XLOC_008438 (si:ch211-229d2.5)


Basic Information

Item Value
gene id XLOC_008438
gene name si:ch211-229d2.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 19797918 ~ 19803478 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016889
GTGGGAGTTAGTTAAAACGGAAAGGATACATTCAGGAGCTTATCAAGATTTTTGGACATTGATGAAGAGCATGGTTGACATGGTTCTGCTCAGACTCTTGATTTTGGGTACGCTGGTTCAGCCTGGCTATCTGGGTCTTACTCCTGCTAGCTGTGGGAATAATTACAGGCGTCCagAAATCACCGACATTGGCGTAAGTTGCGGGACAAATTCTATAAATTTGGCAATTCAGGCTTGCCCGGTCGTTTACAGCGGATATAACGAGACCCTGCTGATCCTGAATCAAATCGCAAATGACCCGTTGTGTCAGGGGACGCTGGATGCGAACGTGACTCCTCCGGTTGTGCGCTTCGTCTTCCCGATCAGACAACTAGACTCCTGTGGCAGTTTCTTCCGCACCACCAGCGCTGCAGGCACCGGGGCCTTCTCGGATTTCTCCAACATCCAGACGGTGTACATCAGTGGGGTGGTCCGCTCTTTCGACCCCACAATGGGAACAGTGACCTACAATGCCGAACTGAAGTATATTTACTCCTGTGCTTATCCACTCGAGTACCTGATCAACAACACACAAGTTGATGTGTCAGCCTCCTCTATTGCAGTGAGGGACAACAATGGTAGCTTCATCAGCACTTTAAGCATGCAGCTGTACAAAGATATAAACTACACCACTCCCCTTGTTTTTCCGAATGGGGGTATTGAGCTCAGAACCCGAATCTTTGTGCAAGTCATTGCAGTAAACTTGACTTCACAGTATTATGTTCTGCTGGATCGATGCTACGCCTCCATCTCTCCTGTACCCTCCAATTCAACCTATTTCAATCTCTTTGTCCCGTGCAATCAGGACCCAATGACCAGCATGCTGGAGAATGGAGAGAGTCAGAGAGCTCGATTCAGCTTTCCGGCTTTCCGCTTCATCGAGCAGCAGAACCAGACAGTCTCCACCTACTACCTGCACTGCATCACCAGACTCTGTGAAACCACCACCTGCCCCACGTTCAAGCAATGCAGGAAGAGGAAGAGAAGAGAAGTCCAGACCACAACAATTAAAGATGGCGTTTCAGACGCCACATTCATCACCTCAGGACCAATCACAACTCGAGCAGACACCCGTATGATTCTCTTTTAAATTTCACATATCACAGTTATTGTCATATTTATGTTTGCCAactgacgcagtggcgcagaaagttcgctggttcgagcag

Function

symbol description
si:ch211-229d2.5 Predicted to be an extracellular matrix structural constituent. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and extracellular space.

GO:

id name namespace
GO:0005615 extracellular space cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-200 Predicted to be an extracellular matrix structural constituent. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and extracellular space.

Ensembl:

ensembl_id ENSDARG00000079119

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016889 True 1208 mRNA 0.48 8 19797918 19803478

Neighbor

gene id symbol gene type direction distance location
XLOC_008437 zpld1b coding upstream 4557 19783352 ~ 19793361 (+)
XLOC_008436 NA coding upstream 42100 19752881 ~ 19755818 (+)
XLOC_008435 CR626889.1 coding upstream 76164 19688875 ~ 19721754 (+)
XLOC_008434 si:dkey-4p15.5 coding upstream 109529 19681718 ~ 19688389 (+)
XLOC_008433 lim2.3 coding upstream 137161 19646902 ~ 19660757 (+)
XLOC_008439 alcamb coding downstream 34980 19838458 ~ 19878987 (+)
XLOC_008440 dyrk1ab coding downstream 80764 19884242 ~ 19896816 (+)
XLOC_008441 thap12b coding downstream 96719 19900197 ~ 19908909 (+)
XLOC_008442 map6b coding downstream 111867 19915345 ~ 19926759 (+)
XLOC_008443 zgc:112083 coding downstream 186590 19990068 ~ 20003872 (+)
XLOC_008463 BX663520.1 misc downstream 1448713 21252191 ~ 21252282 (+)
XLOC_008428 BX324206.3 non-coding upstream 506541 19287632 ~ 19291377 (+)
XLOC_008427 BX324206.2 non-coding upstream 511775 19284842 ~ 19286143 (+)
XLOC_008426 NA non-coding upstream 610084 19182848 ~ 19187834 (+)
XLOC_008449 NA non-coding downstream 607814 20411292 ~ 20458876 (+)
XLOC_008454 CR848784.1 non-coding downstream 1093625 20897103 ~ 20901355 (+)
XLOC_008455 NA non-coding downstream 1201255 21004733 ~ 21093616 (+)
XLOC_008456 NA non-coding downstream 1214171 21017649 ~ 21037778 (+)
XLOC_008457 NA non-coding downstream 1360557 21164035 ~ 21164573 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_00733357_00737206 NA coding CI01000053 null 733315 ~ 737327 (-)