XLOC_008425



Basic Information


Item Value
gene id XLOC_008425
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 19155890 ~ 19157908 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00018922
AGCATTTGCCTTAACGCAGCTGTAGAGGCCTGGAGATTCAAGGATTCGGGGTCTAAAAATACACAGGGCTTTAATCTAAAGCCGCATGAATGTGGCAGACGCGCAGGTTTTCTAAGACTTAGCACAGGAGTGAACTCGATCATaactttactttttaaagtagACGTTGTCCTCCTCCCAGTACCAGGTGTAGGTCAGGTTGCCAGGATACGCCTCTGCTTGGCACGTGAATTGGGCATTCTGGGATATGTTAACAGTGATGTTTTCAGGTGGTGTCACAATGTATGGAGGACCTGGTGGAGGCAAAACAAAAATCAAGATTGAGAagaagcgcttttaacttctcccccaatctctcactggcctgcagatacccatactgaTTGAtgctgctctctgattggctgtaggtaatGGGCGATATTATTTTCAAtcaaaacacatttcacatggcatgatttgaatcgccgactggtccagatattcagcatgccaaatatctcaagGGTGTCGGCGACTTATCggcaattctctcagatcgcatctttgatagCTAACACAGTGTGATTGTTACTCGCAGG

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00018922 True 581 lncRNA 0.45 2 19155890 19157908

Neighbor


gene id symbol gene type direction distance location
XLOC_008424 cadm1b coding upstream 167305 18863872 ~ 18988585 (+)
XLOC_008423 NA coding upstream 363032 18788416 ~ 18792858 (+)
XLOC_008422 NA coding upstream 754682 18385590 ~ 18401208 (+)
XLOC_008421 dixdc1a coding upstream 999899 18130109 ~ 18155991 (+)
XLOC_008420 CR385077.2 coding upstream 1069074 18086702 ~ 18086816 (+)
XLOC_008426 NA coding downstream 24940 19182848 ~ 19187834 (+)
XLOC_008427 BX324206.2 coding downstream 126934 19284842 ~ 19286143 (+)
XLOC_008428 BX324206.3 coding downstream 129724 19287632 ~ 19291377 (+)
XLOC_008429 jam3a coding downstream 135836 19293744 ~ 19320615 (+)
XLOC_008430 vps26b coding downstream 166789 19324697 ~ 19331078 (+)
XLOC_008463 BX663520.1 misc downstream 2094283 21252191 ~ 21252282 (+)
XLOC_008419 NA non-coding upstream 1219762 17886198 ~ 17936128 (+)
XLOC_008412 CR848791.3 non-coding upstream 1777827 17376367 ~ 17378063 (+)
XLOC_008435 CR626889.1 non-coding downstream 530967 19688875 ~ 19721754 (+)
XLOC_008436 NA non-coding downstream 594973 19752881 ~ 19755818 (+)

Expression



Co-expression Network