XLOC_008433 (lim2.3)


Basic Information

Item Value
gene id XLOC_008433
gene name lim2.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 19646902 ~ 19660757 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016878
gcttatacaaataaagctgaattgaattgaattgaattgaattaaaggggctaataattttgtctttaaaatggtgtttaaaaatttaaaaactgcttttattctagccgaaataagactttctccagaagaacaaatatcatcagacatactgtgaaaatttctttgccctagctgtaaaacataatttgggaactatttaaaaacgagaaaaaaaaatcaaagggggactaataattctgacttcaactgtatagccaTAGTTCCATTTAACCAGTGTTTTTagcaaataaaatctttaaaagaaacaaacttttcttttttattaaatattttaaataatgttaaagctgcaagcagcaatgaaaGGGACCTTGCACCTGGGCATACCACTGCCCGGTGGCCTTACTATGacagagataataataataatttaagctgatgactataaaaaaaatcctgaataaAATCACTAATTTATgtcaaacttccttctgtcagcaggtggagCAAATGCTATAACTTAATATTTGAATGTAAATGTCTTCAGGAGAAGAATCTCATCGAACCTGACAATTTTCAGGCAGATTGGACTTTGTCAGTCCACCACGGACACACCTTTCAACGAAAACTCTCAATATAGGTTCATtcaaattatgtagtcagagTGTGTGTAGGTGCAAGATGTACAGCTTTATGGGAGGTGGATTGTTTTGTGCAGGAGTGGGAAACATACTCCTGGTGATCTCCACTGCCACCGATTACTGGATGCAGTACCGCCAGTCCAGCAGCTACATGCACCAGGGCCTATGGCGCTACTGTGTACCTGGAAAATGcatgacacacacagacagcattgCATACTGGGACGCCACCCGGGCCTTCATGATCCTGGCCACCTTAGCTTGTTTCTTTGGCATGATCATCGGTGTCATGGCTTTCATCAACTACTCCTCTTTTACCGGCTTTGACAGGACCTTTGCTGCGGGAATTCTCTATTTCATTTCATGCTTCTTTGTGCTGCTGGCCATGGCTGTCTACACTGGTATGACAGTCAACTACTATGGGAAACGTTATGGGAACTGGCGGTTCTCTTGGTCATATATAATGGGCTGGGTTTCTGTGGTGCTCACTTTCTTTTCAGGGATCTTCTATATGTGTGCTTACCGGATGCATGAACCAAGAGGACCCATGTCACGCTGATGCTTTTCAGTTCAGATCCACTACAGTCTGATCATGTCATCCCTGATCCCTTCATTTTAGAACTgtcatttatagtttattttagaaTTACAGAACTCAAATAAATGACTGATACTGAACTGCTCAATTCGTTTTTGTATATGCATACAGAAGTCTAATTtaacaaaacaacataaatattaTACATTGGTATCAAAATATGACTTACAAAATACATAgatttttatcaaatattttttaagagCCATTGATATTACTACTATAAATAATACAGGTTTAAACAAAACCTCTATTGATGTCCATacacaactcaaaaataaacattcagtCCATGAATGAAAAAAGGacaatttatagatttttttatttcacccTCATCACTCATGAATGTTTTTTGAATTTATGTGCACGATGTTACCATAGAAACATAAGTTGCTTGCCCTTACACTTAAGGTCGAAACGTCCTTTTATTGTTAacagagttttatttatttattttgctgtaaaaattacACTAACAtggaattgtaattgtattttcaataggaaacttTTGGATTTCTAGTGACGATTCTAATTTTTTAAACCGCAAAATATTATTGAAGGGATACAGTTGGATAGCAATATATTTTAGATCAAATATCCACACGTGGCTTGCCTACCACTGCATTAGCCATTCAAACAATAGGTATTGGTAAGATTTGTAATGTTCTAAAAAGAATTATATTGTATTTGATCAATAGTTCAAAATGTTATTACtatagggtgttttcacacctgaattatttagttcagttgaacGCACTGTTCGTTTTTCCTTCTTGGTGCAGTTGGtatgggcaggtgtgaatgtagcaatcacaCTCATGTGCAATTGCTACAAAATCGGACCAAAAAGTATACGAGACTTCCTTGAAGAgatggtctcggtacgctttccaACGAACCCTGAAGCGATTCATTTGTGGTAAGATCATGATCTGAACTAACGTCATgaagacccaaccgcaaaaagtactgcgcctttttggactaTTGTTAATCCAGCTGCAGTGGTCCGACGCACTGTCCTATCTTATGGGGTGTGGAGGAAAAATACTTGTCAGCgtttaccaacaattttaaacagaaagagagagagagggaaaaacattacaggatgtatcgttggtaatatttccagaGATGAGCATGTAGCAGTTAAGCTACTAATTAGTTTGCGTCTCCTCCTGAGGTGACCTGAGATGCGCCTTCatcatttgcaatgcattaaagaTTCTTTTTCAAGCCGCAGCTgc
>TCONS_00016879
ACCAGACCTGTGCCCTCACAAAAAATAACTGCCAATCGCTCATGGAAATCTGCCTGCATTGGCATAATTCAGCTTCACACTATTAAATCTGACAATATTTTTGGGAAAAGATAAAAAGCAGGAGTGGGAAACATACTCCTGGTGATCTCCACTGCCACCGATTACTGGATGCAGTACCGCCAGTCCAGCAGCTACATGCACCAGGGCCTATGGCGCTACTGTGTACCTGGAAAATGcatgacacacacagacagcattgCATACTGGGACGCCACCCGGGCCTTCATGATCCTGGCCACCTTAGCTTGTTTCTTTGGCATGATCATCGGTGTCATGGCTTTCATCAACTACTCCTCTTTTACCGGCTTTGACAGGACCTTTGCTGCGGGAATTCTCTATTTCATTTCATGCTTCTTTGTGCTGCTGGCCATGGCTGTCTACACTGGTATGACAGTCAACTACTATGGGAAACGTTATGGGAACTGGCGGTTCTCTTGGTCATATATAATGGGCTGGGTTTCTGTGGTGCTCACTTTCTTTTCAGGGATCTTCTATATGTGTGCTTACCGGATGCATGAACCAAGAGGACCCATGTCACGCTGATGCTTTTCAGTTCAGATCCACTACAGTCTGATCATGTCATCCCTGATCCCTTCATTTTAGAACTgtcatttatagtttattttagaaTTACAGAACTCAAATAAATGACTGATACTGAA
>TCONS_00016880
AGACCTGTGCCCTCACAAAAAATAACTGCCAATCGCTCATGGAAATCTGCCTGCATTGGCATAATTCAGCTTCACACTATTAAATCTGACAATATTTTTGGGAAAAGATAAAAAGCAGTGTGTGTAGGTGCAAGATGTACAGCTTTATGGGAGGTGGATTGTTTTGTGCAGGAGTGGGAAACATACTCCTGGTGATCTCCACTGCCACCGATTACTGGATGCAGTACCGCCAGTCCAGCAGCTACATGCACCAGGGCCTATGGCGCTACTGTGTACCTGGAAAATGcatgacacacacagacagcattgCATACTGGGACGCCACCCGGGCCTTCATGATCCTGGCCACCTTAGCTTGTTTCTTTGGCATGATCATCGGTGTCATGGCTTTCATCAACTACTCCTCTTTTACCGGCTTTGACAGGACCTTTGCTGCGGGAATTCTCTATTTCATTTCATGCTTCTTTGTGCTGCTGGCCATGGCTGTCTACACTGGTATGACAGTCAACTACTATGGGAAACGTTATGGGAACTGGCGGTTCTCTTGGTCATATATAATGGGCTGGGTTTCTGTGGTGCTCACTTTCTTTTCAGGGATCTTCTATATGTGTGCTTACCGGATGCATGAACCAAGAGGACCCATGTCACGCTGATGCTTTTCAGTTCAGATCCACTACAGTCTGATCATGTCATCCCTGATCCCTTCATTTTAGAACTgtcatttatagtttattttagaaTTACAGAACTCAAATAAATGACTGATACTGAA
>TCONS_00016881
CTGCATTGGCATAATTCAGCTTCACACTATTAAATCTGACAATATTTTTGGGAAAAGATAAAAAGCAGTGTGTGTAGGTGCAAGATGTACAGCTTTATGGGAGGTGGATTGTTTTGTGCAGGAGTGGGAAACATACTCCTGGTGATCTCCACTGCCACCGATTACTGGATGCAGTACCGCCAGTCCAGCAGCTACATGCACCAGGGCCTATGGCGCTACTGTGTACCTGGAAAATGcatgacacacacagacagcattgGTGAGACCAGTATACATAGACACCATATGTGGACgttacaataaaacaataagcactatgcatgggccggtataagactctgagggtatgataaccttggacataaatatcacggtttcatgttatcacggtattgagattactgctctaaatatatattcttttta

Function

symbol description
lim2.3 Predicted to be a structural constituent of eye lens. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract and cataract 19 multiple types. Orthologous to human LIM2 (lens intrinsic membrane protein 2).

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-327 Predicted to be a structural constituent of eye lens. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract and cataract 19 multiple types. Orthologous to human LIM2 (lens intrinsic membrane protein 2).

Ensembl:

ensembl_id ENSDARG00000037402

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016878 False 2501 mRNA 0.37 5 19646902 19660757
TCONS_00016879 False 722 mRNA 0.45 5 19652807 19659578
TCONS_00016880 False 772 mRNA 0.45 5 19652810 19659578
TCONS_00016881 True 426 lncRNA 0.42 2 19652860 19655026

Neighbor

gene id symbol gene type direction distance location
XLOC_008432 zgc:77784 coding upstream 44573 19456112 ~ 19602329 (+)
XLOC_008431 acad8 coding upstream 298519 19335646 ~ 19348383 (+)
XLOC_008430 vps26b coding upstream 315824 19324697 ~ 19331078 (+)
XLOC_008429 jam3a coding upstream 326287 19293744 ~ 19320615 (+)
XLOC_008428 BX324206.3 coding upstream 355525 19287632 ~ 19291377 (+)
XLOC_008434 si:dkey-4p15.5 coding downstream 20961 19681718 ~ 19688389 (+)
XLOC_008435 CR626889.1 coding downstream 28118 19688875 ~ 19721754 (+)
XLOC_008436 NA coding downstream 92124 19752881 ~ 19755818 (+)
XLOC_008437 zpld1b coding downstream 122595 19783352 ~ 19793361 (+)
XLOC_008438 si:ch211-229d2.5 coding downstream 137161 19797918 ~ 19803478 (+)
XLOC_008463 BX663520.1 misc downstream 1591434 21252191 ~ 21252282 (+)
XLOC_008427 BX324206.2 non-coding upstream 360759 19284842 ~ 19286143 (+)
XLOC_008426 NA non-coding upstream 459068 19182848 ~ 19187834 (+)
XLOC_008425 NA non-coding upstream 488994 19155890 ~ 19157908 (+)
XLOC_008423 NA non-coding upstream 854044 18788416 ~ 18792858 (+)
XLOC_008449 NA non-coding downstream 750535 20411292 ~ 20458876 (+)
XLOC_008454 CR848784.1 non-coding downstream 1236346 20897103 ~ 20901355 (+)
XLOC_008455 NA non-coding downstream 1343976 21004733 ~ 21093616 (+)

Expression


Co-expression Network