XLOC_008452 (aldh3a1)


Basic Information

Item Value
gene id XLOC_008452
gene name aldh3a1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 20799943 ~ 20809124 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016928
GCTGGCTTGACCGCAGTATAAATGCGGCTCTTTTGCTCCGGGTCTCCGCTACGTCACCTCAATGGAGCCGTCACAAACACCCCAAACAGCGTTCCTGTTCTGAAAACAGTTACGAACTGTTTTATGAAATTCCTAATTCAGACCTGTACAAATGGAGAAGCAGGTTGTAGATGGATTAAGGGAGGTCTTCCAGTCAGGCAGATCCAGACCCCTGCAGTACAGAAAACAGCAGCTTAGAGCTCTGCTCCGGCTCATCACTGAACGCCATGCAGACATTGAACAAGCTCTAAAGCAAGACCTTAACAGGAGTATGCATGGCACTTCACTCTTTGAGTTGATCGGCATTGAGAATGACATCAAGGTGGCAGAGCGTGAGATGACAGAGTGGGCAGCTCCTCGGCCTGTGAAGAAGAATCTCAACTCCGCACTTGATGATGTTTACGTAAAGCCTGAACCTTTAGGTGTTGTGTTGATTATTGGAACCTGGAACTATCCTTGGGCCATGATCTTTCAGCCCCTTGTTGGAGCTATTGCAGCTGGAAATGCGGCTGTGGTGAAGCCATCAGAGCTGAGTGAGCACTCTTCTAGACTAATGAAAGAGCTGCTTCCTCTCTATCTGGATAAGGAGATGTATCAGGTGGTGACAGGAGGGGTTCCAGAGACCCAGGAGCTGCTGAAGCAGCGTTTTGACCACATCTTCTACACTGGAAGCAGCACAGTGGGCAAACTGGTTATGGAAGCAGCTTCTCGTCACCTCACACCAGTCACTTTAGAACTGGGTGGAAAAAGCCCCTGTTATATTGACAAGAACTGTGACATTGCTGTGGCGTGCCGACGAATAACCTGGGGAAAGTTTGCAAACTGTGGCCAGACATGCATTGCCCCTGACTACATTCTGTGTGAGCCAAGCATCCAGGACAGGATAGTTGAAGAAATTCAGAAGACACTTCTGGAGTTCTACCAGACGGACCCTAAAAGCTCTCCAGATTATTGCAGAATCATTAACACACGTCACTTTGACAGAGTATTGGCTCTGATGAATGAATGCACCATTGCTTTGGGAGGAGAAAATGATCGCTCACAGTGTTACATAGCTCCTACAGTCCTGAAAGATGTTTTGCCCCATTTCAAAATCATGCAAGAAGAAATCTTTGgacccctgctgcccattgtcaCTGTTAATGGCTTGAGTGAGGCCATAAATTTTATCAATGCTAGAGAAAAGCCTTTGGCTCTCTATATTTTCTCCTCTGATAAAACGGTGATAAAGAGAATGTTAAAGGAAACCACCAGTGGAGGAGTGACTGTTAATGATGTCCTTATGCATTACACTGTTGATACTTTACCTTTTGGAGGCGTGGGAAACAGTGGAATGGGCAGATATCATGGGAAACACACGTTTGACCAGCTGAGCCACCATCGTGCCTGCCTCATCAAGTCTTTTGCTATGGAGAGTTTGAACGATGCCCGTTACCCTCCACTAACAACAGCCCGTCTGCGCAAGGCCAAGTTTTTTATGGGGCATCGCATGTGTAGCTGTAATGGCATGTGTGTTTGGGCTGTCATCGCCACCGTACTTGCAATTGGCCTGCTTGTTGGACTATTAGTTGTGCTGATATAGGTAAAggattttattgtatttactatCACATTGTAGAAATAGTTTCAAGGGTTGATTTTGTGTTTGCACTATGCTCACATTTTATTACAGTCTCAGGAGGATGGCAAACCCTAGAGCATTTTAGGGAAGAAAGTCTGAACATTGACTCGCCCTCAGGCAATCTAATGTTGTTGATGTTTTTCTTCATTGAATATTTTTTGATGAAA
>TCONS_00016929
GAAATTCCTAATTCAGACCTGTACAAATGGAGAAGCAGGTTGTAGATGGATTAAGGGAGGTCTTCCAGTCAGGCAGATCCAGACCCCTGCAGTACAGAAAACAGCAGCTTAGAGCTCTGCTCCGGCTCATCACTGAACGCCATGCAGACATTGAACAAGCTCTAAAGCAAGACCTTAACAGGAGTATGCATGGCACTTCACTCTTTGAGTTGATCGGCATTGAGAATGACATCAAGGTGGCAGAGCGTGAGATGACAGAGTGGGCAGCTCCTCGGCCTGTGAAGAAGAATCTCAACTCCGCACTTGATGATGTTTACGTAAAGCCTGAACCTTTAGGTGTTGTGTTGATTATTGGAACCTGGAACTATCCTTGGGCCATGATCTTTCAGCCCCTTGTTGGAGCTATTGCAGCTGGAAATGCGGCTGTGGTGAAGCCATCAGAGCTGAGTGAGCACTCTTCTAGACTAATGAAAGAGCTGCTTCCTCTCTATCTGGATAAGGAGATGTATCAGGTGGTGACAGGAGGGGTTCCAGAGACCCAGGAGCTGCTGAAGCAGCGTTTTGACCACATCTTCTACACTGGAAGCAGCACAGTGGGCAAACTGGTTATGGAAGCAGCTTCTCGTCACCTCACACCAGTCACTTTAGAACTGGGTGGAAAAAGCCCCTGTTATATTGACAAGAACTGTGACATTGCTGTGGCGTGCCGACGAATAACCTGGGGAAAGTTTGCAAACTGTGGCCAGACATGCATTGCCCCTGACTACATTCTGTGTGAGCCAAGCATCCAGGACAGGATAGTTGAAGAAATTCAGAAGACACTTCTGGAGTTCTACCAGACGGACCCTAAAAGCTCTCCAGATTATTGCAGAATCATTAACACACGTCACTTTGACAGAGTATTGGCTCTGATGAATGAATGCACCATTGCTTTGGGAGGAGAAAATGATCGCTCACAGTGTTACATAGCTCCTACAGTCCTGAAAGATGTTTTGCCCCATTTCAAAATCATGCAAGAAGAAATCTTTGgacccctgctgcccattgtcaCTGTTAATGGCTTGAGTGAGGCCATAAATTTTATCAATGCTAGAGAAAAGCCTTTGGCTCTCTATATTTTCTCCTCTGATAAAACGGTGATAAAGAGAATGTTAAAGGAAACCACCAGTGGAGGAGTGACTGTTAATGATGTCCTTATGCATTACACTGTTGATACTTTACCTTTTGGAGGCGTGGGAAACAGTGGAATGGGCAGATATCATGGGAAACACACGTTTGACCAGCTGAGCCACCATCGTGCCTGCCTCATCAAGTCTTTTGCTATGGAGAGTTTGAACGATGCCCGTTACCCTCCACTAACAACAGCCCGTCTGCGCAAGGCCAAGTTTTTTATGGGGCATCGCATGTGTAGCTGTAATGGCATGTGTGTTTGGGCTGTCATCGCCACCGTACTTGCAATTGGCCTGCTTGTTGGACTATTAGTTGTGCTGATATAGGTAAAggattttattgtatttactatCACATTGTAGAAATAGTTTCAAGGGTTGATTTTGTGTTTGCACTATGCTCACATTTTATTACAGTCTCAGGAGGATGGCAAACCCTAGAGCATTTTAGGGAAGAAAGTCTGAACATTGACTCGCCCTCAGGCAATCTAATGTTGTTGATGTTTTTCTTCATTGAATATTTTTTGATGAAACAGTGCTCCTGAGTGATTCATAAAATCAACTGCTATTgccgttgttattattattattatttttacttttaaagagCTCAGCTGTTGACCTGACTTTTCTGAATAGCCAAGGATCTGTTTTAGCTGAAATCTTCATCAATTTTGTAAAGGCACTATACAGTATTTTTGGGTACAGTAacatgaagtttttatatttgtgtGAGTTATTTCTTTAAGATAAATTTATGTTCCTATACTGTAAAACGCGATTAGTACAATTAACGCAAAACTGTTTGAGGTAAccgattgcagcaaaccatttaagttttgaaacaatatggtttgagtactgtaaactatATGACTATGACAATATATAGAGTCATATACACACTTTACATTTACGTTACATTTGAGTTAATAATCTGTGTTGAGTATTaacaacttaaacattttaagttcagttatCAAATTGCTATAAGTTCAAAAAATTAAGTCCAAACAACTATATGCTCAGATGGTTTGGTATTGCTCCTAGTTTTAGAGTTATGTTgacacaaaaatataattatgtcattcataactcattcgtagggccaaacagaatctgcagaatattttttgctatttctgtggagaattttgttaaaaatctgcgcaTTTatgctaaatgattttgagactATCATagctaaaaaatgtatatatgaagtaagtaaaaaaacattttcaattttcatttattgttaacaatgcaaatccaatcagatccactttatttggtaaacatagcaagtctcttataatatatctacttaaagactgaaaatattactttacaaactgtattgtgaatgAATCATGTCAACATTGTCATGTTTgtcaatataaaaatgaaattattttaaatcagaaaaaatatacatgtacacatttattcaagtaaataaacagagtcaatgatgggctaaaaatctgcggaagtCTACGCGCACCGATTCCGTGTTGGCCTACCCATTCGTTTTGAGTTCTGCTTAAAATAATCCATTTATATGTTTcgtaaagtaacatttaaaaaaaagtataagtTTAACTTATTTAAgcctttgatgcacaagctataaaatagaaatagaaaaaataaacttagAGGGATCACTTTAGACCCAagtagtgcatcaaagggttaatttAGTAAATTGTGACTCTTAGGTTTTACAGAAAACAAAGAACATCATCAGAGTACTAACAATGGTATGGCTATACtagattgaattatttttatttagttttgttatttcatatttatgcattttataaatacagtaatggTTTTCCAGTTTGTTGAGGAAAGCCATGTGATTGAACTGTCACGGTTTGTCTGTTTGGTTAATGAGTATTTCTCAAAAGGCCACTGTTTGGATCAAGCTTTGTTTAATAACTGAAATTTCCCATTGCTCTAACAACGAATGATTGTTCATAATCAGTGTTCCTTCACTTCTACAGCAGACTCCTATCTGAAGCAACAGATCTACTGGATACACTGTTGTTCTTTATATTTGCTGCTGTCTTTTGATATGATATAGTATTTTTGGAtcatatatttgtataaatattgaGTATTTAGATCGTTCTTATGATCCATCTGTAAGAGCTTATGCGTTTAAACCACTAGATGATAAAACTGCAGCacacatttataataaattattgctTGTTGGTGTAGACGCTAATTTACTGTAGCTATGGTTATGTATGACTATCTCATAtgtatagatatagatatagttATCATTCTTAGTGACATTTTTAATTAGCATAaaactaaatttattatttaaaaatatagatcACTAATACTTATTTATGCACTGTTTTTTGCTCATGTAGAGAATTTGAGAGGAACTACTGAACTGTGCAGAATCTGCAGATTTGGTTGTTTAAATGGACAAGTTAGCATTATATGTGGTATGTAGCAGTACAATGCTGGCATTGTTCTCTGTTGCTCCTATTGTTCTCCAGCTTATCCTCTTTATATGGTGGACTTTTTAGAAAGCTTAAGCTCAGGAGCTTGCAAATTCTTGCTACTTTAAAATAATGCTAGTACAGACAAGAATGTTTTTGTATCTTAACAGTGTTAATCAAAGCTAATCAGTGATGTTTTTAGTGGAATAAATCTACTAGGTTTTAAGGCAAAAATGCCAATGTAACTTGAACTTAAATGTGATTTTTAGGCTTAAAATGATAtttcttatttttcatttttaatgtaataaagagtctgtccaattatttacaatatacTCTATTAgagtatttgatgttttttttatatcttgtgagtattttattaaatacagtaCGTGTTAATGTTAATCATACTGACTTGTGCTAGATTTCAGAGAATTTTTATTCAGAGAATGTTTTGATACTTTAAAGCCTTTTTCCTTGATACATCTACAATGCTGTAGTGTACAGCCCTCAGTattcagcagatggcgctctctTACAATTTTACATCTCACAAAATCTGTCTGTTCCTTccaatgactttaaaataggctCCTTCAtgttaaaattcaattaaaacaaatctacaaatcaaagCCTTTTCAAGTAGTCTTATTGTTGATTGCTGCTACTCCACGCGCTtcctttttaaataatgtatattcTTAGTTGAGGCCAATTGTAAAACACTTCTCAGACAGTAAATTGAATAACAATCTCCATTTAAAAAGCTGTGTTGAACAAACTTAATTTGACCGTTGTGCAAGTGCGAAAGCGTTTTGTTGTTTCCCAGTAGCCTGGAAGGGCATGCGTTAaacataagttggcggtccattccgttTTGGCGACACCTGCTTTAACAATTTGCCTTAAATTTAAACATTGATTCAAACCTATGTTCCTCGAGTTTGGTTAGACATTCCTCAGGAATGTGTCTGTC

Function

symbol description
aldh3a1 Predicted to enable 3-chloroallyl aldehyde dehydrogenase activity. Predicted to act upstream of or within cellular aldehyde metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in arteriosclerosis. Orthologous to human ALDH3A1 (aldehyde dehydrogenase 3 family member A1).

GO:

id name namespace
GO:0006081 cellular aldehyde metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0004028 3-chloroallyl aldehyde dehydrogenase activity molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120823-1 Predicted to enable 3-chloroallyl aldehyde dehydrogenase activity. Predicted to act upstream of or within cellular aldehyde metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in arteriosclerosis. Orthologous to human ALDH3A1 (aldehyde dehydrogenase 3 family member A1).

Ensembl:

ensembl_id ENSDARG00000074791

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016928 False 1827 mRNA 0.46 10 20799943 20806195
TCONS_00016929 True 4631 mRNA 0.36 9 20801253 20809124

Neighbor

gene id symbol gene type direction distance location
XLOC_008451 sgsm2 coding upstream 156116 20543770 ~ 20643827 (+)
XLOC_008450 tnfaip1 coding upstream 258758 20529197 ~ 20541185 (+)
XLOC_008449 NA coding upstream 341067 20411292 ~ 20458876 (+)
XLOC_008448 cox7a1 coding upstream 394147 20403084 ~ 20405796 (+)
XLOC_008447 supt5h coding upstream 404694 20363859 ~ 20395249 (+)
XLOC_008453 ulk2 coding downstream 34037 20843161 ~ 20894776 (+)
XLOC_008454 CR848784.1 coding downstream 87979 20897103 ~ 20901355 (+)
XLOC_008455 NA coding downstream 195609 21004733 ~ 21093616 (+)
XLOC_008456 NA coding downstream 208525 21017649 ~ 21037778 (+)
XLOC_008457 NA coding downstream 354911 21164035 ~ 21164573 (+)
XLOC_008463 BX663520.1 misc downstream 443067 21252191 ~ 21252282 (+)
XLOC_008436 NA non-coding upstream 1044125 19752881 ~ 19755818 (+)
XLOC_008435 CR626889.1 non-coding upstream 1078189 19688875 ~ 19721754 (+)
XLOC_008428 BX324206.3 non-coding upstream 1508566 19287632 ~ 19291377 (+)
XLOC_008427 BX324206.2 non-coding upstream 1513800 19284842 ~ 19286143 (+)
XLOC_008458 CR626907.1 non-coding downstream 358018 21167142 ~ 21177049 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_00146212_00152152 NA coding CI01000053 null 145827 ~ 152704 (+)