XLOC_008461


Basic Information

Item Value
gene id XLOC_008461
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21240424 ~ 21245834 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018773
ggagtaaacatgtcaggctaaataattcaaatgaattattgacttctgctgtcttttatttcaaaagacatgtttttttgtttgtttttttggaatttaaaaccgcatctttgaatatcttttttgctggagatacttgTATCctaaaacagtatttttaaaaaagtaaataaaatcttactcctaccttaggaatggtacagcagaaaattttgactgttttaaaaccttgacttttcaaaaccacggtataccttgaaaactgttatcgtcccatgcctgttTCTGTCAGTGTTTGGACCGATTTGATGACTCTGTCAGGTAGTTATGTGTAGCATCTGTCTCTGGGAGTTTGATTGTCAGGTGTTTTAAATAACATGCCTTTCCCTGTGCTGTGGTTTATTAGTgcaggttatatatatatatatatgttgtagcgaggcagagggaaaacagcggcacaacaggatgagtttacagacaagtccccggagggtgctttatttacaaagtgaatgtgctgtaaaaaaggtgctcttctttagggtgaggtgctctggtgctccgggaagtaggtgaaggacggtGAGTAGTCGGGTGCAGGATCGTCACTAGCTGGAGTCCgctaaggagagacagagagacaagcattagcacagggagtcatagaaggaatgaagctcatcttctcctggcgtaggttgggcttatatgtctctccgcttgatgagctccagctgtgtccgatcctggcttgatgaaggtccagctgggtgaaatttgcgaccagggcgacgtggcatataatt

Function

GO:

id name namespace
GO:0007052 mitotic spindle organization biological_process
GO:0008608 attachment of spindle microtubules to kinetochore biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018773 True 809 lncRNA 0.42 2 21240424 21245834

Neighbor

gene id symbol gene type direction distance location
XLOC_008460 si:dkey-52d15.2 coding upstream 35953 21202820 ~ 21204471 (+)
XLOC_008459 CR626907.3 coding upstream 42138 21180094 ~ 21198286 (+)
XLOC_008458 CR626907.1 coding upstream 63375 21167142 ~ 21177049 (+)
XLOC_008457 NA coding upstream 75851 21164035 ~ 21164573 (+)
XLOC_008455 NA coding upstream 146808 21004733 ~ 21093616 (+)
XLOC_008462 NA coding downstream 1692 21247526 ~ 21251557 (+)
XLOC_008464 usf1 coding downstream 6698 21252532 ~ 21262567 (+)
XLOC_008465 gkup coding downstream 17083 21262917 ~ 21275683 (+)
XLOC_008466 ubash3bb coding downstream 30901 21276735 ~ 21320638 (+)
XLOC_008467 NA coding downstream 77212 21323046 ~ 21495896 (+)
XLOC_008463 BX663520.1 misc downstream 6357 21252191 ~ 21252282 (+)
XLOC_008468 dre-mir-100-1 non-coding downstream 191799 21437633 ~ 21437728 (+)
XLOC_008469 dre-let-7a-2 non-coding downstream 192042 21437876 ~ 21437959 (+)
XLOC_008470 NA non-coding downstream 274576 21520410 ~ 21542918 (+)
XLOC_008456 NA non-coding upstream 202646 21017649 ~ 21037778 (+)

Expression


Co-expression Network