XLOC_008456



Basic Information


Item Value
gene id XLOC_008456
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21017649 ~ 21037778 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00018927
AGCTTGTTTTATTCACTTTTGGTCCACAGACCTCAATCAAGTTTGATTCGTGGCCCttaataagaaaaagtttgggcaccccttttTAGACAGTCTTGTACAGATCcattgcgccctcctgtggaaAACAGATAAAACACAGTCAAACAGCGCTAAGAGAATCTAAGAGTTGGTTTAGTGTAGAGTTGGGGATGATTCAAATGAaaagttcatatatatatttacacacagaaCCAGTGAGCAACAACAGTCAATGGAAAAAGCCACTGTAAAAGATAAGCAATGGTGGGAAAGTGCAGTACATGTTTTAACAAGCCATAATTCGAAATGTTTgggaaatacatttgtattacatGAAAATCATCAGTCAAACAtactaactaacgttaacattgtACACTTCGTTTTAAATTTAGCCTGTTGACACTCACAGCCAATCAGCCTTGATGACATCATCGAACGTCATGCTTCCATTTAGAACGCGTTCCATTCCATCAAGTTGCGAGCTGCTTGCAGAGCCAGAGGAGGAAGCAGAGCTGAAGGGGAAAAGTGAAACGTCGACTACACAGCGTTTACAGTTTATACAGCTTTACAGCACCAGGGCCAGATTTCTGCAGCATATTCTGGATTTCGGGACGAAGAAGCCATGACATGCCGGATGAGTCAGCAACAACGATAGAGACTCACAACCCCTCTCCACCACCAGTCGGATTCCAAGTGAACTACTCTAAAA

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00018927 True 733 lncRNA 0.42 2 21017649 21037778

Neighbor


gene id symbol gene type direction distance location
XLOC_008454 CR848784.1 coding upstream 116294 20897103 ~ 20901355 (+)
XLOC_008453 ulk2 coding upstream 122873 20843161 ~ 20894776 (+)
XLOC_008452 aldh3a1 coding upstream 208525 20799943 ~ 20809124 (+)
XLOC_008451 sgsm2 coding upstream 373822 20543770 ~ 20643827 (+)
XLOC_008450 tnfaip1 coding upstream 476464 20529197 ~ 20541185 (+)
XLOC_008457 NA coding downstream 126257 21164035 ~ 21164573 (+)
XLOC_008458 CR626907.1 coding downstream 129364 21167142 ~ 21177049 (+)
XLOC_008459 CR626907.3 coding downstream 142316 21180094 ~ 21198286 (+)
XLOC_008460 si:dkey-52d15.2 coding downstream 165042 21202820 ~ 21204471 (+)
XLOC_008461 NA coding downstream 202646 21240424 ~ 21245834 (+)
XLOC_008463 BX663520.1 misc downstream 214413 21252191 ~ 21252282 (+)
XLOC_008449 NA non-coding upstream 558773 20411292 ~ 20458876 (+)
XLOC_008436 NA non-coding upstream 1261831 19752881 ~ 19755818 (+)
XLOC_008435 CR626889.1 non-coding upstream 1295895 19688875 ~ 19721754 (+)
XLOC_008428 BX324206.3 non-coding upstream 1726272 19287632 ~ 19291377 (+)
XLOC_008462 NA non-coding downstream 209748 21247526 ~ 21251557 (+)

Expression



Co-expression Network