAATAGTTTTTGCAGCAATGTGATCTTCGTTTGTCAGCATTCATGAGCTTCACATGATAAATATTAACATGTTGTGTTGTGAATAGCTAAAGCTGGGTGATGTATGATTTAAAACGGGACTCCTCGACTAAAATGATGTaatgaaataacaaaaattatataatttttaggCAAGCCATTTGAATGAATTAGGTAGCACTTAAGTATGAAACCCTACTGTGATTTACTGTTTCTTCATTGACACGCTGTTACATTAATATACCTGTCAATCTGTTTTTCATTCCATCAAGTTAATAAATTTTTCCGTTATTAAAGTCAAAACA
>TCONS_00016841
CTATAGTGGACACTCTGAAGACAGCCTTCCCTCGCTCAGAACCACAAAGCCCTACTGACGACATTGACGGAGAGCCTGATGGAAAACTGTCCACTGACAAGAAGTCCAAGTCTAGAATGAGGTTCTCTAGTAAAATCGCACCTGCTCTCAGCGTGTCTGACATGAAACCCAACGTGGTTTACTGCTTTGATGAAAGCAGCACTgttttcaATGGCTTCTTGTTGAACGAGCTGGAGAGCTTCATCTCAGAGAAGGAGCGTTCTGAAGGTAAAGCTCCAGGGTTTGATGCTGATGCCGAGAAAAGTGTAGGCTCCGGACCTAAATTGGATTTGAAAACCTGTATGTGTGCCAGACCACAGCTGGAGAATGCACCTTCCTTCAGTGAATCTGGTAAATACTTTTGTCTGAGGAGACGGCTCTATCTAACCAGACTCTGAATATCCTGTGCATGCTAATGAAGAATCAGTGGAGCTGGCTTTGCACAGAAAACATCCAGAAGACCATCAGAATGCTGTTTGGGACCCTCCTAG

Function

symbol description
snx19b Predicted to enable phosphatidylinositol binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SNX19 (sorting nexin 19).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6331 Predicted to enable phosphatidylinositol binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SNX19 (sorting nexin 19).

Ensembl:

ensembl_id ENSDARG00000079931

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016840 False 6450 mRNA 0.41 12 17441734 17489726
TCONS_00016841 True 530 mRNA 0.47 4 17446796 17451345

Neighbor

gene id symbol gene type direction distance location
XLOC_008413 rps6kb1b coding upstream 17144 17406920 ~ 17424590 (+)
XLOC_008412 CR848791.3 coding upstream 63671 17376367 ~ 17378063 (+)
XLOC_008411 dre-mir-21-2 coding upstream 67819 17373789 ~ 17373915 (+)
XLOC_008410 vmp1 coding upstream 68382 17343319 ~ 17373352 (+)
XLOC_008409 cltcb coding upstream 101536 17285989 ~ 17340198 (+)
XLOC_008415 adamts15b coding downstream 131649 17621375 ~ 17652807 (+)
XLOC_008416 si:ch211-213d14.1 coding downstream 232328 17722054 ~ 17748319 (+)
XLOC_008417 si:ch211-213d14.2 coding downstream 263189 17752915 ~ 17757994 (+)
XLOC_008418 zgc:113279 coding downstream 358864 17848590 ~ 17856878 (+)
XLOC_008419 NA coding downstream 396472 17886198 ~ 17936128 (+)
XLOC_008463 BX663520.1 misc downstream 3762465 21252191 ~ 21252282 (+)
XLOC_008403 BX571762.2 non-coding upstream 520747 16914731 ~ 16920987 (+)
XLOC_008400 BX649487.2 non-coding upstream 611858 16829762 ~ 16829876 (+)
XLOC_008398 CR847990.1 non-coding upstream 922651 16518967 ~ 16519083 (+)
XLOC_008420 CR385077.2 non-coding downstream 596976 18086702 ~ 18086816 (+)
XLOC_008422 NA non-coding downstream 895864 18385590 ~ 18401208 (+)
XLOC_008423 NA non-coding downstream 1298690 18788416 ~ 18792858 (+)
XLOC_008425 NA non-coding downstream 1666164 19155890 ~ 19157908 (+)

Expression


Co-expression Network