XLOC_008442 (map6b)


Basic Information

Item Value
gene id XLOC_008442
gene name map6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 19915345 ~ 19926759 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016895
gatgtgtgtgtgtcagtgttgaAATGGTTAAATGAGCGGCGTCTCCACCCGAAGCTGACCAGACGCTGACGGCTGCAGGTGATAGTTCACTCCGCAGACCACCAGAAGCACGAGAGAACCGGGGCGGTGTCTGGTCATACAGCTGCTAATGAAGTCTGCAGGTGTCTTCTTTTTTAACACGGAGATCTTTCGTTTGCATCTGTAACTGACAGAAAACAATCACATCGCCGCTGTCGAGAGAAGTGCGCAAGCGCGTGCGCTGCGAAAACAGGGAATTTCGAGATTCTGGAAGGATTTTTGCATCGCTAGGAGAATTTAAAGAGAGGAACCTTGTCGGCTTGATTGTAAATTCGATCTGAGACGTCCTATTCCTAATTTCGGAATCGTTTCTCTTCAGATTTAAGCTTTCGCCTCGCCGTTATCGATCATGGCATGGCCCTGTATCACCAGGGCTTGCTGCATCAACCGCTTCTGGAGCGAGCTGGACAAAGGTGACATTGCAGTGCCTTTGGTTTTCACCAAATATTCAGATGTGGCCGAGGTGCAACATCTGCACCCCCAGCCCAAACCGGTATTGTCACAGAAGCCGGTGGCCACGGAATCTCATCTTGCTCATAGCGCCCATCAAGAGGCGTCGAGCAGAGCGACTCATGGCGCCGCGGATGCCGCCGCAGCAGCATCTCAAGACGGCTCCGGTGCGTCGGTGATGCGCGAGGATTTCAAAGCCTGGAGCGTCCGTCCAGAGCGCAGCTGCAAACCCAGAAACCAGTATCAGCCATCAAAGACACCCTTCATCAACGAGACCCAGTATCAGAAAGATTACAAACCCTGGCCCATTCCGAAAAAAGGAGATCATCCGTGGATCCCCAAACCCACTGCTGCTGCTGCGCCCTGCAAGGCTGAGAGCAAGTTCTCCAAACACGAGCAGGCCGCTGCTGAGATGGAAACCGGCGTGGAGAAATGTGAGATTGAGGAAAAGCAGCACGAGAAAGAGAGTAAAGAGAGGAGAAAGAAGGTGGAGAAGAAAGAGCCCGTGTCTGAGGCCAGCAAAATGGAGAAGGATGTTGCGGTGGAGGGAAAGAGGAGGTCCGCTGCAGATGCTCTTAACCGGCAGATCAAGCAGGAGGTCACTTCTGGAAGCTCATATAGGACGGAGTTTAAGGCTTACAGAGACATCAAGCCAGTGAAACCCATTAAAGCAAAATCTCAGTACAAACTCCTAGTGGGGGAAAAGACCAACCTGGAGACAAGTTATAGTGCCACCTTTAAAGGAGAACAGGCCAAACCTCAGACCACAGACAACAAGCTGATGGAACACCGCCGGATACGGAGCCTGTACAGCGAACCGAGCAAAGAGTCCAGCAAGGTGGAGAGGCATAATTTATCACTTACCAAGCCAAAAAAGACACCAAGCCATAGCAAAACAGTGAAAAAAGCAAAGGAGAAGCCTGTCGCTGGGAGCCAACCTGCCAAGAAGAAAACCTCAGTGAGCAACCAGGAGCCAAAGCCAGAGGGAGGCGTCACCAAGAAGAGCAAAGAAATGATCAACAGACTAGCTGAGGCAAAAGATTAAGTGCACTTTTGTGtttcttttctgtcttttatttttgGGCAGAGGGGTTGAGGAGGCTATAATACAGAATAGAGGACTCTCATCCCCTTGTTCATGACCTTAATCTAATGGCCTGACTCTGATGGTGTCTTTACCTATGTATTGTAGTGGATCAAGGCTTGTCTGCTTGATTTGTCTTGACTTGTCTGGTCTATTCTGAATCTATCTTTGCTTTCGCCCCGCGTCTGCTCCCTTTTCCATACACATCAATAGCTTTTCTCTGTGGCAAAGATGATTCACCCATTCCCTAATGCATGCGGCCCCTGAACAAATGGCCTTATTATATGAAATAaggttttttctttcttctgcatTGGAAGATAGTTATTGCAGACAAGATCGGTTGTTTTCTTTCGTCAAGCAATCTCATTTAATGTGACTTTGAAGTATATGGATCACTTGAGTTACCATTGTCGCCATGAGACATCTAAAGataaacaatatatacagtatatataaaattCTGACTACACTGAATATGGCGCATTGTGAACAAAAAACCTTCTTGTTTTGGTTATGACACAAATCTGATGAAAATTATTTGGTGCTTTATCATATCCAGTATTGACCGATGCTTCTGTGGCGCGAACGACAATGGTCACGTTTGGTGTTAGGCCCAAATATAGAGTTTAGTGCAGTGTTTCCAAACTCTTTTCCTGGAAGTACACCAACTttgcatattttgg
>TCONS_00016896
ATGGCATGGCCCTGTATCACCAGGGCTTGCTGCATCAACCGCTTCTGGAGCGAGCTGGACAAAGGTGACATTGCAGTGCCTTTGGTTTTCACCAAATATTCAGATGTGGCCGAGGTGCAACATCTGCACCCCCAGCCCAAACCGGTATTGTCACAGAAGCCGGTGGCCACGGAATCTCATCTTGCTCATAGCGCCCATCAAGAGGCGTCGAGCAGAGCGACTCATGGCGCCGCGGATGCCGCCGCAGCAGCATCTCAAGACGGCTCCGGTGCGTCGGTGATGCGCGAGGATTTCAAAGCCTGGAGCGTCCGTCCAGAGCGCAGCTGCAAACCCAGAAACCAGTATCAGCCATCAAAGACACCCTTCATCAACGAGACCCAGTATCAGAAAGATTACAAACCCTGGCCCATTCCGAAAAAAGGAGATCATCCGTGGATCCCCAAACCCACTGCTGCTGCTGCGCCCTGCAAGGCTGAGAGCAAGTTCTCCAAACACGAGCAGGCCGCTGCTGAGATGGAAACCGGCGTGGAGAAATGTGAGATTGAGGAAAAGCAGCACGAGAAAGAGAGTAAAGAGAGGAGAAAGAAGGTGGAGAAGAAAGAGCCCGTGTCTGAGGCCAGCAAAATGGAGAAGGATGTTGCGGTGGAGGGAAAGAGGAGGTCCGCTGCAGATGCTCTTAACCGGCAGATCAAGCAGGAGGTCACTTCTGGAAGCTCATATAGGACGGAGTTTAAGGCTTACAGAGACATCAAGCCAGTGAAACCCATTAAAGCAAAATCTCAGTACAAACTCCTAGTGGGGGAAAAGACCAACCTGGAGACAAGTTATAGTGCCACCTTTAAAGGAGAACAGGCCAAACCTCAGACCACAGACAACAAGCTGATGGAACACCGCCGGATACGGAGCCTGTACAGCGAACCGAGCAAAGAGTCCAGCAAGAGGCATAATTTATCACTTACCAAGCCAAAAAAGACACCAAGCCATAGCAAAACAGTGAAAAAAGCAAAGGAGAAGCCTGTCGCTGGGAGCCAACCTGCCAAGAAGAAAACCTCAGTGAGCAACCAGGAGCCAAAGCCAGAGGGAGGCGTCACCAAGAAGAGCAAAGAAATGATCAACAGACTAGCTGAGGCAAAAGATTAA

Function

symbol description
map6b Predicted to enable microtubule binding activity. Predicted to be involved in cytoskeleton-dependent intracellular transport and regulation of microtubule cytoskeleton organization. Predicted to act upstream of or within microtubule cytoskeleton organization. Predicted to be located in cytoplasm. Predicted to be active in Golgi-associated vesicle; cis-Golgi network; and microtubule. Orthologous to human MAP6 (microtubule associated protein 6).

GO:

id name namespace
GO:0070507 regulation of microtubule cytoskeleton organization biological_process
GO:0030705 cytoskeleton-dependent intracellular transport biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005798 Golgi-associated vesicle cellular_component
GO:0005801 cis-Golgi network cellular_component
GO:0005874 microtubule cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-741 Predicted to enable microtubule binding activity. Predicted to be involved in cytoskeleton-dependent intracellular transport and regulation of microtubule cytoskeleton organization. Predicted to act upstream of or within microtubule cytoskeleton organization. Predicted to be located in cytoplasm. Predicted to be active in Golgi-associated vesicle; cis-Golgi network; and microtubule. Orthologous to human MAP6 (microtubule associated protein 6).

Ensembl:

ensembl_id ENSDARG00000074073

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016895 False 2298 mRNA 0.47 3 19915345 19926759
TCONS_00016896 True 1140 mRNA 0.52 3 19915772 19926034

Neighbor

gene id symbol gene type direction distance location
XLOC_008441 thap12b coding upstream 6436 19900197 ~ 19908909 (+)
XLOC_008440 dyrk1ab coding upstream 18529 19884242 ~ 19896816 (+)
XLOC_008439 alcamb coding upstream 36358 19838458 ~ 19878987 (+)
XLOC_008438 si:ch211-229d2.5 coding upstream 111867 19797918 ~ 19803478 (+)
XLOC_008437 zpld1b coding upstream 121984 19783352 ~ 19793361 (+)
XLOC_008443 zgc:112083 coding downstream 63309 19990068 ~ 20003872 (+)
XLOC_008444 spint2 coding downstream 312382 20239141 ~ 20250516 (+)
XLOC_008445 plekhg2 coding downstream 354546 20281305 ~ 20352045 (+)
XLOC_008446 il15l coding downstream 425364 20352123 ~ 20363786 (+)
XLOC_008447 supt5h coding downstream 437100 20363859 ~ 20395249 (+)
XLOC_008463 BX663520.1 misc downstream 1325432 21252191 ~ 21252282 (+)
XLOC_008436 NA non-coding upstream 159527 19752881 ~ 19755818 (+)
XLOC_008435 CR626889.1 non-coding upstream 193591 19688875 ~ 19721754 (+)
XLOC_008428 BX324206.3 non-coding upstream 623968 19287632 ~ 19291377 (+)
XLOC_008427 BX324206.2 non-coding upstream 629202 19284842 ~ 19286143 (+)
XLOC_008426 NA non-coding upstream 727511 19182848 ~ 19187834 (+)
XLOC_008449 NA non-coding downstream 484533 20411292 ~ 20458876 (+)
XLOC_008454 CR848784.1 non-coding downstream 970344 20897103 ~ 20901355 (+)
XLOC_008455 NA non-coding downstream 1077974 21004733 ~ 21093616 (+)
XLOC_008456 NA non-coding downstream 1090890 21017649 ~ 21037778 (+)
XLOC_008457 NA non-coding downstream 1237276 21164035 ~ 21164573 (+)

Expression


Co-expression Network