XLOC_008434 (si:dkey-4p15.5)


Basic Information

Item Value
gene id XLOC_008434
gene name si:dkey-4p15.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 19681718 ~ 19688389 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016882
GGATCTGAATCCTTATCAGTGGAAAGATCGCCGGAGGGGTTCATGTTGCGCTCCTCTTTGTCATCTTTTCTCTCACACCCTAAACCTCTGTATAAAAACCCAATCTGTCAAATCTGTAAGATAGAAGAAGCTTATCATCCAGACTTTGTGGATTCAACAGGTAATGtatgctttatttactcaaatgaagAGAGTTGTGATTTGCTGCTTTGCAATATTCTGACACATATAGTCTTTAGAACTTCAGAAGAAAAAGTTCCTTTCCTCACTGGTTTGTGTGACGGTTTTTGTCTTCTTCTGCAGATCACGTCATGATGATCAGGCTAGTGCAGCTTTTGTGTCTTTCTGGTCTGCTTCTACATTGTGAAGCTCAGGGTTTCCAATCATGCCTGGCTGACCCCACATTCAGACTAGCAGATAACTCGGATATTTCTGTGACCTGTGGAACCAATCAGATGTTTTTAAGAATCCTCCTGTGTCCGATGTATTTTGGTGGATATAATGAATCTCTAATGGCACTCAATGCCAGGTTTGGCATCCCCGACTGTCGTGGAGTAGCAGACTGGTCTTCCAGTCCTCCTGTCTTGATGTTTAACTTCTCTATCTCCCAGGAGGCTCTTCTTCTTTGTGGCAACACAATAAACATTACAAGCCAAGTGGGCTCAGGAGTATTTTCAGACTTCTCCCAAATCCAGTCGGTTAACATCTCTGGATTAATTAACGCCTGGGATCCATCCATCAGCGCCATTACTTACAGACAACAACTAACCTACCAGTTCTCCTGCGTATATCCACTGCAGTATTTAGTCAACAACACTGAGGTCAAAGTGTCAGGGGTGAGTCTGGCAGTGAAGGACAACAATGGTACTTTCGTCAGTACTCTGAGCATGACTCTTTTCACTactGCTAATTATACCACCAAACTCACGATACCTCAAACAGGACTGCAGCTGAAAACTCGCATATATGTGCAGGTCAAGGCAACAAATCTCACAAACAAGTTCAATGTGATGCTGGACCGCTGCTATGCCACAACAAGCCCATATCCAACCAGCAGCAGCTCATATGATCTATTTCTTGGGTGAGTCATTgacaaaaaaaagctaaataaaagagAGCAATTAAGAAGACACTTTAATTCTCAAGTGAGAACGACGTCTATTGTTGTTCCAAGGTGTACCCGTGACCCTCAGACAAAGGTCGACATGAATGGGATTGCACAGGAAGCTCACTTCTCCTTTGAGGCTTTTCGTTTTGTGGAGCATAAGAACTTGACCATCTCCACTTTCTACCTGCACTGTGCCACCCGACTCTGTGAGAACTCCACTTGCGCCTCTCTGTTGCCGGTAACTAGCGccgatttaatttttttcattggtTTCTTTTTAATTTGATTGTCTTTGTTTGACTCAGGTGTTTAAGGtttgtttctaaaaaaaattcaatctgtgTTGGCATCAGTGATTACATGAAGAAGCTTTAATACTTACAGAACTTTTTCATTCCACAAAAGGTTATTTATAATAGAAAAAGGTTATTTTGATAATGAAGTTATTTACACtacgaaaaaaaagaaactttttaCCAAAAGATTCTTTGGGGAAAAAGAAAATGATCTTCTAACATTATGTATTCAGTATTCAATAACAAACTATTTTATTCAACGTGACTTACAAATTAGGACAAGagcacttcaaatcatcagagaGCAGCAATTTATAGCTGCTAAAAAagtacacatacatatatatat
>TCONS_00016883
TTCTGCAGATCACGTCATGATGATCAGGCTAGTGCAGCTTTTGTGTCTTTCTGGTCTGCTTCTACATTGTGAAGCTCAGGGTTTCCAATCATGCCTGGCTGACCCCACATTCAGACTAGCAGATAACTCGGATATTTCTGTGACCTGTGGAACCAATCAGATGTTTTTAAGAATCCTCCTGTGTCCGATGTATTTTGGTGGATATAATGAATCTCTAATGGCACTCAATGCCAGGTTTGGCATCCCCGACTGTCGTGGAGTAGCAGACTGGTCTTCCAGTCCTCCTGTCTTGATGTTTAACTTCTCTATCTCCCAGGAGGCTCTTCTTCTTTGTGGCAACACAATAAACATTACAAGCCAAGTGGGCTCAGGAGTATTTTCAGACTTCTCCCAAATCCAGTCGGTTAACATCTCTGGATTAATTAACGCCTGGGATCCATCCATCAGCGCCATTACTTACAGACAACAACTAACCTACCAGTTCTCCTGCGTATATCCACTGCAGTATTTAGTCAACAACACTGAGGTCAAAGTGTCAGGGGTGAGTCTGGCAGTGAAGGACAACAATGGTACTTTCGTCAGTACTCTGAGCATGACTCTTTTCACTactGCTAATTATACCACCAAACTCACGATACCTCAAACAGGACTGCAGCTGAAAACTCGCATATATGTGCAGGTCAAGGCAACAAATCTCACAAACAAGTTCAATGTGATGCTGGACCGCTGCTATGCCACAACAAGCCCATATCCAACCAGCAGCAGCTCATATGATCTATTTCTTGGGTGTACCCGTGACCCTCAGACAAAGGTCGACATGAATGGGATTGCACAGGAAGCTCACTTCTCCTTTGAGGCTTTTCGTTTTGTGGAGCATAAGAACTTGACCATCTCCACTTTCTACCTGCACTGTGCCACCCGACTCTGTGAGAACTCCACTTGCGCCTCTCTGTTGCCGaaATGTGCGAGGAAAAGAAACGTACGATCCATAGATTACAATGCTAGTGATGTGGCCACAGTTTCTTCAGGACCAATCAGGACCAGAGTTGACAACGGTGGCCTTGCGAGTAGACTGACCTCATCCTCTTCGATCCCTCAGCTGACGTATGCTGGTGCTGCCACTGGTTTGCTGAGTGTCCTTCTACTCAACTGGCTGTCTGGATCAGGACCTGCATGGTGATCTACAGTACATCAAGATTTGGGAATTTGTTGTCATTTAATGGAATATTGCCTTGGAAAATCTCTCATGCCTTACGGGAATGTGAGACAACAGGCTATATGTATCAGTTATCAGCATCTGTATTTTACAACTTATTGTAGGAATCTAgtctaatgtaatttactgtaattagacttttttgtaattgtgttgaattttttggttgtttttattaaagtctaTTGAGCATGCAGTGCTGCTCTTGGGGTACGTTTATGCACTAAGTATGTAACAGTTTAACATTTCAACTTAATAGCCTTTGGTATTTTCTCTCATTCAGTTAATATAGATTTCGTAATATATCATTTATAAGCAGCTACAtgtaatgcaaataaaataaacctcTGTACAGGattaatgcaataaaaatgaatgcaaaaaaaatgttcaaagtcTTTATTAGACTCTGCTGTATTCTAATTTTACTCGGC

Function

symbol description
si:dkey-4p15.5 Predicted to be an extracellular matrix structural constituent. Predicted to be active in cell surface and extracellular space.

GO:

id name namespace
GO:0005615 extracellular space cellular_component
GO:0009986 cell surface cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-193 Predicted to be an extracellular matrix structural constituent. Predicted to be active in cell surface and extracellular space.

Ensembl:

ensembl_id ENSDARG00000086272

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016882 False 1753 mRNA 0.40 6 19681718 19686445
TCONS_00016883 True 1650 mRNA 0.42 10 19682013 19688389

Neighbor

gene id symbol gene type direction distance location
XLOC_008433 lim2.3 coding upstream 20961 19646902 ~ 19660757 (+)
XLOC_008432 zgc:77784 coding upstream 79389 19456112 ~ 19602329 (+)
XLOC_008431 acad8 coding upstream 333335 19335646 ~ 19348383 (+)
XLOC_008430 vps26b coding upstream 350640 19324697 ~ 19331078 (+)
XLOC_008429 jam3a coding upstream 361103 19293744 ~ 19320615 (+)
XLOC_008435 CR626889.1 coding downstream 486 19688875 ~ 19721754 (+)
XLOC_008436 NA coding downstream 64492 19752881 ~ 19755818 (+)
XLOC_008437 zpld1b coding downstream 94963 19783352 ~ 19793361 (+)
XLOC_008438 si:ch211-229d2.5 coding downstream 109529 19797918 ~ 19803478 (+)
XLOC_008439 alcamb coding downstream 150069 19838458 ~ 19878987 (+)
XLOC_008463 BX663520.1 misc downstream 1563802 21252191 ~ 21252282 (+)
XLOC_008428 BX324206.3 non-coding upstream 390341 19287632 ~ 19291377 (+)
XLOC_008427 BX324206.2 non-coding upstream 395575 19284842 ~ 19286143 (+)
XLOC_008426 NA non-coding upstream 493884 19182848 ~ 19187834 (+)
XLOC_008425 NA non-coding upstream 523810 19155890 ~ 19157908 (+)
XLOC_008423 NA non-coding upstream 888860 18788416 ~ 18792858 (+)
XLOC_008449 NA non-coding downstream 722903 20411292 ~ 20458876 (+)
XLOC_008454 CR848784.1 non-coding downstream 1208714 20897103 ~ 20901355 (+)
XLOC_008455 NA non-coding downstream 1316344 21004733 ~ 21093616 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_00797990_00802827 NA coding CI01000053 null 797707 ~ 803060 (-)