XLOC_008448 (cox7a1)


Basic Information

Item Value
gene id XLOC_008448
gene name cox7a1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 20403084 ~ 20405796 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016914
TTCAGAAGTtctgcaatatgtgtgtgtgtgtccttgtaAGGGCCTCGACTAGACGCGAATCAACAAGCATAACAGAGAGCAGCATCGGACATGAGGCATTTACTGGGACTTCCACAGCTGGCTTCACGAGCCTTCAGCACAACAGTCCGACAAATGAAGAACAGGGTGCCGGAGAAACAGAAAATTTTCCTGGAGGATAATGGTCTGCCTGTCCACATTAAAGGAGGCACAACAGATGCAATTCTGTACCGTCTGACCATGACCCTCACAGTAGTAGGCACTGGCTACTCCCTTTACTGGTTGCTGATCGCTGCTATGCCCAAACGTAAAGCATAATTCCTCTCATGCTCCATGATTCTGTATAAATCCATTTTATTTCAAAAACCTTTAACAATAAAACATGTGTAATTAAGTTCTACAATTTGGTCTTTTtcatataattgtttttacaggATATCACTACCACTCAAACAACTGGGGTGTCTaatgtttgaaataaatatttgtgtACTTATATAGTTACTTGTGCACACAAGTTTTGCACTTTATTTCCCAAATTTTATCATTTGCTATAacatatgctgatttgctgttcaacaaacattatttaaatgtgtatttgtttACCTAAAAATTACTTGTGCCTGAACTTACTTTACTAAATaataaattcagttttattttcccCCTTA
>TCONS_00016915
GACTAGACGCGAATCAACAAGCATAACAGAGAGCAGCATCGGACATGAGGCATTTACTGCTGGCTTCACGAGCCTTCAGCACAACAGTCCGACAAATGAAGAACAGGGTGCCGGAGAAACAGAAAATTTTCCTGGAGGATAATGGTCTGCCTGTCCACATTAAAGGAGGCACAACAGATGCAATTCTGTACCGTCTGACCATGACCCTCACAGTAGTAGGCACTGGCTACTCCCTTTACTGGTTGCTGATCGCTGCTATGCCCAAACGTAAAGCATAATTCCTCTCATGCTCCATGATTCTGTATAAATCCATTTTATTTCAAAAACCTTTAACAATAAAACATGTGTAATTAAGTTC
>TCONS_00016916
ATTACTTTTAGAcatttaacttaacttaacttaagatGTTCTACTTAACTATCTTTATGCATGTTACAAACATTTAAAGTAGATTGCTATCTGAGGAAAGCAGACCCTCTTCATGTATATAATCACAATATTTACGCTTGAAGTTgcttaacctttttttttaggtCTGAGAGAACAAAAAGATGATGATAAAAGAAGTTAAAATATTTGTACTTGACATTGACATATTGATTGATACTTGACGACTTAGCCTAAAAAAAGGACTTCCACAGCTGGCTTCACGAGCCTTCAGCACAACAGTCCGACAAATGAAGAACAGGGTGCCGGAGAAACAGAAAATTTTCCTGGAGGATAATGGTCTGCCTGTCCACATTAAAGGAGGCACAACAGATGCAATTCTGTACCGTCTGACCATGACCCTCACAGTAGTAGGCACTGGCTACTCCCTTTACTGGTTGCTGATCGCTGCTATGCCCAAACGTAAAGCATAATTCCTCTCATGCTCCATGATTCTGTATAAATCCATTTTATTTCAAAAACCTTTAACAATAAAACATGTGTAATTAAGTT

Function

symbol description
cox7a1 Predicted to enable cytochrome-c oxidase activity. Predicted to be involved in mitochondrial respirasome assembly and regulation of oxidative phosphorylation. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrial respirasome. Orthologous to human COX7A2 (cytochrome c oxidase subunit 7A2).

GO:

id name namespace
GO:0002082 regulation of oxidative phosphorylation biological_process
GO:0097250 mitochondrial respirasome assembly biological_process
GO:0005746 mitochondrial respirasome cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-340 Predicted to enable cytochrome-c oxidase activity. Predicted to be involved in mitochondrial respirasome assembly and regulation of oxidative phosphorylation. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrial respirasome. Orthologous to human COX7A2 (cytochrome c oxidase subunit 7A2).

Ensembl:

ensembl_id ENSDARG00000069464

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016914 False 692 mRNA 0.38 4 20403084 20405796
TCONS_00016915 False 358 mRNA 0.44 4 20403130 20405520
TCONS_00016916 True 570 mRNA 0.36 4 20403903 20405519

Neighbor

gene id symbol gene type direction distance location
XLOC_008447 supt5h coding upstream 7835 20363859 ~ 20395249 (+)
XLOC_008446 il15l coding upstream 39298 20352123 ~ 20363786 (+)
XLOC_008445 plekhg2 coding upstream 51039 20281305 ~ 20352045 (+)
XLOC_008444 spint2 coding upstream 152568 20239141 ~ 20250516 (+)
XLOC_008443 zgc:112083 coding upstream 399212 19990068 ~ 20003872 (+)
XLOC_008449 NA coding downstream 5496 20411292 ~ 20458876 (+)
XLOC_008450 tnfaip1 coding downstream 123401 20529197 ~ 20541185 (+)
XLOC_008451 sgsm2 coding downstream 137974 20543770 ~ 20643827 (+)
XLOC_008452 aldh3a1 coding downstream 394147 20799943 ~ 20809124 (+)
XLOC_008453 ulk2 coding downstream 437365 20843161 ~ 20894776 (+)
XLOC_008463 BX663520.1 misc downstream 846395 21252191 ~ 21252282 (+)
XLOC_008436 NA non-coding upstream 647266 19752881 ~ 19755818 (+)
XLOC_008435 CR626889.1 non-coding upstream 681330 19688875 ~ 19721754 (+)
XLOC_008428 BX324206.3 non-coding upstream 1111707 19287632 ~ 19291377 (+)
XLOC_008427 BX324206.2 non-coding upstream 1116941 19284842 ~ 19286143 (+)
XLOC_008426 NA non-coding upstream 1215250 19182848 ~ 19187834 (+)
XLOC_008454 CR848784.1 non-coding downstream 491307 20897103 ~ 20901355 (+)
XLOC_008455 NA non-coding downstream 598937 21004733 ~ 21093616 (+)
XLOC_008456 NA non-coding downstream 611853 21017649 ~ 21037778 (+)
XLOC_008457 NA non-coding downstream 758239 21164035 ~ 21164573 (+)

Expression


Co-expression Network